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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049380 ID=TCONS_00049380|Name=TCONS_00049380|organism=Clytia hemisphaerica|type=transcript|length=898bp
CCTCTTTAGAGATACACTCAAACACTTCAGGTGTACAAACTTACGACGTT
TACTTCTacggatttgaggaaaattatatgaTTTCTTTCATGAATTGANG
AATGTCGAATAGTGGGGTTGATTGACGGTTATCGAATCGCAAACGAATCG
ATTCGAAAAGCCAGTCTCGAGGGATGTGGTCGAATGCTGCCATCAGGTCG
GCGAAAAGGAGAAAAAGGGGCTGTCTTTTTCGATCAGTAATCTGTTGGAT
CCGTTTAATTGTGTATATTCCTTCAGTTGTTCCCCTATCTTTCCGAAAAC
CATTCTGTTCGTCGCTTAGTTGTAGCTCGTACCAAGGACGAAGTCGATCG
AGAATTAAATTGATCAAGAGTTTACAAACGGTTGAGCCAATACTTATCCC
ACGATACTTTTTGGGGTCTTTTTTGGATCCTTTCTTTTTCCATATGGCTT
GCAGACGGGAATTCCCCCATGCAGTCGGGACGTCAAAATTTTCCCAGAGA
TTTGAAGACATTCTGTGTATCACAAGCATAACTGGATGATCGAGCCGTTT
GATTAGAGTAGGGTCAATATCGTTAAAAGCTCTATTGACTTTAAGTTTCG
TAATTTGTTGACTTATCTCGTCAGTATCAGGGGGTTCACTTTTGACGTTT
GTTGTAGCTGAAATTTGTCGAAGTTGTGTAACATAGTGGGGAAGATCATC
ATTCGATAGTTCGATTTGCCTGTTTTGCCGTTTGGTAGGGTTGAAGTGAG
ATTTGAAGTGATTGAGAAGACTTTGGGTTGGACAAGAAGCTTAAATATTT
GAAAGAGTGCTACTTTGCTCTTTTGCccgtttgaaaagtttttgtagGTT
GCGATTAATTGCTAGCTGGTTCAATTTTTCAGCTTCTGTTTTCAGATA Run BLAST on NCBI protein sequence of TCONS_00049380-protein >TCONS_00049380-protein ID=TCONS_00049380-protein|Name=TCONS_00049380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MLVIHRMSSNLWENFDVPTAWGNSRLQAIWKKKGSKKDPKKYRGISIGST
VCKLLINLILDRLRPWYELQLSDEQNGFRKDRGTTEGIYTIKRIQQITDR
KRQPLFLLFADLMAAFDHIPRDWLFESIRLRFDNRQSTPLFDIXQFMKEI
I Run BLAST on NCBI transcript from alignment at scaffold_155:141145..142042 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049380 ID=TCONS_00049380|Name=TCONS_00049380|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at scaffold_155:141145..142042 (Clytia hemisphaerica)
TATCTGAAAACAGAAGCTGAAAAATTGAACCAGCTAGCAATTAATCGCAA
CctacaaaaacttttcaaacggGCAAAAGAGCAAAGTAGCACTCTTTCAA
ATATTTAAGCTTCTTGTCCAACCCAAAGTCTTCTCAATCACTTCAAATCT
CACTTCAACCCTACCAAACGGCAAAACAGGCAAATCGAACTATCGAATGA
TGATCTTCCCCACTATGTTACACAACTTCGACAAATTTCAGCTACAACAA
ACGTCAAAAGTGAACCCCCTGATACTGACGAGATAAGTCAACAAATTACG
AAACTTAAAGTCAATAGAGCTTTTAACGATATTGACCCTACTCTAATCAA
ACGGCTCGATCATCCAGTTATGCTTGTGATACACAGAATGTCTTCAAATC
TCTGGGAAAATTTTGACGTCCCGACTGCATGGGGGAATTCCCGTCTGCAA
GCCATATGGAAAAAGAAAGGATCCAAAAAAGACCCCAAAAAGTATCGTGG
GATAAGTATTGGCTCAACCGTTTGTAAACTCTTGATCAATTTAATTCTCG
ATCGACTTCGTCCTTGGTACGAGCTACAACTAAGCGACGAACAGAATGGT
TTTCGGAAAGATAGGGGAACAACTGAAGGAATATACACAATTAAACGGAT
CCAACAGATTACTGATCGAAAAAGACAGCCCCTTTTTCTCCTTTTCGCCG
ACCTGATGGCAGCATTCGACCACATCCCTCGAGACTGGCTTTTCGAATCG
ATTCGTTTGCGATTCGATAACCGTCAATCAACCCCACTATTCGACATTCN
TCAATTCATGAAAGAAAtcatataattttcctcaaatccgtAGAAGTAAA
CGTCGTAAGTTTGTACACCTGAAGTGTTTGAGTGTATCTCTAAAGAGG Coding sequence (CDS) from alignment at scaffold_155:141145..142042 >TCONS_00049380 ID=TCONS_00049380|Name=TCONS_00049380|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_155:141145..142042 (Clytia hemisphaerica)
ATGCTTGTGATACACAGAATGTCTTCAAATCTCTGGGAAAATTTTGACGT
CCCGACTGCATGGGGGAATTCCCGTCTGCAAGCCATATGGAAAAAGAAAG
GATCCAAAAAAGACCCCAAAAAGTATCGTGGGATAAGTATTGGCTCAACC
GTTTGTAAACTCTTGATCAATTTAATTCTCGATCGACTTCGTCCTTGGTA
CGAGCTACAACTAAGCGACGAACAGAATGGTTTTCGGAAAGATAGGGGAA
CAACTGAAGGAATATACACAATTAAACGGATCCAACAGATTACTGATCGA
AAAAGACAGCCCCTTTTTCTCCTTTTCGCCGACCTGATGGCAGCATTCGA
CCACATCCCTCGAGACTGGCTTTTCGAATCGATTCGTTTGCGATTCGATA
ACCGTCAATCAACCCCACTATTCGACATTCNTCAATTCATGAAAGAAAtc
atataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049380-exon-scaffold_155-1491911889:141145..142042 | TCONS_00049380-exon-scaffold_155-1491911889:141145..142042 | Clytia hemisphaerica | exon |
| TCONS_00049380-exon-scaffold_155-1510915933:141145..142042 | TCONS_00049380-exon-scaffold_155-1510915933:141145..142042 | Clytia hemisphaerica | exon |
| TCONS_00049380-exon-scaffold_155-1575043694:141145..142042 | TCONS_00049380-exon-scaffold_155-1575043694:141145..142042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:141145..142042 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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