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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049372 ID=TCONS_00049372|Name=TCONS_00049372|organism=Clytia hemisphaerica|type=transcript|length=1657bp
TGGGGTATTCAGcactattacatcacttttgttttcaaccccttgcattt
gccaccaatcacaagtgaaaaataccccgttcatttgccacgatgtgcct
gactgacagAATGGTCGGGGAGTCTAGTGTCGCAGATAATATACTGGCAG
ACTTTACAGTATACCAAAAATTCAAGCAGCTGCCAACAGCAACAAGCTGC
ACATTATTTGTCGGTTTTGAATGGAATGATAATTCATACTGGTAAAACGA
AAGGCATGATTATCTCCAAACGTGAATTTATCGGTCCACTGCAGAACATC
ATCACCATGAATGgaagaaatcttgaaattgTAGATCATCAGAAAGTTTT
GGGAACCACCATTGACAATTCCTTATTGATTGAGAGtacaaatagacaaa
aatgaaaagcattatcacacaaaaatcaagaTGTTGAAACGTATGGTTAT
TCTTGGTAGTATTGTCATGTCCAAATTTTACTTTGCAATCATCATTCCAT
CAGTTACATATGATATAACAGTATGAGACAATATCAATAATATTTAATAA
TGTTATCTTAAAAGGGATAATCGATGgtatggtttgaaatttttcagccT
ACAGTCTGACAGTATGCTAATTATTTTACTAAGTTGATAGATATTCGACT
TTGATATTTCTGAACCTTACACCATAGGGTGTACCTGTAGGCAAAAAATA
TCAAACCATCTGATTATCCCTTTAATGTATCTTTCAATACCGAATATTTG
TCTGACAATGAAGCATATTAAAGGCGGCTGGATGGATAGTTATTGAATAT
TTGTACAAGCATAGGTTGTTGTGTCTTATATGTTTTTCAGACTCTAGTTC
TACTCCTCAAAGTAGAGACAATCAAATAAAAATTGCAAAAAAATTTAGGA
CAACCAATCAAAAAACTTTTGTTATTAGAGCTTCCAAGATATTGAATACA
ATGTTTAATGAGCTTACCAAAATTTGACATTTTTAGAAATAAACTGAAAA
ATATTTAAAAGTAAGATCATTAAATTTTCTTTTGTATATAATTCATAGAA
TATGACTAGTAtgcatttatttttatttacatagtcaattttttgaaatt
aaaatgtaTTTACACAGATTTACAAATCGATTCCCCTAAGCTTTGCATTA
TGATTTAAATTCTTAGAAGTCTGACAATATTAACTTAGCATCGCTCAGCA
GTCTTTGCTATACTCTTGGTAAAGTTGAACCTGAAGATTTGCTACATTCT
CACTGTAATATAGTCTTTCTAAGGGAAAAGAATTTGGCCACTCTTTGAAG
TTTGTAGTTAACTGACTGGAgaagatatttcatttttcatactattttcc
ttttcttttctttttaacccCCCTCTCTCTCACTTTGGATTAAAAACCTT
AAATTTTCACACACATTTGTTTTCAAAGAATTCctgtatgatttttttct
gagtcagctgttttttttaatttggcgttGCGTTTTGGATAACAAATCTG
GAGTTTTTAATGCATTACACCACACAGCCCTTTTTAtgctttgaaaatta
ttttactaaATAACtatttatcaaatttatctacctggtgacccacgaaa
aagttcagacgtttcccgacatcttgaggccgaacaaatgtcccaaagtg
cttggag Run BLAST on NCBI transcript from alignment at scaffold_155:14095..15751 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049372 ID=TCONS_00049372|Name=TCONS_00049372|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at scaffold_155:14095..15751 (Clytia hemisphaerica)
ctccaagcactttgggacatttgttcggcctcaagatgtcgggaaacgtc
tgaactttttcgtgggtcaccaggtagataaatttgataaataGTTATtt
agtaaaataattttcaaagcaTAAAAAGGGCTGTGTGGTGTAATGCATTA
AAAACTCCAGATTTGTTATCCAAAACGCaacgccaaattaaaaaaaacag
ctgactcagaaaaaaatcatacagGAATTCTTTGAAAACAAATGTGTGTG
AAAATTTAAGGTTTTTAATCCAAAGTGAGAGAGAGGGgggttaaaaagaa
aagaaaaggaaaatagtatgaaaaatgaaatatcttcTCCAGTCAGTTAA
CTACAAACTTCAAAGAGTGGCCAAATTCTTTTCCCTTAGAAAGACTATAT
TACAGTGAGAATGTAGCAAATCTTCAGGTTCAACTTTACCAAGAGTATAG
CAAAGACTGCTGAGCGATGCTAAGTTAATATTGTCAGACTTCTAAGAATT
TAAATCATAATGCAAAGCTTAGGGGAATCGATTTGTAAATCTGTGTAAAt
acattttaatttcaaaaaattgactatgtaaataaaaataaatgcaTACT
AGTCATATTCTATGAATTATATACAAAAGAAAATTTAATGATCTTACTTT
TAAATATTTTTCAGTTTATTTCTAAAAATGTCAAATTTTGGTAAGCTCAT
TAAACATTGTATTCAATATCTTGGAAGCTCTAATAACAAAAGTTTTTTGA
TTGGTTGTCCTAAATTTTTTTGCAATTTTTATTTGATTGTCTCTACTTTG
AGGAGTAGAACTAGAGTCTGAAAAACATATAAGACACAACAACCTATGCT
TGTACAAATATTCAATAACTATCCATCCAGCCGCCTTTAATATGCTTCAT
TGTCAGACAAATATTCGGTATTGAAAGATACATTAAAGGGATAATCAGAT
GGTTTGATATTTTTTGCCTACAGGTACACCCTATGGTGTAAGGTTCAGAA
ATATCAAAGTCGAATATCTATCAACTTAGTAAAATAATTAGCATACTGTC
AGACTGTAggctgaaaaatttcaaaccatacCATCGATTATCCCTTTTAA
GATAACATTATTAAATATTATTGATATTGTCTCATACTGTTATATCATAT
GTAACTGATGGAATGATGATTGCAAAGTAAAATTTGGACATGACAATACT
ACCAAGAATAACCATACGTTTCAACAtcttgatttttgtgtgataatgct
tttcatttttgtctatttgtaCTCTCAATCAATAAGGAATTGTCAATGGT
GGTTCCCAAAACTTTCTGATGATCTAcaatttcaagatttcttcCATTCA
TGGTGATGATGTTCTGCAGTGGACCGATAAATTCACGTTTGGAGATAATC
ATGCCTTTCGTTTTACCAGTATGAATTATCATTCCATTCAAAACCGACAA
ATAATGTGCAGCTTGTTGCTGTTGGCAGCTGCTTGAATTTTTGGTATACT
GTAAAGTCTGCCAGTATATTATCTGCGACACTAGACTCCCCGACCATTct
gtcagtcaggcacatcgtggcaaatgaacggggtatttttcacttgtgat
tggtggcaaatgcaaggggttgaaaacaaaagtgatgtaatagtgCTGAA
TACCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049372-exon-scaffold_155-1491911889:14095..15751 | TCONS_00049372-exon-scaffold_155-1491911889:14095..15751 | Clytia hemisphaerica | exon |
| TCONS_00049372-exon-scaffold_155-1510915933:14095..15751 | TCONS_00049372-exon-scaffold_155-1510915933:14095..15751 | Clytia hemisphaerica | exon |
| TCONS_00049372-exon-scaffold_155-1575043694:14095..15751 | TCONS_00049372-exon-scaffold_155-1575043694:14095..15751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:14095..15751 . |
Blast
The following BLAST results are available for this feature:
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