TCONS_00049399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049399
Unique NameTCONS_00049399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049399 ID=TCONS_00049399|Name=TCONS_00049399|organism=Clytia hemisphaerica|type=transcript|length=298bp
GTTTATTGATGTCATTTTATGTTTTGACAAATAATATCGATAAACTTTAT
GTATATACGGAAATGGTGAGTAAGACCGTTAGACCTTCAAGCTCCCTGAT
TGAGCTGCACTTTAAAAGCTAAATTAAAATACTAGAATGGTTAGAATTCT
GTTATCTGTAAACAACCCGATATCTACAGACACTCGTCGCTTTGTACCgt
attttgtataagattcccatttccgcactaagattcttgtcacttttccg
gaatctttccgctatttttcccgggataaccggcatgagattggaaag
Run BLAST on NCBI

transcript from alignment at scaffold_156:36750..37047

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049399 ID=TCONS_00049399|Name=TCONS_00049399|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_156:36750..37047 (Clytia hemisphaerica)
ctttccaatctcatgccggttatcccgggaaaaatagcggaaagattccg
gaaaagtgacaagaatcttagtgcggaaatgggaatcttatacaaaatac
GGTACAAAGCGACGAGTGTCTGTAGATATCGGGTTGTTTACAGATAACAG
AATTCTAACCATTCTAGTATTTTAATTTAGCTTTTAAAGTGCAGCTCAAT
CAGGGAGCTTGAAGGTCTAACGGTCTTACTCACCATTTCCGTATATACAT
AAAGTTTATCGATATTATTTGTCAAAACATAAAATGACATCAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031358XLOC_031358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049399-exon-scaffold_156-1491911889:36750..37047TCONS_00049399-exon-scaffold_156-1491911889:36750..37047Clytia hemisphaericaexon
TCONS_00049399-exon-scaffold_156-1510915933:36750..37047TCONS_00049399-exon-scaffold_156-1510915933:36750..37047Clytia hemisphaericaexon
TCONS_00049399-exon-scaffold_156-1575043694:36750..37047TCONS_00049399-exon-scaffold_156-1575043694:36750..37047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:36750..37047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29928	1.10294	2.16755	4.66778	0.800318	1.22878	1.54346	1.67682	3.32565	4.74337	7.39463	7.53272	3.69311	5.7046	3.30941	4.8939	9.94357	10.5109	4.76408	7.09174	17.2027	8.20944	5.19722	4.78494	0	0	12.7495	11.6647	3.409	9.50648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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