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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049384 ID=TCONS_00049384|Name=TCONS_00049384|organism=Clytia hemisphaerica|type=transcript|length=2092bp
gagaacagtaaccatgacgacaatccaagatcttagAGTAAATTgcaagt
tgatatttttattcgcgtcgttgaaaacacaactcaaagaTGTCATCgac
gctttttaaaaagagtcagcgaCAGagaaatcataacataaagacatttc
tattatttcgattccattaaATTAACATtgccataattaatagtttagta
attactgttatacatttgggaatcatgtagagGATTCcttcgcaaaaaaa
aatcatttcaattacaTTTGGTCATCAGAGGTTGAtatgttttttgaaaa
ctctGATACTCAGGGCAACTAACTTCTATTCCACtctgcgactttttcga
atgtttggggctccaaacattcgatttttttacaTCACTTTTAGCTTTCG
AATTTCCTGCAGTagcgaaaaaaatcgaatttgcgtcaaagcacttgaaa
ggcttctatttttcaaaaatcgtcaaagtagAACTCACCAAgaaatggaa
tgaaaaatctcggtttttggtgaggtgctcgctatttCAGAGGGCACGGt
attgcgtcaaagcacttgaaaggcttctatttttcaaaaatcgtcaaagt
agAACTCACCAAgaaatggaatgaaaaatctcggtttttggtgaggtgct
cgctatttCAGAGGGCACGGtattgcgtcaaagcacttgaaaggcttcta
tttttcaaaaatcgtcaaagtagAACTCACCAAgaaatggaatgaaaaat
ctcggtttttggtgaggtgctcgctatttCAGAGGGCACGGTACAATGGA
AAAAAGCCGTACCTGTCTTGGACAGGCTAGTCATTTGAGCGAGTGTTTGA
GGAGTTAAAATAAACTCTGTTTCAAATAGAGATTGAAACTGTTAGCGGTA
TCTCTCGTATTCTCAAAATTAAAGTAGGAAAtcatattttcatcaatttg
acTACTAGTTAGTAGCATTTAATCGTATTTTTGCGACTTTTGGAGATGTG
GCTTACCCTTAAAAATCCTAACGTGAAAGGtcttggaaatttttaaaaga
ccTCCTTTCAAAACATTTCTGATATAGTTACTTCTTTTTATTGGAGGGTT
GTCCAAAACATGTTAAGAGTGTTTAACACGTCACGTACTTTATGAAATTT
AGGGTAAAGAAAACACTCTGTTTTCATAGATAATAGTtgaaaatttagtt
ttgatttatttattcatttatttattttaatttacattttttgtgTGAAA
GGCTTCATTTCAAACATTGTGTGGTTGTATCGTTAATTCTACACCTCAAA
AATTAATTTCGTGACCTAAGAGGCCTTATGCAAATATAATAATGTAATTA
AATACTTTTCAGGTGGTCTAAATTTAAGACACAACAGCAGGTTACTTCAT
TGTTGATTGGAAGTTAAAAAGAAGCGGAAACCCTGGCTTTCTCACTGTTT
TATAATCTGATAGTTTTTAATGAATATCCAAAAGTACAAACAAACTCTTC
AAGTGACGACAAAGCCAGCAGAGGCCCTACTTAAGTCTCGTTCTGAGTGA
AGACCAGAGTCAAATTAAAATTATACCACGTTTTAAATACCATCAACTTT
CTTTTCCTTTCTAAAGATcgcaaattttacacccctgtgcCACAGACTCG
TCGAGTCTCCACCTCACtcgaaaaattagccaaaatatcgttTCAGGTTG
AAAAAATAACCTAAAATATCAACCCCACCGAGTGGGACATTAGAGATAAT
tgtacttcaaaaccatccccacttcCCCACTGACGTTTTCGAGCTGCATG
CAATATATTTTCTATTNTCCCCACTTCCCCACTGACGTTTTCGAGCTGGA
TGCAATATAttttctattcccattgggattttgatagaaattttcatctc
caatgaggaaaaaagtttcaccagggcactgagacaggggtgtcatttTT
CGTTGATGACTATTTCTCAACCCAAAAATCCTTGGACCTATAAAAAACAG
CTAGAAGATGGGACTGCCATATGTCCAAGGTCGAAAAGCTATTCTCTAGA
GAGCACACATCCTGCCAAAATAGCTATATAAGGTCCGAcggg Run BLAST on NCBI transcript from alignment at scaffold_155:173590..175681 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049384 ID=TCONS_00049384|Name=TCONS_00049384|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at scaffold_155:173590..175681 (Clytia hemisphaerica)
cccgTCGGACCTTATATAGCTATTTTGGCAGGATGTGTGCTCTCTAGAGA
ATAGCTTTTCGACCTTGGACATATGGCAGTCCCATCTTCTAGCTGTTTTT
TATAGGTCCAAGGATTTTTGGGTTGAGAAATAGTCATCAACGAAaaatga
cacccctgtctcagtgccctggtgaaacttttttcctcattggagatgaa
aatttctatcaaaatcccaatgggaatagaaaaTATATTGCATCCAGCTC
GAAAACGTCAGTGGGGAAGTGGGGANAATAGAAAATATATTGCATGCAGC
TCGAAAACGTCAGTGGGgaagtggggatggttttgaagtacaATTATCTC
TAATGTCCCACTCGGTGGGGTTGATATTTTAGGTTATTTTTTCAACCTGA
aacgatattttggctaatttttcgaGTGAGGTGGAGACTCGACGAGTCTG
TGgcacaggggtgtaaaatttgcgATCTTTAGAAAGGAAAAGAAAGTTGA
TGGTATTTAAAACGTGGTATAATTTTAATTTGACTCTGGTCTTCACTCAG
AACGAGACTTAAGTAGGGCCTCTGCTGGCTTTGTCGTCACTTGAAGAGTT
TGTTTGTACTTTTGGATATTCATTAAAAACTATCAGATTATAAAACAGTG
AGAAAGCCAGGGTTTCCGCTTCTTTTTAACTTCCAATCAACAATGAAGTA
ACCTGCTGTTGTGTCTTAAATTTAGACCACCTGAAAAGTATTTAATTACA
TTATTATATTTGCATAAGGCCTCTTAGGTCACGAAATTAATTTTTGAGGT
GTAGAATTAACGATACAACCACACAATGTTTGAAATGAAGCCTTTCAcac
aaaaaatgtaaattaaaataaataaatgaataaataaatcaaaactaaat
tttcaACTATTATCTATGAAAACAGAGTGTTTTCTTTACCCTAAATTTCA
TAAAGTACGTGACGTGTTAAACACTCTTAACATGTTTTGGACAACCCTCC
AATAAAAAGAAGTAACTATATCAGAAATGTTTTGAAAGGAggtcttttaa
aaatttccaagaCCTTTCACGTTAGGATTTTTAAGGGTAAGCCACATCTC
CAAAAGTCGCAAAAATACGATTAAATGCTACTAACTAGTAgtcaaattga
tgaaaatatgaTTTCCTACTTTAATTTTGAGAATACGAGAGATACCGCTA
ACAGTTTCAATCTCTATTTGAAACAGAGTTTATTTTAACTCCTCAAACAC
TCGCTCAAATGACTAGCCTGTCCAAGACAGGTACGGCTTTTTTCCATTGT
ACCGTGCCCTCTGaaatagcgagcacctcaccaaaaaccgagatttttca
ttccatttcTTGGTGAGTTctactttgacgatttttgaaaaatagaagcc
tttcaagtgctttgacgcaataCCGTGCCCTCTGaaatagcgagcacctc
accaaaaaccgagatttttcattccatttcTTGGTGAGTTctactttgac
gatttttgaaaaatagaagcctttcaagtgctttgacgcaataCCGTGCC
CTCTGaaatagcgagcacctcaccaaaaaccgagatttttcattccattt
cTTGGTGAGTTctactttgacgatttttgaaaaatagaagcctttcaagt
gctttgacgcaaattcgatttttttcgctACTGCAGGAAATTCGAAAGCT
AAAAGTGAtgtaaaaaaatcgaatgtttggagccccaaacattcgaaaaa
gtcgcagaGTGGAATAGAAGTTAGTTGCCCTGAGTATCagagttttcaaa
aaacataTCAACCTCTGATGACCAAAtgtaattgaaatgatttttttttg
cgaagGAATCctctacatgattcccaaatgtataacagtaattactaaac
tattaattatggcaATGTTAATttaatggaatcgaaataatagaaatgtc
tttatgttatgatttctCTGtcgctgactctttttaaaaagcgtcGATGA
CAtctttgagttgtgttttcaacgacgcgaataaaaatatcaacttgcAA
TTTACTctaagatcttggattgtcgtcatggttactgttctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049384-exon-scaffold_155-1491911889:173590..175681 | TCONS_00049384-exon-scaffold_155-1491911889:173590..175681 | Clytia hemisphaerica | exon |
| TCONS_00049384-exon-scaffold_155-1510915933:173590..175681 | TCONS_00049384-exon-scaffold_155-1510915933:173590..175681 | Clytia hemisphaerica | exon |
| TCONS_00049384-exon-scaffold_155-1575043694:173590..175681 | TCONS_00049384-exon-scaffold_155-1575043694:173590..175681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_155 | supercontig | scaffold_155:173590..175681 . |
Blast
The following BLAST results are available for this feature:
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