TCONS_00049379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049379
Unique NameTCONS_00049379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049379 ID=TCONS_00049379|Name=TCONS_00049379|organism=Clytia hemisphaerica|type=transcript|length=348bp
TCACTGTCGAAATCATAGCTTCGGTGCACTCTGCAGTTACTAACGTATTG
TCGAATCCAGCTGCAAGTGAGAATAAAGTCATATACCTTTTGTGTTTTCC
CATCGGAGGAATACCAGGTAACTCTGCGGCACATTTTGTGAGTAAACCAT
GTGTTTAGGACGGGTAGACGACAATTGTCGAAGAAGCTTTGGAAGCGCTC
CCCATTGTCATTGAATTCAAGGTTTTCTACTATTGAGTTTTCACGTAGTG
ATGTGTTTGACCAACTGGCCGATGTTGTTGCATTGAAGTCCCCGAGACAT
ATAACTTTACGATTAGTTTCGGTATTAGTGACAAGAGTTCTTATTTTG
Run BLAST on NCBI

protein sequence of TCONS_00049379-protein

>TCONS_00049379-protein ID=TCONS_00049379-protein|Name=TCONS_00049379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
KIRTLVTNTETNRKVICLGDFNATTSASWSNTSLRENSIVENLEFNDNGE
RFQSFFDNCRLPVLNTWFTHKMCRRVTWYSSDGKTQKVYDFILTCSWIRQ
YVSNCRVHRSYDFDS
Run BLAST on NCBI

transcript from alignment at scaffold_155:139478..139825

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049379 ID=TCONS_00049379|Name=TCONS_00049379|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_155:139478..139825 (Clytia hemisphaerica)
CAAAATAAGAACTCTTGTCACTAATACCGAAACTAATCGTAAAGTTATAT
GTCTCGGGGACTTCAATGCAACAACATCGGCCAGTTGGTCAAACACATCA
CTACGTGAAAACTCAATAGTAGAAAACCTTGAATTCAATGACAATGGGGA
GCGCTTCCAAAGCTTCTTCGACAATTGTCGTCTACCCGTCCTAAACACAT
GGTTTACTCACAAAATGTGCCGCAGAGTTACCTGGTATTCCTCCGATGGG
AAAACACAAAAGGTATATGACTTTATTCTCACTTGCAGCTGGATTCGACA
ATACGTTAGTAACTGCAGAGTGCACCGAAGCTATGATTTCGACAGTGA

Coding sequence (CDS) from alignment at scaffold_155:139478..139825

>TCONS_00049379 ID=TCONS_00049379|Name=TCONS_00049379|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_155:139478..139825 (Clytia hemisphaerica)
AAAATAAGAACTCTTGTCACTAATACCGAAACTAATCGTAAAGTTATATG
TCTCGGGGACTTCAATGCAACAACATCGGCCAGTTGGTCAAACACATCAC
TACGTGAAAACTCAATAGTAGAAAACCTTGAATTCAATGACAATGGGGAG
CGCTTCCAAAGCTTCTTCGACAATTGTCGTCTACCCGTCCTAAACACATG
GTTTACTCACAAAATGTGCCGCAGAGTTACCTGGTATTCCTCCGATGGGA
AAACACAAAAGGTATATGACTTTATTCTCACTTGCAGCTGGATTCGACAA
TACGTTAGTAACTGCAGAGTGCACCGAAGCTATGATTTCGACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031343XLOC_031343Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049379-proteinTCONS_00049379-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049379-exon-scaffold_155-1491911889:139478..139825TCONS_00049379-exon-scaffold_155-1491911889:139478..139825Clytia hemisphaericaexon
TCONS_00049379-exon-scaffold_155-1510915933:139478..139825TCONS_00049379-exon-scaffold_155-1510915933:139478..139825Clytia hemisphaericaexon
TCONS_00049379-exon-scaffold_155-1575043694:139478..139825TCONS_00049379-exon-scaffold_155-1575043694:139478..139825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:139478..139825 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255235	0.497789	0.57798	1.97912	1.72099	4.35185	5.90661	5.8369	1.50557	2.66413	0.517175	0.509955	0.509246	1.234	0.289862	0	0.95802	0.196388	0.271321	0	0.246776	0	0.292647	0.532118	0.548069	0.244569	0.699956	0.373506	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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