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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049394 ID=TCONS_00049394|Name=TCONS_00049394|organism=Clytia hemisphaerica|type=transcript|length=1148bp
AAGAGAGAGACTTTCTATCAGAGCATGATGAGTGCATTGCGGTAATGCAA
AGCGAAAGAGAGCACGCACACATGTAGAGAAGGAAATTTGATAAGATATA
CGGGGTATTACGAATACCAAAAAAGTATCAAGACAGAATTTACTCTGACA
GAATTTTCATTTATGTTGTAAGCCATGACAGGAAAGCAAGCAACAACAAT
TCGTTCTTTGAGTATTCGTTTTCTATGGCAGTTCATTCTATTTGTCATTT
GTGTGTTGGGTATATCAGGGTTATTGTATGTTGTGGATAAGGATAATACT
AGTTTCAAACCTGTCCGGATGAAGGGGCAATATATTGAGAATCGTCGTGT
GCGAATGGTGAACAAACTCATGAACCGTACCGCAGTGTCTGCCGTCCAAC
ATTTCGGACAAAAACACGAGTTGAAGTTTTCTGAGATTCATGACTTTGTG
ACGAATATGACTCGAGctttttattttggtgttttgaaaCCGGACATGCA
AGAGACATATACCATTTACCGAATGCCAAGACGTGGCATGAATTTTGTAC
AGGCTTTTGTTCTGACGTATTCCACACTGACTACTGTTGGCTGGGGCCAC
CATTTACCAGTAACAGACGGTGCCAAAATACTCACCATGTTGACTGCTAT
CTTCGGTATTCCGCTTACCTTCATCATGATCTTATCCGGCTCCACACTCA
TCACACGCCTCGCTAAAGAAGctgaaatcaagattttcggtAACCGTGAA
AGTGGAACGCATAAATTTGATCGTCCCATAATGGTAGGCTTCATCTTGAT
CTACATGTTTGTGACATCTTGTGTTATCATGAAGCTGGAGAAGTTGGATT
ATTTGAACGCCTTGTGGTACACTTTGATGTCGTTGATGACAGTCGGGTTC
ACTGATATCATCCAGCGACGAAGAGTGACTTATGGCCGTGAGGATGAATT
AATTGGTGTTGCCATCTTCCAAATGATATGGCTGGTGATCGGGATGATAT
TGATTGGAGGTTTCGCATTGTCTTTACTCGATCGTTACTTGATGAAAACA
AACAGCGGCAGTTTTCATCGATTCCAAATCTTCAAGAACAAAGAGGAAGA
TCTCGTTGAAAATATGGAAGAAGAAGTGTTTGAAGAACGTTCGTGAAT Run BLAST on NCBI protein sequence of TCONS_00049394-protein >TCONS_00049394-protein ID=TCONS_00049394-protein|Name=TCONS_00049394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MTGKQATTIRSLSIRFLWQFILFVICVLGISGLLYVVDKDNTSFKPVRMK
GQYIENRRVRMVNKLMNRTAVSAVQHFGQKHELKFSEIHDFVTNMTRAFY
FGVLKPDMQETYTIYRMPRRGMNFVQAFVLTYSTLTTVGWGHHLPVTDGA
KILTMLTAIFGIPLTFIMILSGSTLITRLAKEAEIKIFGNRESGTHKFDR
PIMVGFILIYMFVTSCVIMKLEKLDYLNALWYTLMSLMTVGFTDIIQRRR
VTYGREDELIGVAIFQMIWLVIGMILIGGFALSLLDRYLMKTNSGSFHRF
QIFKNKEEDLVENMEEEVFEERS Run BLAST on NCBI transcript from alignment at scaffold_156:24828..28694- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049394 ID=TCONS_00049394|Name=TCONS_00049394|organism=Clytia hemisphaerica|type=transcript|length=3867bp|location=Sequence derived from alignment at scaffold_156:24828..28694- (Clytia hemisphaerica)
AAGAGAGAGACTTTCTATCAGAGCATGATGAGTGCATTGCGGTAATGCAA
AGCGAAAGAGAGCACGCACACATGTAGAGAAGGAAATTTGATAAGATATA
CGGGGTATTACGAATACCAAAAAAGTATCAAGACAGAATTTACTCTGACA
GAATTTTCATTTATGTTGTAAGCCATGACAGGAAAGCAAGCAACAACAAT
TCGTTCTTTGAGTATTCGTTTTCTATGGCAGTTCATTCTATTTGTCATTT
GTGTGTTGGGTATATCAGGGTTATTGTATGTTGTGGATAAGGATAATACT
AGTTTCAAACCTGTCCGGATGAAGGGGCAATATATTGAGAATCGTCGTGT
GCGAATGGTGAACAAACTCATGAACCGTACCGCAGTGTCTGCCGTCCAAC
ATTTCGGACAAAAACACGAGTTGAAGTTTTCTGAGATTCATGACTTTGTG
ACGAATATGACTCGAGCTTTTTATTTTGGTGTTTTGAAACCGGACATGCA
AGAGACATATACCATTTACCGAATGCCAAGACGTGGCATGAATTTTGTAC
AGGCTTTTGTTCTGACGTATTCCACACTGACTACTGTTGGTAAGACTGTT
AACTTCTTCAGTACTGTGAGAAAGTAAGATTTAAGGACTTTTTCAAAACC
TCGATACGTCAATTTCAAATACAATTTTCTCGGCTATTGGCTGAAGTAAA
AATGGGTCATTTTTCGTTGAAAAGTTCTTTTCAAGGTCTCCCTTTTTTTG
AATTATGTCCTGAATCAATATAACTGGCGGCCGAAAAAGTCTTTCATAAA
GGAAGGAAATTTAGCTGGTTAGTACTGAAAGAGTCAAAGTAGTTGAAGGC
ACTTGTTTTGATAGAACGTGATTATTTTTAATCTTCAATGAGAACATGAG
TTAGCTCACGAGTGAAGGTAGAGAGTGTCAATCACCATATTTACCTAACA
CCATGTCTGGAAGTACTTGGGATTCGAACACAGCCCATTGCAGTGTAAAG
TCTGTGATCCAAACCTTCACACTACCAATCGGAAGAATGTTAGTGAGACA
CAGTGATAGCCTTATCCAGATGGTGAGTGAATGTATACCGAGTCTATCCT
TAGCTTAGTATGTCATGAGGTTAGTAAAGCTCAAAGTGCAGATGTAGAAC
GACAAACTCGGTATAAGATTGGTAGTGTGAAGGTTTCGATCACAGACTTG
TGCCACAATTGACTGTGTTCGAATCCCAAGCACTTCCAGACATGGTGTTA
GGTAAATATGGTGATAGGCTCTATACCTTCACTGGTATATCACTCTTCTC
TCAAACCAGCTGATAATCGAAGTTTTGATTGACGTCAAATGAGCTAACTA
AACCTCAAATTTTTTTTTTTTTTTTTCATCTCTTTTATCACCATATATAA
AATGGTATAAGTAAAAAACTTATAGACAATTTAATATATCAAATTGCAGA
TGTAGAACGATAAACTCGGTATGATAATAATATGATAATCGAATTTTCGA
TTGACGTCAAATGAGCTTAACCCTTCGTGCGCGCTGTTTTTTTGAAAAAG
TTGAAATTTTTCTAATTATTTTTTTGAAACTCAAAACTTTAAAGTGCCGT
AAGAGCTTGTAGCTTTTGATTTAGAAGATGGTTTGGTACCATTAGAAAGC
TATTTATATACTCTTGCTAAAAGCATTCGGTTCATGCCCCTTTAAATCAA
GTGGTCAGGAGTTATGGCCTCAAGTCTGAGACTCATTATTTTGGCTTGTT
TTGGACGCATACACGCGTCCCTCGTGGTCTAAGGGTTAATAAAGCTCAAA
TTGTAGATGTAGAACGATTAACTCGGTATACATGAATTAGCTCATTGAGT
ATTCTCCCTGGAATTAAAAAAAGTTTTAGATCCTTTTTTTTCAATGATAT
TGATGTTCTTGGAACAATGGCTAAGTATAATTTTATTAACATGTACTGTA
TTTTACTTTTTCTCTCCGAAGGCTGGGGCCACCATTTACCAGTAACAGAC
GGTGCCAAAATACTCACCATGTTGACTGCTATCTTCGGTATTCCGCTTAC
CTTCATCATGATCTTATCCGGCTCCACACTCATCACACGCCTCGCTAAAG
AAGCTGAAATCAAGATTTTCGGTAACCGTGAAAGTGGAACGCATAAATTT
GATCGTCCCATAATGGTAGGCTTCATCTTGATCTACATGTTTGTGACATC
TTGTGTTATCATGAAGCTGGAGAAGTTGGATTATTTGAACGCCTTGTGGT
ACACTTTGATGTCGTTGATGACAGTCGGGTTCACTGATATCATCCAGCGA
CGAAGAGGTAGGTGTTCTTCCAAAAGTTATATAACTGTAAAGTGAATGGT
CATTGGGTACATCCCTTTCTCACAGACCCGGTGGAACATCTCTCACTGGA
AAATTTAGTCAAAATATTGTCCCAGTGGAAAATTATAATCCAATTTTTGT
CCCCGCTGAAAGTGATCAGAAAATATACTACAAAATATTGAGCTATTTCT
TCTATCCCCGCTTAATTTTTTGACTTAAACAAAACTTGGAATTCGAATCA
GCAGCCATAAAGATATGGCAATATCAATACGCATCGAGTCTCAGTACGTT
ATTTTTACCCCCTTTTCAAGCACTCTTTTTGGACCTTCTAAGGTTCAGTT
GACCCTGACTAATCAAAGTATCGGGAAATTCTTTTGTTCAAAAGGGATAA
GAATGATTTTACAGATGTTTTGATTCAAAATACAATTTCACGTCTCATGC
AATCCCCAAAATCCAGTACCCGGGGGAAGGGGATTGAAACAAGACTTTTA
ATAAGACGTAGTCACACCCGGGTCTGAGGTTTTCAACCCAGACTTGTTCC
AGAAGTAGCCGGCGAAGAAATTTTTTAGAAATATGTGCTCTTATCTTCTA
GGAGATCAAATGTTATGACCTTTCAATTTTTCATACAAATGATGTCTTCT
GATTTCTAGAAAACATTTATCGCACTATTTGTCTCCCTAAACTTATCACT
ACTTTATGGTTTGATGTGTTCTAAAATCTAGGAACAACAGTTTGCCAATA
CAAACTTGTAAGATATTTGTTTTTCTCCAAGTTCTCTATAATTTTTTGAA
GTTTTGCACCAAAAAATGACTTTTTCGCGACATTGTTTTTTCATATACCT
TTTGTCTGGCTTCATAATTTCTGTCCAAAATTGTTTGAAGTACTCAGTTA
AACATATTTAAAAAGGGGAAAGGTAGGGCTTTCCAAAAATATAAGGGTTT
TTTTCTGAAGTTAATTTTTCAAAAAGTTATAACGGTTATCGTGAAAATTG
CATTTTCATCAAAAAATGTTGCGCGCAGACCGCGTAAAAATATAAAAAAC
AGCGGAGGGGAAAGGTTAACCTATATTTACCATATTTAGGGGTTTTCGCA
AGTACAATTTCCAACCCCCCGGCAATTAGCCCCCCCTCCCGGTTTATTAA
AATTTTGAAAAAATTTCCAACCCCCTGTTTATTTGGAACCTAAGAGTACT
TCGTCCTCAGTTTTGTAGGTCGCTATCAAACTGAGTTCAATGCGTAAGTG
TTGGCACTTAATGGTAAGTTCTTGATAATGATATCGTTAAAACAAGCAGA
AGGTGTGAAAATTTTTGAAGTTTCTGATCTTGTTCGAATTTTAGTGACTT
ATGGCCGTGAGGATGAATTAATTGGTGTTGCCATCTTCCAAATGATATGG
CTGGTGATCGGGATGATATTGATTGGAGGTTTCGCATTGTCTTTACTCGA
TCGTTACTTGATGAAAACAAACAGCGGCAGTTTTCATCGATTCCAAATCT
TCAAGAACAAAGAGGAAGATCTCGTTGAAAATATGGAAGAAGAAGTGTTT
GAAGAACGTTCGTGAAT Coding sequence (CDS) from alignment at scaffold_156:24828..28694- >TCONS_00049394 ID=TCONS_00049394|Name=TCONS_00049394|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_156:24828..28694- (Clytia hemisphaerica)
TGACTTATGGCCGTGAGGATGAATTAATTGGTGTTGCCATCTTCCAAATG
ATATGGCTGGTGATCGGGATGATATTGATTGGAGGTTTCGCATTGTCTTT
ACTCGATCGTTACTTGATGAAAACAAACAGCGGCAGTTTTCATCGATTCC
AAATCTTCAAGAACAAAGAGGAAGATCTCGTTGAAAATATGGAAGAAGAA
GTGTTTGAAGAACGTTCGTGAGCTGGGGCCACCATTTACCAGTAACAGAC
GGTGCCAAAATACTCACCATGTTGACTGCTATCTTCGGTATTCCGCTTAC
CTTCATCATGATCTTATCCGGCTCCACACTCATCACACGCCTCGCTAAAG
AAGCTGAAATCAAGATTTTCGGTAACCGTGAAAGTGGAACGCATAAATTT
GATCGTCCCATAATGGTAGGCTTCATCTTGATCTACATGTTTGTGACATC
TTGTGTTATCATGAAGCTGGAGAAGTTGGATTATTTGAACGCCTTGTGGT
ACACTTTGATGTCGTTGATGACAGTCGGGTTCACTGATATCATCCAGCGA
CGAAGAGATGACAGGAAAGCAAGCAACAACAATTCGTTCTTTGAGTATTC
GTTTTCTATGGCAGTTCATTCTATTTGTCATTTGTGTGTTGGGTATATCA
GGGTTATTGTATGTTGTGGATAAGGATAATACTAGTTTCAAACCTGTCCG
GATGAAGGGGCAATATATTGAGAATCGTCGTGTGCGAATGGTGAACAAAC
TCATGAACCGTACCGCAGTGTCTGCCGTCCAACATTTCGGACAAAAACAC
GAGTTGAAGTTTTCTGAGATTCATGACTTTGTGACGAATATGACTCGAGC
TTTTTATTTTGGTGTTTTGAAACCGGACATGCAAGAGACATATACCATTT
ACCGAATGCCAAGACGTGGCATGAATTTTGTACAGGCTTTTGTTCTGACG
TATTCCACACTGACTACTGTTGTGACTTATGGCCGTGAGGATGAATTAAT
TGGTGTTGCCATCTTCCAAATGATATGGCTGGTGATCGGGATGATATTGA
TTGGAGGTTTCGCATTGTCTTTACTCGATCGTTACTTGATGAAAACAAAC
AGCGGCAGTTTTCATCGATTCCAAATCTTCAAGAACAAAGAGGAAGATCT
CGTTGAAAATATGGAAGAAGAAGTGTTTGAAGAACGTTCGTGAGCTGGGG
CCACCATTTACCAGTAACAGACGGTGCCAAAATACTCACCATGTTGACTG
CTATCTTCGGTATTCCGCTTACCTTCATCATGATCTTATCCGGCTCCACA
CTCATCACACGCCTCGCTAAAGAAGCTGAAATCAAGATTTTCGGTAACCG
TGAAAGTGGAACGCATAAATTTGATCGTCCCATAATGGTAGGCTTCATCT
TGATCTACATGTTTGTGACATCTTGTGTTATCATGAAGCTGGAGAAGTTG
GATTATTTGAACGCCTTGTGGTACACTTTGATGTCGTTGATGACAGTCGG
GTTCACTGATATCATCCAGCGACGAAGAGATGACAGGAAAGCAAGCAACA
ACAATTCGTTCTTTGAGTATTCGTTTTCTATGGCAGTTCATTCTATTTGT
CATTTGTGTGTTGGGTATATCAGGGTTATTGTATGTTGTGGATAAGGATA
ATACTAGTTTCAAACCTGTCCGGATGAAGGGGCAATATATTGAGAATCGT
CGTGTGCGAATGGTGAACAAACTCATGAACCGTACCGCAGTGTCTGCCGT
CCAACATTTCGGACAAAAACACGAGTTGAAGTTTTCTGAGATTCATGACT
TTGTGACGAATATGACTCGAGCTTTTTATTTTGGTGTTTTGAAACCGGAC
ATGCAAGAGACATATACCATTTACCGAATGCCAAGACGTGGCATGAATTT
TGTACAGGCTTTTGTTCTGACGTATTCCACACTGACTACTGTTGTGACTT
ATGGCCGTGAGGATGAATTAATTGGTGTTGCCATCTTCCAAATGATATGG
CTGGTGATCGGGATGATATTGATTGGAGGTTTCGCATTGTCTTTACTCGA
TCGTTACTTGATGAAAACAAACAGCGGCAGTTTTCATCGATTCCAAATCT
TCAAGAACAAAGAGGAAGATCTCGTTGAAAATATGGAAGAAGAAGTGTTT
GAAGAACGTTCGTGAGCTGGGGCCACCATTTACCAGTAACAGACGGTGCC
AAAATACTCACCATGTTGACTGCTATCTTCGGTATTCCGCTTACCTTCAT
CATGATCTTATCCGGCTCCACACTCATCACACGCCTCGCTAAAGAAGCTG
AAATCAAGATTTTCGGTAACCGTGAAAGTGGAACGCATAAATTTGATCGT
CCCATAATGGTAGGCTTCATCTTGATCTACATGTTTGTGACATCTTGTGT
TATCATGAAGCTGGAGAAGTTGGATTATTTGAACGCCTTGTGGTACACTT
TGATGTCGTTGATGACAGTCGGGTTCACTGATATCATCCAGCGACGAAGA
GATGACAGGAAAGCAAGCAACAACAATTCGTTCTTTGAGTATTCGTTTTC
TATGGCAGTTCATTCTATTTGTCATTTGTGTGTTGGGTATATCAGGGTTA
TTGTATGTTGTGGATAAGGATAATACTAGTTTCAAACCTGTCCGGATGAA
GGGGCAATATATTGAGAATCGTCGTGTGCGAATGGTGAACAAACTCATGA
ACCGTACCGCAGTGTCTGCCGTCCAACATTTCGGACAAAAACACGAGTTG
AAGTTTTCTGAGATTCATGACTTTGTGACGAATATGACTCGAGCTTTTTA
TTTTGGTGTTTTGAAACCGGACATGCAAGAGACATATACCATTTACCGAA
TGCCAAGACGTGGCATGAATTTTGTACAGGCTTTTGTTCTGACGTATTCC
ACACTGACTACTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049394-exon-scaffold_156-1575043694:28106..28694 | TCONS_00049394-exon-scaffold_156-1575043694:28106..28694 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1575043694:26388..26723 | TCONS_00049394-exon-scaffold_156-1575043694:26388..26723 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1575043694:24828..25050 | TCONS_00049394-exon-scaffold_156-1575043694:24828..25050 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1510915933:28106..28694 | TCONS_00049394-exon-scaffold_156-1510915933:28106..28694 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1510915933:26388..26723 | TCONS_00049394-exon-scaffold_156-1510915933:26388..26723 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1510915933:24828..25050 | TCONS_00049394-exon-scaffold_156-1510915933:24828..25050 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1491911889:28106..28694 | TCONS_00049394-exon-scaffold_156-1491911889:28106..28694 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1491911889:26388..26723 | TCONS_00049394-exon-scaffold_156-1491911889:26388..26723 | Clytia hemisphaerica | exon |
| TCONS_00049394-exon-scaffold_156-1491911889:24828..25050 | TCONS_00049394-exon-scaffold_156-1491911889:24828..25050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_156 | supercontig | scaffold_156:24828..28694 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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