TCONS_00049407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049407
Unique NameTCONS_00049407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049407 ID=TCONS_00049407|Name=TCONS_00049407|organism=Clytia hemisphaerica|type=transcript|length=612bp
GTGCCTGTCTTCAAACACAAAGGTTCTCCCCTTGAAGTCTCTAATTATAG
gccaatttcacttttatctaacattgaaaaaatttttgagaaagtgaTGT
ATTCACATCTCtctgattttcttgaaaaccatAATCAAATCTACCCTcga
caatttggttttcgtaagGCTCACTCTACTGAGCATACACTAATTAATAT
TGTCGAACGTATCCGAAACTATCTTGATAATGGTGGGGTGCCTGTGGTGT
ATTTGTCGATCTACAAAAGGCTTTCGACACAGTTGATCACGAAATCTTAC
TTGAAAAACTCGATCACTACGGAGTCAGAGGCATTGTTAATGACTGGtgg
gccaaattgaaaagtcccgtttctgtcacggaaggaaatcagagcctttt
ttagtctatttttgaaaaatggtaaactTAATGAAAATAGTATTAATTAG
TCCTGAATTAAAGCCTTTATAGTACTACTACTTCCaaaccaaaataaatt
tcatgaaaGTTTATTTCCATatgcatatttccatggtgctgaagcgattt
agaggatttagaaccagctaggaacagtagttttgccagaaaaccggttt
ttaggcctccag
Run BLAST on NCBI

protein sequence of TCONS_00049407-protein

>TCONS_00049407-protein ID=TCONS_00049407-protein|Name=TCONS_00049407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
VPVFKHKGSPLEVSNYRPISLLSNIEKIFEKVMYSHLSDFLENHNQIYPR
QFGFRKAHSTEHTLINIVERIRNYLDNGGVPVVYLSIYKRLSTQLITKSY
LKNSITTESEALLMTGGPN
Run BLAST on NCBI

transcript from alignment at scaffold_157:22699..23310

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049407 ID=TCONS_00049407|Name=TCONS_00049407|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at scaffold_157:22699..23310 (Clytia hemisphaerica)
ctggaggcctaaaaaccggttttctggcaaaactactgttcctagctggt
tctaaatcctctaaatcgcttcagcaccatggaaatatgcatATGGAAAT
AAACtttcatgaaatttattttggtttGGAAGTAGTAGTACTATAAAGGC
TTTAATTCAGGACTAATTAATACTATTTTCATTAagtttaccatttttca
aaaatagactaaaaaaggctctgatttccttccgtgacagaaacgggact
tttcaatttggcccaCCAGTCATTAACAATGCCTCTGACTCCGTAGTGAT
CGAGTTTTTCAAGTAAGATTTCGTGATCAACTGTGTCGAAAGCCTTTTGT
AGATCGACAAATACACCACAGGCACCCCACCATTATCAAGATAGTTTCGG
ATACGTTCGACAATATTAATTAGTGTATGCTCAGTAGAGTGAGCcttacg
aaaaccaaattgtcgAGGGTAGATTTGATTatggttttcaagaaaatcag
aGAGATGTGAATACAtcactttctcaaaaattttttcaatgttagataaa
agtgaaattggcCTATAATTAGAGACTTCAAGGGGAGAACCTTTGTGTTT
GAAGACAGGCAC

Coding sequence (CDS) from alignment at scaffold_157:22699..23310

>TCONS_00049407 ID=TCONS_00049407|Name=TCONS_00049407|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_157:22699..23310 (Clytia hemisphaerica)
tcaatttggcccaCCAGTCATTAACAATGCCTCTGACTCCGTAGTGATCG
AGTTTTTCAAGTAAGATTTCGTGATCAACTGTGTCGAAAGCCTTTTGTAG
ATCGACAAATACACCACAGGCACCCCACCATTATCAAGATAGTTTCGGAT
ACGTTCGACAATATTAATTAGTGTATGCTCAGTAGAGTGAGCcttacgaa
aaccaaattgtcgAGGGTAGATTTGATTatggttttcaagaaaatcagaG
AGATGTGAATACAtcactttctcaaaaattttttcaatgttagataaaag
tgaaattggcCTATAATTAGAGACTTCAAGGGGAGAACCTTTGTGTTTGA
AGACAGGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031361XLOC_031361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049407-exon-scaffold_157-1491911889:22699..23310TCONS_00049407-exon-scaffold_157-1491911889:22699..23310Clytia hemisphaericaexon
TCONS_00049407-exon-scaffold_157-1510915933:22699..23310TCONS_00049407-exon-scaffold_157-1510915933:22699..23310Clytia hemisphaericaexon
TCONS_00049407-exon-scaffold_157-1575043694:22699..23310TCONS_00049407-exon-scaffold_157-1575043694:22699..23310Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049407-proteinTCONS_00049407-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_157supercontigscaffold_157:22699..23310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02296	1.85059	1.99861	4.10672	3.4155	2.34739	1.898	3.09881	2.08693	2.13028	1.2575	2.88952	2.03647	3.66967	0.760336	1.0958	2.05181	1.27359	1.62788	1.95656	1.73877	2.99991	0.557671	1.29926	3.09319	3.56538	2.26761	3.1021	1.54364	2.27284
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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