TCONS_00049375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049375
Unique NameTCONS_00049375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049375 ID=TCONS_00049375|Name=TCONS_00049375|organism=Clytia hemisphaerica|type=transcript|length=450bp
CCAGTGTCGACATCATAGTCCTGCTccaaaccaaaatcagttctcAATTT
AACATAAATTTCTGCCACCTTATCGGGGTGTTTTTCAAATCCATGCCAGC
CCTTTAAATTGCGTCGTTTCAATTCTTCAGGATGGAATTTATCAATCAAC
ATCTTCAATCCTGCAGTTGCCATCTTGCCGAGATCTTTCGTTGGTTGTTG
GGGCCTGTCAAAATTCATTTGCAAATCTTCAACCGAAATTGAAGGCGTCC
TCGCCAATGAAAATTAGAGGATTGCGTTCAATCGCAGTCTTAATATCTTT
CAATTGAGATGAAATTTCTGTGTTCATGTTTGCAACTACATTTTTGAGGG
AGATGACTTCTTCTTTTAATTGactattttcgattttcaaagcaAATACT
TCCATCTTAAGGGATTTTAAGTCATCACCCTCGCAGTGGTCTTGTCGCGC
Run BLAST on NCBI

transcript from alignment at scaffold_155:112360..112809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049375 ID=TCONS_00049375|Name=TCONS_00049375|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_155:112360..112809 (Clytia hemisphaerica)
GCGCGACAAGACCACTGCGAGGGTGATGACTTAAAATCCCTTAAGATGGA
AGTATTtgctttgaaaatcgaaaatagtCAATTAAAAGAAGAAGTCATCT
CCCTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTCAATTG
AAAGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCATTGGCGA
GGACGCCTTCAATTTCGGTTGAAGATTTGCAAATGAATTTTGACAGGCCC
CAACAACCAACGAAAGATCTCGGCAAGATGGCAACTGCAGGATTGAAGAT
GTTGATTGATAAATTCCATCCTGAAGAATTGAAACGACGCAATTTAAAGG
GCTGGCATGGATTTGAAAAACACCCCGATAAGGTGGCAGAAATTTATGTT
AAATTgagaactgattttggtttggAGCAGGACTATGATGTCGACACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031339XLOC_031339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049375-exon-scaffold_155-1491911889:112360..112809TCONS_00049375-exon-scaffold_155-1491911889:112360..112809Clytia hemisphaericaexon
TCONS_00049375-exon-scaffold_155-1510915933:112360..112809TCONS_00049375-exon-scaffold_155-1510915933:112360..112809Clytia hemisphaericaexon
TCONS_00049375-exon-scaffold_155-1575043694:112360..112809TCONS_00049375-exon-scaffold_155-1575043694:112360..112809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:112360..112809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.313749	0.567787	0.35437	0.351132	0.261146	0.149144	0.0980414	0.587431	0.101675	0.250773	0.947338	0	0.277798	0	0	0	0.208273	0	0	0	0.987413	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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