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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049377 ID=TCONS_00049377|Name=TCONS_00049377|organism=Clytia hemisphaerica|type=transcript|length=2137bp
cggactttcaaaatggcggcgtAGCTCTGATAACTTTGGAAAAACTTCTA
CAAATCAACTCAACTATCAAGTCAATCTGAAGCATCCATCAACAATCTTC
ATAAATCCAATTATTAAAACATCAAGCTATAATAATTCACTAACAAAATG
CCCAACAAAGGGAAGAAAGCAGTCCAACAAGAAAATGTTTCAACACCAAC
ATTGTCACAGAAATCTCCTGCTATggtaaatttgacaaaaaggcttgaaa
aattaGATGATAGCGAGAACAATACCATCGATATTGACGTGGATGACATC
TCCAAAGAAGTGATGCTAACTACAATCTTAGCCCTACAAAAAGAGGTCAG
TACTCTATCAAAAAGAGTTGATAATCTTGAACATAACCTGGTTATTGCTA
ATTCTCAAATCGCTATATCTTCACAAACCTCCACCTTACTGAAAAATGAA
CTAGACAATGCTGAACAATACTCAAGACGATCATGTATTGTTGTCAATGG
TGTTCCTGCAACTAATGACAAAAACTTTGACCATGTTGGGAACATCAAGA
CAATCCTCGAAAAAAGTGCCCCTGAGGTCACTACATCATCAATTGACAAA
GCCCACCCAGTTGGACCAGTTATCAATGGAAAGCAGTCAATAATTGTAAA
GTTCTCCAAACATTCAACTGTTAAGAGTCTTTACATGAAACGAAGACAAA
TCAAGAAGGATTCACTGGTATCACTTCAACCTTCTCTTACTCGTCAACGC
TCGAAAACTCTCAAATCCTTGAAAGAGAAAATTTCTAAAGAAGGAACTAT
TTTTAACAAgttggtaaattttatttttgcggACATTGAAGGAAATTTGA
AAGCTTGCCTCAAAAATCCTTTGCGTGGCAGAAATATTCACACTTTTACA
AATGAGGACCATCTTGCTTATATTATTCATGATCTAAACTATGAACGATT
TGATGCCCCTATGTAACTATGCTAACCAACCTGAATGCTGAAACTAACAC
AAACTAACGTAGAATGACTCCAACCTATGCTCCAAGAAAGAAAAGTTCGT
TAACAATTTCATCTTaggtatatttttttattatttctcaCCACCTCAAC
AATCTCTTCACGTACATAGCTCATTGCATTTATTGCCTGATTCTTACTAC
TTTAAACACTTTTCTcgtcttttgaattttttaagctCATTTCATTTATG
GACAAATGTCCTGTTTGTAAAAAAACTGTTAGTGATAAGTGTAATTCAAT
TCAATGTGACATATGTGACCTCTGGACCCACCAACACAAATGTTCAGGGT
TATCACGAAAACAATTTCAAGCTCTGTCTTTACCCAATTCTCCAAACTGG
TATTGTCCTGTTTGCATTAACAATACATTACCAGGTTCGTATATTTTCAA
TAATAAACCTGAAGACCAAAAAACAACTGATTTCTCTAGCTCCAATCTTA
ATGATGAGTTGAAAACACTACTTTCTGATCTTAACAAAGTCGTCACTGGC
ACCACTGCCAGTGAAAAAGATGAAGAAGATAACATCCAATTTCACAACAA
CAGTTGCAGTTACCTTGACTGCAACGAACTCAATGACGTAATctctaaaa
ataattttgattgctCTGCGTTCCATCTAAACATTGCATCAATGTCTAAA
CATTTTGACAAACTAATAAATCTTCTAGCATTGATAAATTCCAGTTTTAG
TTTTGTTGGTATCTCTGAAACTAGAAGCTTGACCGACCAGCCTGAATCTA
CTCTAGAATCTGTTCCCCTGGAACAAAAAAGTGACTTCACTATTCCAGGG
TATGAAAAATTTTTCACTCCGACAGAATCTTCTGCTGGTGGGGTCTCTCT
CTACATTTCCAAGAAACTTCTATATAAACCCAGACAAGATCTCAGTAATT
CCTGTTATCAATCTCTCAGTCTTGAATCTGTCTTTGTTGAAGTCATTCTC
TCAAACCGTCCCAACATTTTAGTTGGTAACATATATCGCCATCCATGCAT
GTCCATAAAAACTTTCAATGAAGAATTCTTACAACCACTGCttcacaaaa
taaaacgtgagaaaaaacaaattattttgcTTGGTGACTTCAACATAGAC
CTGCTCAAATGTGAAGAATCAGCTGAGGCTTCATCAT Run BLAST on NCBI protein sequence of TCONS_00049377-protein >TCONS_00049377-protein ID=TCONS_00049377-protein|Name=TCONS_00049377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MDKCPVCKKTVSDKCNSIQCDICDLWTHQHKCSGLSRKQFQALSLPNSPN
WYCPVCINNTLPGSYIFNNKPEDQKTTDFSSSNLNDELKTLLSDLNKVVT
GTTASEKDEEDNIQFHNNSCSYLDCNELNDVISKNNFDCSAFHLNIASMS
KHFDKLINLLALINSSFSFVGISETRSLTDQPESTLESVPLEQKSDFTIP
GYEKFFTPTESSAGGVSLYISKKLLYKPRQDLSNSCYQSLSLESVFVEVI
LSNRPNILVGNIYRHPCMSIKTFNEEFLQPLLHKIKREKKQIILLGDFNI
DLLKCEESAEASS Run BLAST on NCBI transcript from alignment at scaffold_155:126158..128294 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049377 ID=TCONS_00049377|Name=TCONS_00049377|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at scaffold_155:126158..128294 (Clytia hemisphaerica)
ATGATGAAGCCTCAGCTGATTCTTCACATTTGAGCAGGTCTATGTTGAAG
TCACCAAgcaaaataatttgttttttctcacgttttattttgtgaaGCAG
TGGTTGTAAGAATTCTTCATTGAAAGTTTTTATGGACATGCATGGATGGC
GATATATGTTACCAACTAAAATGTTGGGACGGTTTGAGAGAATGACTTCA
ACAAAGACAGATTCAAGACTGAGAGATTGATAACAGGAATTACTGAGATC
TTGTCTGGGTTTATATAGAAGTTTCTTGGAAATGTAGAGAGAGACCCCAC
CAGCAGAAGATTCTGTCGGAGTGAAAAATTTTTCATACCCTGGAATAGTG
AAGTCACTTTTTTGTTCCAGGGGAACAGATTCTAGAGTAGATTCAGGCTG
GTCGGTCAAGCTTCTAGTTTCAGAGATACCAACAAAACTAAAACTGGAAT
TTATCAATGCTAGAAGATTTATTAGTTTGTCAAAATGTTTAGACATTGAT
GCAATGTTTAGATGGAACGCAGagcaatcaaaattatttttagagATTAC
GTCATTGAGTTCGTTGCAGTCAAGGTAACTGCAACTGTTGTTGTGAAATT
GGATGTTATCTTCTTCATCTTTTTCACTGGCAGTGGTGCCAGTGACGACT
TTGTTAAGATCAGAAAGTAGTGTTTTCAACTCATCATTAAGATTGGAGCT
AGAGAAATCAGTTGTTTTTTGGTCTTCAGGTTTATTATTGAAAATATACG
AACCTGGTAATGTATTGTTAATGCAAACAGGACAATACCAGTTTGGAGAA
TTGGGTAAAGACAGAGCTTGAAATTGTTTTCGTGATAACCCTGAACATTT
GTGTTGGTGGGTCCAGAGGTCACATATGTCACATTGAATTGAATTACACT
TATCACTAACAGTTTTTTTACAAACAGGACATTTGTCCATAAATGAAATG
agcttaaaaaattcaaaagacgAGAAAAGTGTTTAAAGTAGTAAGAATCA
GGCAATAAATGCAATGAGCTATGTACGTGAAGAGATTGTTGAGGTGGtga
gaaataataaaaaaatatacctAAGATGAAATTGTTAACGAACTTTTCTT
TCTTGGAGCATAGGTTGGAGTCATTCTACGTTAGTTTGTGTTAGTTTCAG
CATTCAGGTTGGTTAGCATAGTTACATAGGGGCATCAAATCGTTCATAGT
TTAGATCATGAATAATATAAGCAAGATGGTCCTCATTTGTAAAAGTGTGA
ATATTTCTGCCACGCAAAGGATTTTTGAGGCAAGCTTTCAAATTTCCTTC
AATGTccgcaaaaataaaatttaccaacTTGTTAAAAATAGTTCCTTCTT
TAGAAATTTTCTCTTTCAAGGATTTGAGAGTTTTCGAGCGTTGACGAGTA
AGAGAAGGTTGAAGTGATACCAGTGAATCCTTCTTGATTTGTCTTCGTTT
CATGTAAAGACTCTTAACAGTTGAATGTTTGGAGAACTTTACAATTATTG
ACTGCTTTCCATTGATAACTGGTCCAACTGGGTGGGCTTTGTCAATTGAT
GATGTAGTGACCTCAGGGGCACTTTTTTCGAGGATTGTCTTGATGTTCCC
AACATGGTCAAAGTTTTTGTCATTAGTTGCAGGAACACCATTGACAACAA
TACATGATCGTCTTGAGTATTGTTCAGCATTGTCTAGTTCATTTTTCAGT
AAGGTGGAGGTTTGTGAAGATATAGCGATTTGAGAATTAGCAATAACCAG
GTTATGTTCAAGATTATCAACTCTTTTTGATAGAGTACTGACCTCTTTTT
GTAGGGCTAAGATTGTAGTTAGCATCACTTCTTTGGAGATGTCATCCACG
TCAATATCGATGGTATTGTTCTCGCTATCATCtaatttttcaagcctttt
tgtcaaatttaccATAGCAGGAGATTTCTGTGACAATGTTGGTGTTGAAA
CATTTTCTTGTTGGACTGCTTTCTTCCCTTTGTTGGGCATTTTGTTAGTG
AATTATTATAGCTTGATGTTTTAATAATTGGATTTATGAAGATTGTTGAT
GGATGCTTCAGATTGACTTGATAGTTGAGTTGATTTGTAGAAGTTTTTCC
AAAGTTATCAGAGCTacgccgccattttgaaagtccg Coding sequence (CDS) from alignment at scaffold_155:126158..128294 >TCONS_00049377 ID=TCONS_00049377|Name=TCONS_00049377|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_155:126158..128294 (Clytia hemisphaerica)
TGATGAAGCCTCAGCTGATTCTTCACATTTGAGCAGGTCTATGTTGAAGT
CACCAAgcaaaataatttgttttttctcacgttttattttgtgaaGCAGT
GGTTGTAAGAATTCTTCATTGAAAGTTTTTATGGACATGCATGGATGGCG
ATATATGTTACCAACTAAAATGTTGGGACGGTTTGAGAGAATGACTTCAA
CAAAGACAGATTCAAGACTGAGAGATTGATAACAGGAATTACTGAGATCT
TGTCTGGGTTTATATAGAAGTTTCTTGGAAATGTAGAGAGAGACCCCACC
AGCAGAAGATTCTGTCGGAGTGAAAAATTTTTCATACCCTGGAATAGTGA
AGTCACTTTTTTGTTCCAGGGGAACAGATTCTAGAGTAGATTCAGGCTGG
TCGGTCAAGCTTCTAGTTTCAGAGATACCAACAAAACTAAAACTGGAATT
TATCAATGCTAGAAGATTTATTAGTTTGTCAAAATGTTTAGACATTGATG
CAATGTTTAGATGGAACGCAGagcaatcaaaattatttttagagATTACG
TCATTGAGTTCGTTGCAGTCAAGGTAACTGCAACTGTTGTTGTGAAATTG
GATGTTATCTTCTTCATCTTTTTCACTGGCAGTGGTGCCAGTGACGACTT
TGTTAAGATCAGAAAGTAGTGTTTTCAACTCATCATTAAGATTGGAGCTA
GAGAAATCAGTTGTTTTTTGGTCTTCAGGTTTATTATTGAAAATATACGA
ACCTGGTAATGTATTGTTAATGCAAACAGGACAATACCAGTTTGGAGAAT
TGGGTAAAGACAGAGCTTGAAATTGTTTTCGTGATAACCCTGAACATTTG
TGTTGGTGGGTCCAGAGGTCACATATGTCACATTGAATTGAATTACACTT
ATCACTAACAGTTTTTTTACAAACAGGACATTTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049377-exon-scaffold_155-1491911889:126158..128294 | TCONS_00049377-exon-scaffold_155-1491911889:126158..128294 | Clytia hemisphaerica | exon |
| TCONS_00049377-exon-scaffold_155-1510915933:126158..128294 | TCONS_00049377-exon-scaffold_155-1510915933:126158..128294 | Clytia hemisphaerica | exon |
| TCONS_00049377-exon-scaffold_155-1575043694:126158..128294 | TCONS_00049377-exon-scaffold_155-1575043694:126158..128294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:126158..128294 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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