TCONS_00049420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049420
Unique NameTCONS_00049420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049420 ID=TCONS_00049420|Name=TCONS_00049420|organism=Clytia hemisphaerica|type=transcript|length=293bp
CGGAAACCTTCATTCCGAGTATATCTatgctattctgtaatgcggaaact
cTCATCTTACGTGTTCCTatgctattctgtaatgcgNGTTGGATGAATTG
GAAGTTGCCTTCTTTAGAAGTGGGAGTTTTAATGACATATCCATAAAATG
AAATGGACTTATATGGATTGAATAATAAAGTATTATAGGATTATAATCTG
TATATACCTACAACTGAACTTGGCTTTACTTTTTATGTCCTTGTATAACT
TTGTGTGCGTAACCTGATGCCTTACCCAAGTGACAGTACAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_158:86478..86770

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049420 ID=TCONS_00049420|Name=TCONS_00049420|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_158:86478..86770 (Clytia hemisphaerica)
ATTTGTACTGTCACTTGGGTAAGGCATCAGGTTACGCACACAAAGTTATA
CAAGGACATAAAAAGTAAAGCCAAGTTCAGTTGTAGGTATATACAGATTA
TAATCCTATAATACTTTATTATTCAATCCATATAAGTCCATTTCATTTTA
TGGATATGTCATTAAAACTCCCACTTCTAAAGAAGGCAACTTCCAATTCA
TCCAACNcgcattacagaatagcatAGGAACACGTAAGATGAgagtttcc
gcattacagaatagcatAGATATACTCGGAATGAAGGTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031371XLOC_031371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049420-exon-scaffold_158-1491911889:86478..86770TCONS_00049420-exon-scaffold_158-1491911889:86478..86770Clytia hemisphaericaexon
TCONS_00049420-exon-scaffold_158-1510915933:86478..86770TCONS_00049420-exon-scaffold_158-1510915933:86478..86770Clytia hemisphaericaexon
TCONS_00049420-exon-scaffold_158-1575043694:86478..86770TCONS_00049420-exon-scaffold_158-1575043694:86478..86770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_158supercontigscaffold_158:86478..86770 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.474371	1.18414	2.22751	3.63651	3.01744	12.2247	9.90631	0.850656	1.92518	5.53612	3.2827	1.93107	3.51281	1.04129	0.559943	3.00658	2.37851	1.47324	5.8935	0.50593	0	0.649602	2.40609	5.18644	3.96829	6.40252	5.62631	0	0.618611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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