|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049364 ID=TCONS_00049364|Name=TCONS_00049364|organism=Clytia hemisphaerica|type=transcript|length=3127bpRun BLAST on NCBI protein sequence of TCONS_00049364-protein >TCONS_00049364-protein ID=TCONS_00049364-protein|Name=TCONS_00049364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MPLKMNFVGGTKLTSTGVEEKIEVKKEVTTTAAPTTTTAAAATSESTDQERun BLAST on NCBI transcript from alignment at scaffold_155:50915..67408- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049364 ID=TCONS_00049364|Name=TCONS_00049364|organism=Clytia hemisphaerica|type=transcript|length=16494bp|location=Sequence derived from alignment at scaffold_155:50915..67408- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_155:50915..67408- >TCONS_00049364 ID=TCONS_00049364|Name=TCONS_00049364|organism=Clytia hemisphaerica|type=CDS|length=21348bp|location=Sequence derived from alignment at scaffold_155:50915..67408- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049364 vs. Swiss-Prot (Human)
Match: ZFR (Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2) HSP 1 Score: 460.299 bits (1183), Expect = 2.918e-143 Identity = 300/758 (39.58%), Postives = 401/758 (52.90%), Query Frame = 3
Query: 579 LHYCEVCKISCAGPQTYKEHLEGQKHXXXXXXXXXXXXXXXP-----GTH---KCELCDVICTGKDAFNAHIKGANHLKTIKLHQKLGKPIPE-------------------------------------------IKAIETT--------------AEPKKANVVKTMPLKMNFVGGTKLTSTGXXXXXXXXXXXXXXXXXXXXXXXXXXSESTDQEVPV----------EGTPIGESYVEDIKSDVGKVIGFKCTLCDCRFNDHVAKMAHIKGRRHRMSYKKKVDRTIHVEMKGSKRKQAGVALXXXXXXXXXXXXXQNAFKQKQFEQMQ------WERQLRMREEELSRWERDEYMRRANEDRY-WTRPDKSRMHEMDFYEWERRENY---MEHPGPMFHRQGPP---PPTPDDKLIMAKHSDIYPSDSELKQVQSTVAAVEKALKMVSDSLGDKD---STPGEIKPLIXXXXXXXXXXXXXXXXXXXPLMKSAAAAAGNNRTLKGVMRVGPLCTGLLLKGQLAVELVVLCADKPTKTLLTKVGKLVPDKLKEAAPEAKYNMSISVADCCINITSTDEPKCTVKVTLTSPACRDEDEQGQPKESTPVVNEKDVLDKKKTLETLAALRHAKWFQARANQLTSCVITIRIVRDLCQRSAAFKPLSGWAIELLCEKAIGSSFGPIPPGEAFRRVLEAVSSGVFLPGGTGLIDPCEKEKTDAAANLTAQEREDMTAAAQQALRSFAFRQLHKVLGVEPL 2579
+HYC+VCKISCAGPQTYKEHLEGQKHKKK AA + GT +CELCDV CTG DA+ AHI+GA H K +KLH KLGKPIP +K + TT A P KT K+NFVGG KL STG + + E + T+ + T E PV + P+G YVE++++D GKVI F C LC+C FND AK H+KGRRHR+ YKKKV+ + VE+K S R + ++K +QMQ + E+ R+E D Y RR E+++ W D+ RM + + + P + P P + DD+ +M KH+ IYP++ EL+ VQ V+ E+ALK+VSDSL + + + G+ K G +R LKGV+RVG L GLLL+G V LV+LC++KP+KTLL+++ + +P +L +PE KY++ +V++ I + S EPK V +TLTSP R+E+ + S V + DVLD++K L+ LAALRHAKWFQARAN L SCVI IRI+RDLCQR + WA+ELL EKAI S+ P PG+A RRV E +SSG+ L G GL+DPCEK+ D A +T Q+RED+T++AQ ALR AFRQ+HKVLG++PL
Sbjct: 330 IHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNSSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSVATSSMKGLTTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINFVGGNKLQSTGNKAEDIKGTECVKSTPVTSAVQIPEVKQDTVSE-PVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIR-------------------ARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWD--DRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKNKEGDDK-----------------------------KEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPE-KYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPL 1035 The following BLAST results are available for this feature:
BLAST of TCONS_00049364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.