TCONS_00049390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049390
Unique NameTCONS_00049390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049390 ID=TCONS_00049390|Name=TCONS_00049390|organism=Clytia hemisphaerica|type=transcript|length=259bp
GCAAACTTCATAAAGCTcactttttaaggaaaattctCGCATCATAATGC
TACCCTTGTTACAAGATAACACACAGGATGCAGAAAATGCTTGAGAAGAT
AGACTAAAAGCCTTTGCTTTACAAGTTCCCTTCATGCATAGACAATATTT
CTGAGTCAATTGGTATTCTGTGGTTGGGGGGTCCCTTAAGATCTCGACTT
AGAAATATTGTCAAAAGTATATTTGATAATCTAacctaatttctttcttt
tcaggTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_156:18787..19045+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049390 ID=TCONS_00049390|Name=TCONS_00049390|organism=Clytia hemisphaerica|type=transcript|length=259bp|location=Sequence derived from alignment at scaffold_156:18787..19045+ (Clytia hemisphaerica)
GCAAACTTCATAAAGCTcactttttaaggaaaattctCGCATCATAATGC
TACCCTTGTTACAAGATAACACACAGGATGCAGAAAATGCTTGAGAAGAT
AGACTAAAAGCCTTTGCTTTACAAGTTCCCTTCATGCATAGACAATATTT
CTGAGTCAATTGGTATTCTGTGGTTGGGGGGTCCCTTAAGATCTCGACTT
AGAAATATTGTCAAAAGTATATTTGATAATCTAacctaatttctttcttt
tcaggTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031351XLOC_031351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049390-exon-scaffold_156-1491911889:18787..19045TCONS_00049390-exon-scaffold_156-1491911889:18787..19045Clytia hemisphaericaexon
TCONS_00049390-exon-scaffold_156-1510915933:18787..19045TCONS_00049390-exon-scaffold_156-1510915933:18787..19045Clytia hemisphaericaexon
TCONS_00049390-exon-scaffold_156-1575043694:18787..19045TCONS_00049390-exon-scaffold_156-1575043694:18787..19045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:18787..19045 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.548109	0.498412	0	0	0	0	1.1412	0.864257	4.80162	1.79352	2.61289	0.962923	5.16882	7.80379	2.24154	5.10204	4.06222	5.88421	7.3822	5.47043	4.51306	6.22452	2.63773	5.77661	7.6895	8.64899	2.24418	0.178292	1.93137	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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