TCONS_00049414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049414
Unique NameTCONS_00049414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049414 ID=TCONS_00049414|Name=TCONS_00049414|organism=Clytia hemisphaerica|type=transcript|length=3338bp
GTTAAATCCGACTGCATGACGATCCATGACACTTCAAATTTTTGTTCTTC
ATCACCAGATGCCAGACAAAGACTGAGAGaaatatcGGAAGTAATATGGA
GAAGATTTTAATTGGTGTGCTTAGTTCTGAACAACCATTTCAACTAAAGA
AAACATTAGCAATTCAAATAGCCAATGCTGGcaagaaaaatattgattat
gctaattttgaaaacttggtGAAAGGATGTTTGAAACAATTATTTGAAAC
CGATTTGAAGCAGCTTTCAATGGACAAAAACTCGTCAGAATTAATCCTCT
TAGTTTTGAAAAGTTGgctaggaaattttgaattgaccAAAAGATATTTT
GATGAAGAGTTTATGaacaaatctttcaaaactATTGATGCAACCCGTCA
AATAACATTTTTGAGGAAATTACTATTAGTCCTGGACTCTTTATTCAGCT
CAAAACAGAAATTTAATGCCAACAGTTTGGAACAAATGCAGTTTTACTTT
TATGATACATTCACATTGGCTACAGGCATTGAAGAATTTTCATTGATTTG
TAATGCCTACCTGGAATACCCTCACTTACTACCCAAAGATTTATCACNAC
ATTCACATTGGCTACAGGCATTGAAGAATTTTCATTGATTTGTAATGCCT
ACCTGGAATACCCTCACTTACTACCCAAAGATTTATCACCGAGCTCTGTG
CAAAACATTGTCTCCATTTTTGTTAAAACCTTATCACTAACCCCAATTTC
GCAATTCATTGCATTGGAAAATAATGATGGCAATAATGTCCAAAGTGtat
ttaaacttttaaacttaCTTCTTGAGAAGgatcgaaagatttcaaatttg
attggaAATGCGTTATTCAAAGCCCTCACAACAGACGGGAAACATCCTTC
AATTTGTATTGCTAAATTGTTGAAGTGCTTGAATTTGGACGAGTTATCTT
TATACATCAATGAAGTGGTGAAATCACAATTGACTGATGACACTTTGACT
TTGATGACATGTCGGCTGGTAGATTGGATCTGTTTACCAGACCCTGCAAT
TGCCACTGATCAATGGGTGATGCAAGTACTGAAATATTTGATACAACACA
AGAAATATCAAGTACTATCTTCTGTTATTGATGGAAAAATTAATCAGATC
TTTCACCTCGTATATTTACCAGTCTTTCGGAGGAGATCTTTGTCTTTGAT
GACATTTATGTTGATTAGTTATTTACATTCTCCAAAGCCTTTTCACGagA
TAGCAGTGCTTATTCCTGACTTGGTCGCACaattgaagaaagaagaaacc
CCTCAAGCTACCAATGATGTGGTTCTGCTTGGTGAATTAAGTTTCACGCT
AATGTATCAATATCCCGGCTTCCCTGATATTTATGAAAAGTTGTTGGCTT
CTTTACAGGGAGTTCCTAAGCCTTCAGAAGAAAAGATGAACACTTGGTTA
AAATCGAGCTTTTCAATATCTCAAGAAGAACTGCCTCAAGTCATTGTCCC
AGAGAGGTTACCCAACACCAAAGTTGGATTGGATAACCTTGGGAATACAT
GTTATGCCAACAGTGTCATTCAAGCTCTTTTCAATCTCGCACATGTGCGG
AAAGTATTGTTGGAGCGAGAAACCGATATGACTTTATCAACCACAAAATC
TATTCAAGAATTATTTGGTCTGTTGTTACTTACAAAGcgCTCTTCCATCG
CACCGAGAGTCTTTTTAAACCTTTCAAGACCACCCTGGTTTCAATCTGGT
TTCCAACAAGACTGTTCAGAGTATCTCAAATATCTATTGGATAAACTTCA
AACGGAGAGTAGTAAAGACACAAGCAAAGATATCAATCAACTCTTATCAG
GACAGATTCGAACGTCAGTGGAATGCCTCAATTGTGGATTTGTATCCTCA
CGCGAAGAGGTCTTTAATGATATCCCGCTATCGTTTAATCAGGAGCCCTT
GGTAGCAGGCGGAGAGAAGGTTGTTCATACTTTGAAAGGGGGTGACTCTT
CTGACATGAAACGTAAAATAGGATGTAAATTATCGGAGGCTTCTGATGCC
AAACAGACAATGACTGATGATACAATTTCAAGTTTAGATACACCTTTTGT
TGACTTGACTGCTACTGAAACACCACCTGATCCATtacaaaagttcaaaa
ttcaagaaatgATGTGTAGTTATCTCTCACCAGAACTGTTGAATAATTCC
AATAAATATTACTGTGAGACATGCGCCTCTcttcaaaatgctcaaaagaC
CATGAACATCTTGAAATATCCGAAATATTTGATTCTAACTATGAAAAGGT
TTACGTATGACGTCAAAACACAAAAACGTTCGAAATTATTACACGTGGTT
GATCATCCACAGACGTTCGATTTCTGTAATGAATGTGCTCGATGTCACAG
TCAAAATCGTGTTGATTCAGACGAATCTGTAGCTGGTTCATCGAGTCAAA
ACACGACCAAAAACCGAGAATGTAATTCAGGGAACGCAACTCATTTCCGC
TTGTTATCGGTAATCGTACACTCCGGACAATCATCAGACAGTGGACATTA
CTACGCTTACACGTGTGAATATTTGGAAGATGGGAATATTAAATGGCTTT
TATTGAACGATTCAAGAGTTTCTTCTGCTCCTAACGACTGTGTCAGCAAA
CTCAGTTCCAGGTTTCCACAAGATACTCCTTATGTTTGTATATACGAATG
TTAtgagaaaaatgaggaaaaGCAAAAGGAGGATGAGAAAGAACTTGTTA
TtaatactcaacaaaaaatcttggattttGTTAATGCCGACAACATGGCT
TACGAGAGGGAATTGCAACGTGAGGTGATTCGTAAACGAAAGACTTTCAC
ATCCAATTTCAATAATGATAAGGATGAGGATGGTTTCGGACCTTGTGGAC
CTACTGGCGGTGGAGGAGGTGAGATTGATGGGTCCAAATTTGTTTTCTGA
AAGACCAGAATCACGTAAATCATGATTTCAGCGCTATAAAATGATCATAG
TGGCTGTGGTTGTTATTCTCTCTTCTTTACAGTATAATACTTTCTTATcg
ttgttttgatgctggattCAGTTTTTAATTAATTCAACATTACGCCGCGT
CCTACAAAACTTCTattattcattttcatttcGCTTCATTTTTAAATTCC
TTGTTTTTATGAATTAAATTAATTCCAATTCGAAGTCACCCATCATCGAC
TCTATTAAGATAAcgtttttctgattatttttcaaataatgTCTCTACTT
TTGTGTTtctcaaattaatatttttgtacAGAAATGATAATATTTTTGCT
AAGAATTTAGTTTACGATTATGTTAATAATTAGAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_158:34334..48338-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049414 ID=TCONS_00049414|Name=TCONS_00049414|organism=Clytia hemisphaerica|type=transcript|length=14005bp|location=Sequence derived from alignment at scaffold_158:34334..48338- (Clytia hemisphaerica)
GTTAAATCCGACTGCATGACGATCCATGACACTTCAAATTTTTGTTCTTC
ATCACCAGATGCCAGACAAAGACTGAGAGGTCATTAAAAAAAGAAAGAAT
TGTACTTTTTAGATTAAAAACTGGGAGTCTGAAAAAGGTTAGAGTCTGGG
TCAAACCATGATATTTTTAAGGAGATTGAATTTACAGAAACCAGTTTTAT
AGCCGTTTTTTATAGGGACATGTTCATAAATGATGAGTAAATATTGGCCT
TTTGGAGACATTTGAAATGACTGTTACAATTTTACTCATGATAAAAATGT
AACAAAATTTCCGAGGTCCTAGCTGCTGCAGTGGTTTAGCTATATAGCTG
AGGTTTCTTAAGATAATCTTGTATCAACAAGAGACTTGATTAAATTGGAG
CTATGAAGGTTCTTTTCAGGGTCAGTGAAATGATAAAAAAGTAACAAGCA
AGAAATAAATCAGATGATAAAAATGGCCATAACTCATGAAATATGTATTG
TAAAGATGTGAAAATGTTACACATCACAGGTTATACATACACGGACCTTC
ATTTTGAGTTTCATGCATCAATGGCTGCTCATCTGATAAAAAAGTAACAT
TTAAAATCCTTGAAATTGATACTTTTAAGAACCCTCGAACCAAACAAAAT
CCAAGTAAAATTATTTTTCTTTTGTGGTTTATTGAACAAAATAGGTTGGA
ATTGTGCTTTATATATATTTTTAAATTGTAGAAGGCCTAAAAAGGGTAAT
TTTGTAACATCAAATTCAACTCTTTCATAATATTGGCATCTTTTTTATAT
ATGTTACATTTTTACATGATTGACATTAAAGAGGTTTCAGAGATGAATTT
TATTTCTTCAGAAGGAAAGTAACATACTAAAGCACTAGTTTTCATGTTAA
TAAGTCAACAGTATTGGGTCATTTAGTGATAATAAAGTAACAAAATTGCT
ATCTTTTCGCAATTTTTCCAGTTTTGTTACAAATTTATCATGTTTTTATC
GACTTTTAAATAGGCATTGGATGGTTTTAACTAGCCATAGGGTCAATGAA
TGGAAATAGTGACCCTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAATGCACGACGGGCAGCTGTAAAATCCCACCCTT
CATATATTTGTTTCAATCCGTGATCCGTGGCTTAGGTTTTTTCTCATCTT
CAATTTACTGAAGAAAGCAGGAAGTTGACGCGAGAGTTAGATTGTCAACA
AAGTGCCGTAAAAAATATCATTGAATGAAAGAAGAACTTAAAATCTTAAA
TATTTTCATTTTGAAGAATGGGTGCAAAAAAGTGAAACATAAAAAAGTTT
CATTTTTCATTGCTTTAATCGAAATGGGGGATTTGAAAAATTTTCTCTGT
CTTGAGTTTTTTGCTATAACCCCTGTAACTATGAGCGAGCACCCTGTTGC
TAAGATGTTGGCTTGGGTTGGTCTAAAAAGCAGGGTAGCCAATGGGGTAG
CCAATTGGGCTAGGTTATGGGGTATCTCTTTTTGCCTAAACTTTTAAAAT
CTGAAACCTGTTTTTTGTGGAAATAACTATTACAACATCTTGTTAATGAT
TCCATGTAATAAAATTTAAGATTCCTTTCAAACTTCAGCCACAATAGCCT
TTTTTCCAAAGGTACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTTACAGACCCGAATAAAAAATATATACAAAACAG
TTTTTAATATTTTAGATTTAGATTTTATTTATGTTTTTAATTGTTATTTC
CGTGAAGCTGTAATTCGATGATAATAGCTTTGGAATCGCCTTTGGGCCAT
ATGATCTCTAATCTTGTCATATCTTAACAATCCTTTGACATTGAATCTAT
TGTTTAATTTAAATCACGTTTAGATGTTTCAAACAGTTCATTCCTTTCAA
AATTTTTAAATATGGCAGCTTATAATAGGTACAAAAGGTCTTTTGGAATA
GCTCTATTATAATGAAGCTCTATTTCTTACTTCTCGTGCATTAACAGTGG
TAATTTATATCTTTGTTTATCTTTGGAATCATACATGATCAATCTAAGTA
TCAATCAGATTCATGCTCCCTGGTCAGTAAAATGTGGTTCTATGCATTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCATTTTCGGTATTTCTAT
TCTGGTCTGTAAAATATTTAGGTACCCCACAACCTAGCCCAATTGGCTAC
CCCAATTGGCTACCCTGCTTTTTAGACCAACCCTGTTGGCTTGAAATCAA
AAATAAAACCACTCAAAACGAAAGTAAAATCGGCCCGCACTCGACATCCC
ATAATCTTGATATACAAGTTTAAGTTTATACTGCCTGTGAGAAATTTATA
CCGAAAACTGCGACAAAAACAAAAGTGGTCTCTTCTACTGATTGCTTTGC
AGCGCATTTTTGCAGACGTTTTTTTATAATTTCCACCAATGGTCCTTCGC
AGACTGTTTATAATTTCCACCAATGTGATTGCTGTATTTTATACAGTGTT
TCGTTTTGGCACCCTTGGCCTCTCAGTGCCTTGCAGGACAAGCAGGCAGT
TGTAAAATTGCACCCTTCATAACACCTTTTTTATTTGTTTCAATCTGTTA
TACTATGGTGTAGACTATTTCTCATCTACAAATTCTTTGAAGCAAGCAGG
AATTTGATGCGAGAGTTAGATCGTCAACAAAGTGCCGTAAAAAATCATTA
AAATACCTAAAAGAAAACTTACAATCTTAAATATTTTCATTTTGAAGAAT
TGGTGCAAAAAAGTGAAACATTGAAAAGTTTCATTTTTTATTGCTGTAAT
TGAAATTGGGAATTTAGAAAATTTTCTATGTTGTTTTCTAAGATGTTGGC
TTGAAATCGAAAATGAAACTACTGAACAAGACAGGGGGGCACGCAGTTAC
TACAAGACATGATGTGTAGTAAGTGCTTTTTCAACACTTTTTTTCAGGAC
CACCACCCTTTGCAGTTACTACACCTTGGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCACCCCTGTTTTTGAGTGATATCATCAAAAACATGCTCGAAATTACC
CTAAATTGCGATTATTTTTCAACCTAAAGCCATTTTTGTGCTAGATTTTC
TTTTAATTTGCTTGGTTAACAGCTGTTGAGAACATTTTAATGATAATTAG
GGAAAGCATAATTTCAATGAGAAAAATTTCAAATTTTTTTTCATCCATTT
ATAACAAAAATATTTTTTTTAACAAAGAATTTTTTCACAAAAAAATTCAT
TTTTTGTGNTGTAGTAACTGTTTTCATAACTTCTGAATACAGTACCACCA
CGGTAGTAAGTGTCATACTGTCTTGTAGTAACTGCGTGCCCCCCCCTGAA
CAAGAAAGTAAAATCGGCCCGCACTCCAATTCCTTTAATCTTGATATAAG
AGTTTTAGTCTAAACTCTCCAATTCTTAATTTTTCGCTTAGAGAGTGCGA
GCCCTAATATTTTTTCTCCCGGACTTCAGGGGAAAATGAAAGGAAGAACT
TGCCAAAAAAACCCAATGACAAAAAGATGTCTTGCAAGGTTTTGGAATAG
ATCCTGTGAAGATGAAAAGATCCCATAAACTCTAATTTTGTTCTTCCCTC
AAGTTAAAAAGGTTAAAGGGTTTGGGCAATTGAGGCAAAAATCAGCAAAA
AGGCTGGTAAATCCCTAAATCTAAGAATCACTAAAAGATCCTCACTGATA
AGGCCATTCAAGAAAATTTATTTTCACAAGAGTTCTCGACAAAATAGCAT
ACGCTTAGCCTGATAGTTCTATTAATTAATAATCACATAATACGCTAATG
TACATTTCATGATATCATGATATTGAAAATAAAAGTAATTAAGAATACCT
AATAAAATGAAAACAACTAAAGCTAAATATGGCTACAATAAGAAGTAGTT
AATGCAGAGCTAAGAGTAGCGAGATGTGACTGGAGCTGAAAGACTATCAC
AAGGATATAGTTAATAGTGTATAGTACAGTGAGAGGCTAAGGACAAGGTG
ATGATGTAGACCTGAAAGACTTGTGATTTTATAAAACATTGAAAAAAAAA
ATTAATGTATATCATTAAATTTTTTAGATAATAATAATATATGATATGAT
TACTTACAATACAATTAAATATTATAATTCAGTAATATAAATAAGAATAA
AATAAAAAGAAAATAGTGAATAAATAGATTTTGCCTTGATTACACGACCT
GAGCTGAATAGAAAATAGAATTAGTGAGATGATGAATTGATTGAGACTAG
AGACTAAGGAGGCAGGAAATTAGNGCCTTGATTACACGACCTGAGCTGAA
TAGAAAATAGAATTAGTGAGATGATGAATTGATTGAGACTAGAGACTAAG
GAGGCAGGAAATTAGGATGGTTCCAGTTTTTAATGTTTGAATCGAATCAC
AAGCACAAGAACAAAATTCAATTCCTAACAAACAAAAATTTCAAATATTT
CATTTGCCATGAAATGAATATAAACAAAAGTACATCATCATAAATTACTT
ACAGCTACTCCAAGTTTGATTTAATAGTAAGATACCTTTTGAAATTAGAT
TAGATCATCTAGGCCTCCCAAAAGTTCTATGTCCTCCAAAAAAATTTCAT
TTAGGTTTCTGTTGTTTTTAGACAACAGCTATCNATTCTATGTCCTCCAA
AAAAATTTCATTTAGGTTTCTGTTGTTTTTAGACAACAGCTATCGGTAGT
ATTTAATTTAGAAAGATTTTTAGAAGCGATTCGATATAATTAATCTTAGC
AACATGATTTTATCCATTTTTTCATTTGGACATATCATGACCGATACAAA
AGGTTTTCAGTCAGTCAAATGGCTTTTCCAGTTGAACATTGACCAATGAC
CAAAGCTTATTTGCAGTCTCTGGAACTTGGCTCTGGCAGATTCAATGGAA
GTTGTTGCTGGTTGTTGGAATATTTANACATTGACCAATGACCAAAGCTT
ATTTGCAGTCTCTGGAACTTGGCTCTGGCAGATTCAATGGAAGTTGTTGC
TGGTTGTTGGAATATGTTTACAAGGTTCTTGACAGAAAATCCTTTGTTTG
ATTGTCAAATGATGACAGTGTTGTTATTAATTTTGTTAAATCTGACAAAT
TGATGATGAGAGCACTTTATAGTTTTGACTCCCATTGAAAAATCATATTT
TGGTTTTCATGTTACTAGATGCTGTTTTAGGAGCTTTAGAGCTAGCCTGA
CTATAAGTCTTATCAGTGATTCATGCCCAACTTGCTAACCACAAGGCAGG
TCACCAAACTGCTGAAATTTATCAAATCTTTAAAGTGATATTTTAAAGAA
GTATTAGGGAAAACCAGAACTCACAAGTAAGGCTAACTGTTATGTAATCA
TGTTAAGTATATCATTTTAACTCCATGAATTAACGACGAGAACAAAATAC
GTAATGACTGGTGTTTGGATGTACTCAATGTACTCCCGTCGTTGATGAAG
ACTAATCCAACTTCCCTCAAAGATAAAGCTAGAGATCATCAATAAAATAC
CATCTTTATCATCCTAGGGGTTTTGATGTGGAAGCAAAACCGGCTTTTTC
GGCAAAGGGAACCCTCTAGTCTACAGTATTCTAAATCTTATTCTCCCTTT
TATTTTAGAAATATCGGAAGTAATATGGAGAAGATTTTAATTGGTGTGCT
TAGTTCTGAACAACCATTTCAACTAAAGAAAACATTAGCAATTCAAATAG
CCAATGCTGGCAAGAAAAATATTGATTATGCTAATTTTGAAAACTTGGTG
AAAGGATGTTTGAAACAATTATTTGAAACCGATTTGAAGCAGCTTTCAAT
GGACAAAAACTCGTCAGAATTAATCCTCTTAGTTTTGAAAAGTTGGCTAG
GAAATTTTGAATTGACCAAAAGATATTTTGATGAAGAGTTTATGAACAAA
TCTTTCAAAACTATTGATGCAACCCGTCAAATAACATTTTTGAGGAAATT
ACTATTAGTCCTGGACTCTTTATTCAGCTCAAAACAGAAATTTAATGCCA
ACAGTTTGGAACAAATGCAGTTTTACTTTTATGATACATTCACATTGGCT
ACAGGCATTGAAGAATTTTCATTGATTTGTAATGCCTACCTGGAATACCC
TCACTTACTACCCAAAGATTTATCACNACATTCACATTGGCTACAGGCAT
TGAAGAATTTTCATTGATTTGTAATGCCTACCTGGAATACCCTCACTTAC
TACCCAAAGATTTATCACCGAGCTCTGTGCAAAACATTGTCTCCATTTTT
GTTAAAACCTTATCACTAACCCCAATTTCGCAATTCATTGCATTGGAAAA
TAATGATGGCAATAATGTCCAAAGTGTATTTAAACTTTTAAACTTACTTC
TTGAGAAGGATCGAAAGATTTCAAATTTGATTGGAAATGCGTTATTCAAA
GCCCTCACAACAGACGGGAAACATCCTTCAATTTGTATTGCTAAATTGTT
GAAGTGCTTGAATTTGGACGAGTTATCTTTATACATCAATGAAGTGGTGA
AATCACAATTGACTGATGACACTTTGACTTTGATGACATGTCGGCTGGTA
GATTGGATCTGTTTACCAGACCCTGCAATTGCCACTGATCAATGGGTGAT
GCAAGTACTGAAATATTTGATACAACACAAGAAATATCAAGTACTATCTT
CTGTTATTGATGGAAAAATTAATCAGGTATTGCATGTGAACCTCCTTTAA
TTTGACTTTTTTAGTTCTCTCTTGTTCTCTTGGTCATTTTGAGTAATTAT
TCTCATAAGTTCACTGTACTCTCAATAGTATAAACCAATTTATCTATCTC
TATTTCCCAACCAGCTTACCTAGTAGGAAAACATTCATTTATCATAATCA
CCATATCGTTCCTTTTTCAGATCTTTCACCTCGTATATTTACCAGTCTTT
CGGAGGAGATCTTTGTCTTTGATGACATTTATGTTGATTAGTTATTTACA
TTCTCCAAAGCCTTTTCACGAGGTAAATTTTTATTTACTTAGCTTTTTTC
TATTTTTTAAAGGGAAAATTTAGTGTTTTTAATGAACTACGGCAAGTTTT
TTTAAAATTGAAATAAACATTTTTGCTGAATGTCCAGCCTTGTGTTGTTG
GAATTGAAGATAAGTCAAATAAACTTTTGACTGCTTGTAATGAAGTTAGT
TTAACTGAATGAATAAATATCTCACTTGTATGCTTGTAATGAAGTTAGTT
TAACTGAATGAATAAATATCTCACTTGTAGATAGCAGTGCTTATTCCTGA
CTTGGTCGCACAATTGAAGAAAGAAGAAACCCCTCAAGCTACCAATGATG
TGGTTCTGCTTGGTGAATTAAGTTTCACGCTAATGTATCAATATCCCGGC
TTCCCTGATATTTATGAAAAGTTGTTGGCTTCTTTACAGGTAACTTATAA
ATTCTTGAATTACATTGAATTGGTCCTGTTTGTAGTAAGAATTTTCCTTC
AGTCTTTACTGAATTGGGCCATAAAAACTTAAATTAAATATTCGGTTGTT
TTTTAGGGAGTTCCTAAGCCTTCAGAAGAAAAGATGAACACTTGGTTAAA
ATCGAGCTTTTCAATATCTCAAGAAGAACTGCCTCAAGTCATTGTCCCAG
AGAGGTTACCCAACACCAAAGTTGGATTGGATAACCTTGGGAATACATGT
TATGCCAACAGTGTCATTCAAGCTCTTTTCAATCTCGCACAGTAGGTGTA
ATTCTCTTCTTGCCCTTCTTGTCCATTCTATGCCTGGAGAATACACAAAT
AGAATGGGTTTAAAAGGGATGGTATTAGATCACGTAGGTTAAAACTATAG
ATAAACCTGTGTTCATTTGTTAGCTAGTTTGTTAGTTACCAGTTTCACTC
GGGATTCTGTAACCATAAACCCCCAAATGCTACGGAGCCAAATTCCCAAA
GAAAAATTTGAGGTAAAACGGCTAAAGAACAGTGGTAGCTATGGTACCAC
TGTATGGAAGATCTACACCAAATAATTCAATTTTTGACTAGATGGGCCTG
TCTTCATGCATATGAAAATGTAATTTCATTTTCTTTACAAGCACAACCCG
ATTAACTCGTGATTGATTCAAGTCATTCAATTATTTATTATGATTTTGAA
TTTAATCTTTTCCTTTGATTAACCAGGTAGGTCCATAAATGCACCACTTG
TTTTCTTGCTTTCAGTGTGCGGAAAGTATTGTTGGAGCGAGAAACCGATA
TGACTTTATCAACCACAAAATCTATTCAAGAATTATTTGGTCTGTTGTTA
CTTACAAAGGTCAGCTATTAATCTCAATAAGTACTAGTAATCGTATGGTT
TGGAGTGCAATTAACGATTAATCACGAGTAACAAAGGAGAAAATAGTAAT
TTAAGTCCGAAGGACGAGTGCAAATTACGGTATTTTCTCCTTTGTTACTT
TTTTTATATTGAAGAAAAAAAATGTCTTTGTTTTTTATTATATAGTAAAA
TAAAGTCTCTGACACAGGACTTGGGAGAGAAAAGAACAAGGGCACAAAAG
TGTCCCCCCGCCGAAGAGTGCAAAAAGTGGTAATAGTGCAATTAACGATT
AATCGCACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCAAGGCTGAC
GATTACTCCGAAAATATCCCATTCAGCTACAATTCATGCCTATGGTAACA
TGTTTTGCCGAAACATCTATTATTAAAAATTTTCATTAGAACCCCCCCCC
CTTTATTAATTTTTAAGAATATTTTCAGTTGGCAAAAAGAAGTACCCTTG
TTTTGCTCCAAAAAGCCTGATTTTAGCCTATTTTACCTTATTTTTGGGTT
TTCAGAAGTACAATTTCCAACCCCCCGGTAATTAGGTTCCCCCTGTTTAT
TATTAAAAAAGTTTATTAGGTCCCCCCCCCTGTTTATTTGGCACCTAAAA
GTACATGCTCGATTTTTTTTTGAAAATTTGGTGCTGAATATGTTAATATT
ATTTTCTTTTCTTAGCGCTCTTCCATCGCACCGAGAGTCTTTTTAAACCT
TTCAAGACCACCCTGGTTTCAATCTGGTTTCCAACAAGACTGTTCAGAGT
ATCTCAAATATCTATTGGATAAACTTCAAACGGAGAGTAGTAAAGACACA
AGCAAAGATATCAATCAACTCTTATCAGGACAGATTCGAACGTCAGTGGA
ATGCCTCAATTGTGGATTTGTATCCTCACGCGAAGAGGTCTTTAATGATA
TCCCGCTATCGTTTAATCAGGAGCCCTTGGTAGCAGGCGGAGAGAAGGTT
GTTCATACTTTGAAAGGGGGTGACTCTTCTGACATGAAACGTAAAATAGG
ATGTAAATTATCGGAGGCTTCTGATGCCAAACAGACAATGACTGATGATA
CAATTTCAAGTTTAGATACACCTTTTGTTGACTTGACTGCTACTGAAACA
CCACCTGATCCATTACAAAAGTTCAAAATTCAAGAAATGATGTGTAGTTA
TCTCTCACCAGAACTGTTGAATAATTCCAATAAATATTACTGTGAGACAT
GCGCCTCTCTTCAAAATGCTCAAAAGACCATGAACATCTTGAAATATCCG
AAATATTTGATTCTAACTATGAAAAGGTTTACGTATGACGTCAAAACACA
AAAACGTTCGAAATTATTACACGTGGTTGATCATCCACAGACGTTCGATT
TCTGTAATGAATGTGCTCGATGTCACAGTCAAAATCGTGTTGATTCAGAC
GAATCTGTAGCTGGTTCATCGAGTCAAAACACGACCAAAAACCGAGAATG
TAATTCAGGGAACGCAACTCATTTCCGCTTGTTATCGGTAATCGTACACT
CCGGACAATCATCAGACAGTGGACATTACTACGCTTACACGTGTGAATAT
TTGGAAGATGGGAATATTAAATGGCTTTTATTGAACGATTCAAGAGTTTC
TTCTGCTCCTAACGACTGTGTCAGCAAACTCAGTTCCAGGTTTCCACAAG
ATACTCCTTATGTTTGTATATACGAATGTTATGAGAAAAATGAGGAAAAG
CAAAAGGAGGATGAGAAAGAACTTGTTATTAATACTCAACAAAAAATCTT
GGATTTTGTTAATGCCGACAACATGGCTTACGAGAGGGTAAGGACTTATA
TCAAATTAATGGCTTCCTAGTGGTAGACTACTATCATCCTCGCCTACACA
TGAAACTCTGATGATATCTTCATTTCTTTTTCTCGATCTGCTCCAAGGGA
TTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCC
ATGTCCGTTCGTCCGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGA
TTGGCTCATTAGTTTTTACTGATTTTTTGCACAATGATGCAAAATGGCAA
TGCCCAAAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATTTGGGCA
AATTTGGGCCAAAAACTACCCAAAAATAGGGTTTTTTGGACTTTGTGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTCT
CTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTAA
AAAACGGATTTTCGTATTTTAGGGAAATTCCCTTTAACCAAATAAGCTTT
TCTCAATGTTGACTCATAATTTTTTTCTGATTTTTTGCACAATGATGCAA
AATGGCAATGCCCAAAATGTGACGGAGCCAGATTTTTAAGGAAATTTTTT
TGGGCAAATTTGGGCCAAAAACAGCTTAAAAGGTTTTTTGGGCCAGAATG
GTTTAAGTGATTTTCGTATTTGGGGAAATTCCATTTTACCATTTTACATT
ATTCAATACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTATT
GTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATT
CAGCATGTTGCTTGTTTTCATTTTTTTGAACTTTACCTCTACCCTCTATT
TAACGATCCTTTTTCTTGTATCATAGGAATTGCAACGTGAGGTGATTCGT
AAACGAAAGACTTTCACATCCAATTTCAATAATGATAAGGATGAGGATGG
TTTCGGACCTTGTGGACCTACTGGCGGTGGAGGAGGTGAGATTGATGGGT
CCAAATTTGTTTTCTGAAAGACCAGAATCACGTAAATCATGATTTCAGCG
CTATAAAATGATCATAGTGGCTGTGGTTGTTATTCTCTCTTCTTTACAGT
ATAATACTTTCTTATCGTTGTTTTGATGCTGGATTCAGTTTTTAATTAAT
TCAACATTACGCCGCGTCCTACAAAACTTCTATTATTCATTTTCATTTCG
CTTCATTTTTAAATTCCTTGTTTTTATGAATTAAATTAATTCCAATTCGA
AGTCACCCATCATCGACTCTATTAAGATAACGTTTTTCTGATTATTTTTC
AAATAATGTCTCTACTTTTGTGTTTCTCAAATTAATATTTTTGTACAGAA
ATGATAATATTTTTGCTAAGAATTTAGTTTACGATTATGTTAATAATTAG
AAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031365XLOC_031365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049414-exon-scaffold_158-1575043694:48260..48338TCONS_00049414-exon-scaffold_158-1575043694:48260..48338Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:39313..40380TCONS_00049414-exon-scaffold_158-1575043694:39313..40380Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:39017..39118TCONS_00049414-exon-scaffold_158-1575043694:39017..39118Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:38600..38758TCONS_00049414-exon-scaffold_158-1575043694:38600..38758Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:38298..38482TCONS_00049414-exon-scaffold_158-1575043694:38298..38482Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:37730..37823TCONS_00049414-exon-scaffold_158-1575043694:37730..37823Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:35902..37023TCONS_00049414-exon-scaffold_158-1575043694:35902..37023Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1575043694:34334..34862TCONS_00049414-exon-scaffold_158-1575043694:34334..34862Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:48260..48338TCONS_00049414-exon-scaffold_158-1510915933:48260..48338Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:39313..40380TCONS_00049414-exon-scaffold_158-1510915933:39313..40380Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:39017..39118TCONS_00049414-exon-scaffold_158-1510915933:39017..39118Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:38600..38758TCONS_00049414-exon-scaffold_158-1510915933:38600..38758Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:38298..38482TCONS_00049414-exon-scaffold_158-1510915933:38298..38482Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:37730..37823TCONS_00049414-exon-scaffold_158-1510915933:37730..37823Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:35902..37023TCONS_00049414-exon-scaffold_158-1510915933:35902..37023Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1510915933:34334..34862TCONS_00049414-exon-scaffold_158-1510915933:34334..34862Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:48260..48338TCONS_00049414-exon-scaffold_158-1491911889:48260..48338Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:39313..40380TCONS_00049414-exon-scaffold_158-1491911889:39313..40380Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:39017..39118TCONS_00049414-exon-scaffold_158-1491911889:39017..39118Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:38600..38758TCONS_00049414-exon-scaffold_158-1491911889:38600..38758Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:38298..38482TCONS_00049414-exon-scaffold_158-1491911889:38298..38482Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:37730..37823TCONS_00049414-exon-scaffold_158-1491911889:37730..37823Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:35902..37023TCONS_00049414-exon-scaffold_158-1491911889:35902..37023Clytia hemisphaericaexon
TCONS_00049414-exon-scaffold_158-1491911889:34334..34862TCONS_00049414-exon-scaffold_158-1491911889:34334..34862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_158supercontigscaffold_158:34334..48338 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74266	8.02718	0.806126	1.26405	4.36351	0.0368857	0.0557785	6.24368	1.21741	2.76129	0.0408296	1.73831	0.00188174	3.13561	0.0106532	3.34471e-05	0.0248635	2.08594	0.0217997	0.0158978	1.10785	2.76987	1.66222	4.98801	0.0286504	0.0325103	6.25062	3.80011	5.04041	2.60907
Blast
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BLAST of TCONS_00049414 vs. Swiss-Prot (Human)
Match: UBP38 (Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo sapiens GN=USP38 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 1.959e-93
Identity = 244/776 (31.44%), Postives = 365/776 (47.04%), Query Frame = 2 
Query:  878 TTDGK-HPSICIAKLLKCLNLDELSLYINEVVKS-QLTDDTLTLMTCRLVDWICLPDPAIATDQWVMQVLKYLIQHKKYQVLSSVIDGKINQIFHLVYLPVFRRRSLSLMTFMLISYLHSPKPFHEIAVLIPDLVAQLKKEETPQATNDVVLLGELSFTLMYQYPGFPDIYEKLLASLQGVPKPSEEKMNTWLKSSFSISQE-ELPQVI--VPERLPNTKVGLDNLGNTCYANSVIQALFNLAHVRKVLLERETDMTLSTTKSIQELFGLLLLTKRSSIAPRVFLNLSRPPWFQSGFQQDCSEYLKYLLDKL-------------------------------------QTESSKDTSKD-INQLLSGQIRTSVECLNCGFVSSREEVFNDIPLSF----------NQEPLVA-----GG-----------EKVVHTLKGG----DSSDMKRKIGCKLSEASDAKQTM----TDDTISSLDTPFVDLTATETPPDPLQKFKIQEMMCSYLSPELLNNSNKYYCETCASLQNAQKTMNILKYPKYLILTMKRFTYDVKTQKRSKLLHVVDHPQTFDF----CNECARCHSQNRVDSD-----ESVAGSSSQNTTKNRECNSGNATHFRLLSVIVHSGQSSDSGHYYAYTC--------------------------------------EYLEDGNI--KWLLLNDSRVSSAPNDCVSKLSSRFPQDTPYVCIY-ECYXXXXXXXXXXXXXLVINT----QQKILDFVNADNMAYERE 2812
            +TD    PS+ +A L++ + L  +++ I  +     + D ++T   CR++DW+  P  A   D WV+ +LK L   +K+ +L  V   KI  +F+ ++ P+ R  +L++++ ML+S+ HSP+ FH I   + +LV   K +  P +T  +V L EL   +MY Y GFPD+YE +L +++  PKPSEEK+   L  S   SQ   L   +  +  +    K GL NLGNTCY NSVIQALF     R+ +L    +   S  K +Q LF  L  T+R + APR+F   SRPPWF    QQDCSEYL++LLD+L                                     +T  + D  K  I ++  G++RT + CLNC   S + E F D+ L+F           Q+P  +     GG           E VV+         DS   ++ IG   +E   ++ T     ++  + + D P       ET P       + +++  +L+PE+L   N+YYCE CASLQNA+KTM I + P+YLILT+ RF+YD K   R K+L  V  P   +         +       VD D     E++A     + T    C       + L SV+VHSG SS+SGHYY+Y                                        + LE+  +  +W L NDSRV+      V K++SRFP+DT YV +Y + +  N          L IN     Q++++D +  DN  Y +E
Sbjct:  226 STDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMIDWLSWP-LAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVLSHMLLSFQHSPEAFHLIVPHVVNLVHSFKNDGLPSSTAFLVQLTELIHCMMYHYSGFPDLYEPILEAIKDFPKPSEEKIKLILNQSAWTSQSNSLASCLSRLSGKSETGKTGLINLGNTCYMNSVIQALFMATDFRRQVLSLNLNGCNSLMKKLQHLFAFLAHTQREAYAPRIFFEASRPPWFTPRSQQDCSEYLRFLLDRLHEEEKILKVQASHKPSEILECSETSLQEVASKAAVLTETPRTSDGEKTLIEKMFGGKLRTHIRCLNCRSTSQKVEAFTDLSLAFCPSSSLENMSVQDPASSPSIQDGGLMQASVPGPSEEPVVYNPTTAAFICDSLVNEKTIGSPPNEFYCSENTSVPNESNKILVNKDVP--QKPGGETTPS------VTDLLNYFLAPEILTGDNQYYCENCASLQNAEKTMQITEEPEYLILTLLRFSYDQKYHVRRKILDNVSLPLVLELPVKRITSFSSLSESWSVDVDFTDLSENLAKKLKPSGTDEASCT--KLVPYLLSSVVVHSGISSESGHYYSYARNITSTDSSYQMYHQSEALALASSQSHLLGRDSPSAVFEQDLENKEMSKEWFLFNDSRVTFTSFQSVQKITSRFPKDTAYVLLYKKQHSTNGLSGNNPTSGLWINGDPPLQKELMDAITKDNKLYLQE 990
The following BLAST results are available for this feature:
BLAST of TCONS_00049414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP381.959e-9331.44Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo s... [more]
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