TCONS_00049418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049418
Unique NameTCONS_00049418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=transcript|length=950bp
TGATTTATCATAAACGTGaagatgtttatatacttcaACCATATCGCCAA
TTTTACGTCTGATTTTCAGTGTCGGAAGGTTAATCTTACGGAGACGGTAT
TTGTAAGATTTGTTCTTGCACCCTCTAACCAGTCTCGTGGCCCTTCGCTG
AACACTCTCGATGACATAGATGTGTTTGATGAGTCGTGGAGACCAAACGG
CTTCAGCGTACTCAAGATGAATCAGACAAACGCTATAAAAAGAGTGCAGA
GTATTTCTGGTGaaagaaagtcaaaactttTGCTGATCAGACCAACGATT
GAGttagttttcttgattttaccaaaGATGTGTTCTTCAAAATTCAGTTC
CCCGACGATAATCACTCCGTGATCTTTTTCTTGATCCAGGTGCTCCAGGA
TTAACTCGTCTATGTTGTATTGATGGGCAtgtttgatgttccaaaatttt
cccagtGTTAGCACGTGGCATTTATCTGGGTGGAATCTGAGTAGTCAGTC
CTATGACCATCTTTCCATATTCAGCACTAATTATCTCCTCAACAAGCTTA
GTGTCGTCTGCAAAGAGGTACATATCAGAGCTTGTAACCTCAGGTAGATC
GTTGATATATAACACAAAAAGTAATAGACCAAGAACACTTCCCTGTGGGA
CACCGCTGAGTACTTTACCTTCCTTGGATAGTTTACCATTTACCTTAATA
TACTGATAACGATCCGACAGAAAGGATTTGATCCAGTCTAACGTGTATCC
TTTGATACCGTATGCGTCGAGTTTCTTGATAATGATGAGTAATCTGCGGT
GTGAAACTGTATCGAAGGCCTTGGCAAAGTCGAAATAGATATCCTACGAA
ATAGATAACATTCTAACGTCCTACAAGGACTACAACATTTCAATTTAGAA
AAGCGACCATAAGCCCCGCAATCCTATTTTGAACACTAAACTTATTTCTG
Run BLAST on NCBI

protein sequence of TCONS_00049418-protein

>TCONS_00049418-protein ID=TCONS_00049418-protein|Name=TCONS_00049418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MFIYFNHIANFTSDFQCRKVNLTETVFVRFVLAPSNQSRGPSLNTLDDID
VFDESWRPNGFSVLKMNQTNAIKRVQSISGERKSKLLLIRPTIELVFLIL
PKMCSSKFSSPTIITP
Run BLAST on NCBI

transcript from alignment at scaffold_158:75882..76831

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at scaffold_158:75882..76831 (Clytia hemisphaerica)
CAGAAATAAGTTTAGTGTTCAAAATAGGATTGCGGGGCTTATGGTCGCTT
TTCTAAATTGAAATGTTGTAGTCCTTGTAGGACGTTAGAATGTTATCTAT
TTCGTAGGATATCTATTTCGACTTTGCCAAGGCCTTCGATACAGTTTCAC
ACCGCAGATTACTCATCATTATCAAGAAACTCGACGCATACGGTATCAAA
GGATACACGTTAGACTGGATCAAATCCTTTCTGTCGGATCGTTATCAGTA
TATTAAGGTAAATGGTAAACTATCCAAGGAAGGTAAAGTACTCAGCGGTG
TCCCACAGGGAAGTGTTCTTGGTCTATTACTTTTTGTGTTATATATCAAC
GATCTACCTGAGGTTACAAGCTCTGATATGTACCTCTTTGCAGACGACAC
TAAGCTTGTTGAGGAGATAATTAGTGCTGAATATGGAAAGATGGTCATAG
GACTGACTACTCAGATTCCACCCAGATAAATGCCACGTGCTAACactggg
aaaattttggaacatcaaacaTGCCCATCAATACAACATAGACGAGTTAA
TCCTGGAGCACCTGGATCAAGAAAAAGATCACGGAGTGATTATCGTCGGG
GAACTGAATTTTGAAGAACACATCtttggtaaaatcaagaaaactaaCTC
AATCGTTGGTCTGATCAGCAaaagttttgactttctttCACCAGAAATAC
TCTGCACTCTTTTTATAGCGTTTGTCTGATTCATCTTGAGTACGCTGAAG
CCGTTTGGTCTCCACGACTCATCAAACACATCTATGTCATCGAGAGTGTT
CAGCGAAGGGCCACGAGACTGGTTAGAGGGTGCAAGAACAAATCTTACAA
ATACCGTCTCCGTAAGATTAACCTTCCGACACTGAAAATCAGACGTAAAA
TTGGCGATATGGTtgaagtatataaacatcttCACGTTTATGATAAATCA

Coding sequence (CDS) from alignment at scaffold_158:75882..76831

>TCONS_00049418 ID=TCONS_00049418|Name=TCONS_00049418|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_158:75882..76831 (Clytia hemisphaerica)
TCACGGAGTGATTATCGTCGGGGAACTGAATTTTGAAGAACACATCtttg
gtaaaatcaagaaaactaaCTCAATCGTTGGTCTGATCAGCAaaagtttt
gactttctttCACCAGAAATACTCTGCACTCTTTTTATAGCGTTTGTCTG
ATTCATCTTGAGTACGCTGAAGCCGTTTGGTCTCCACGACTCATCAAACA
CATCTATGTCATCGAGAGTGTTCAGCGAAGGGCCACGAGACTGGTTAGAG
GGTGCAAGAACAAATCTTACAAATACCGTCTCCGTAAGATTAACCTTCCG
ACACTGAAAATCAGACGTAAAATTGGCGATATGGTtgaagtatataaaca
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031369XLOC_031369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049418-proteinTCONS_00049418-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049418-exon-scaffold_158-1491911889:75882..76831TCONS_00049418-exon-scaffold_158-1491911889:75882..76831Clytia hemisphaericaexon
TCONS_00049418-exon-scaffold_158-1510915933:75882..76831TCONS_00049418-exon-scaffold_158-1510915933:75882..76831Clytia hemisphaericaexon
TCONS_00049418-exon-scaffold_158-1575043694:75882..76831TCONS_00049418-exon-scaffold_158-1575043694:75882..76831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_158supercontigscaffold_158:75882..76831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225265	0.619175	0.440087	1.02366	0.877781	0.26635	0.128635	1.02396	0.285439	0.560315	0.274122	0.778602	1.20172	2.70326	0.475554	0.578205	0.327713	0.187844	0.174269	0.545662	0.353792	0.60053	0.164909	0.604882	1.06717	1.34569	0.815805	0.428788	0.409597	0.450861
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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