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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049423 ID=TCONS_00049423|Name=TCONS_00049423|organism=Clytia hemisphaerica|type=transcript|length=1320bp
TTCCCCGGGGACTTTTATGTGTGGGATTTAATAAAGGTTATTATTAACGC
CTATGCacaaaatagtttgatcaaagGTAATATAAAGTTCCGATTCTTGA
TACATTGATCAAATTCAAGTATTAATCGTTACAGACGGGTTACAGTATTG
GAAAATCTCAACTTGAAAAAACtgctggtttgttttgataaaaggTTATA
ACTATGTTGGGCCTTGCCCGAATTTCactattttttgcttgtttGGCATC
TATTAATGGTGCACCAAAACAACATAAACGTCATTTTCATCAGCACCATG
AGAATTCAAAACGACATTTCCATCAGCATAAAGACTCAAAACTGGTGAAT
GATCCTTTAACTGGCCCTTCTTGCGATACATTTGTAACTTTGGGCCATGG
ATGGAGCCAGGGCCAACAAGCTAAAATGGAATTCACTGTCCCTCAAGCTG
TTAATGGATGGAAAATCACGGTGGAATTTTCACGCAGTCCAATCAGGAAC
TTTCAGCTGCAGAATACAAAGCAAGCAGGAAATTATCGTAAATGCAGATT
CACATTCACAAACTACCAGTGGAACTCAAAGATAAACGCCGGTCAAAAAA
TTACATATCATTTCCTGTATGGCTTCTCTGGAAATCCAAAACCGAAAATC
GCTTACGTTAAATTCGAAAGTGATTCGTTTTCAATGACCTGTGGAGCGCC
TGCTTGTCCAGTTCCAACGCCACCGCCTACTTTAGCTCCGGGCGTCACCA
CCCCTATTAAAACAACGACACCCAGACCAACCCTTCCGCCACTACAGGGT
GCTTGctcaaattttattaaaatcaaaCGAAGCAATCCTGGTAGTGAGTT
TGGTGTGATCAGGTTTTCTCTTCCAACTTCTATCGCAACTTGGACGTTGA
AGGTTGGATTCTCAGAGACAGTTCAAAACTTCCAAGTCCAACGTGGTGCT
AACATGTTGAGAGTTGAAAGACCATGCTCAGAAGTCACATTATACAACTA
CGtcaaagctggcaacagacctGATAACGCTGGCAAACCTATGCGCTTCC
CATACGTTTTACATTATAACCAGAACACTGCCAAACCAATCATTACTTAT
TTTGAGATCAGTGATGGATCAAATACATACATGTGTGGGACTCAACCTTC
ATGTCCCACTACTACAACGACCACAATTACAACGACCACTGGACCTTCAA
CGACTGAAGGAGAATCTACTACTGCTgtatgtttctttttatttatttct
tgcagactcattcaaaatctttttgttgCTTTCTAATCTTAAAATTACTT
TAGAGAAAGTTTATGTTAAT Run BLAST on NCBI protein sequence of TCONS_00049423-protein >TCONS_00049423-protein ID=TCONS_00049423-protein|Name=TCONS_00049423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MLGLARISLFFACLASINGAPKQHKRHFHQHHENSKRHFHQHKDSKLVND
PLTGPSCDTFVTLGHGWSQGQQAKMEFTVPQAVNGWKITVEFSRSPIRNF
QLQNTKQAGNYRKCRFTFTNYQWNSKINAGQKITYHFLYGFSGNPKPKIA
YVKFESDSFSMTCGAPACPVPTPPPTLAPGVTTPIKTTTPRPTLPPLQGA
CSNFIKIKRSNPGSEFGVIRFSLPTSIATWTLKVGFSETVQNFQVQRGAN
MLRVERPCSEVTLYNYVKAGNRPDNAGKPMRFPYVLHYNQNTAKPIITYF
EISDGSNTYMCGTQPSCPTTTTTTITTTTGPSTTEGESTTAVCFFLFISC
RLIQNLFVAF Run BLAST on NCBI transcript from alignment at scaffold_159:40514..42458+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049423 ID=TCONS_00049423|Name=TCONS_00049423|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at scaffold_159:40514..42458+ (Clytia hemisphaerica)
TTCCCCGGGGACTTTTATGTGTGGGATTTAATAAAGGTTATTATTAACGC
CTATGCacaaaatagtttgatcaaagGTAATATAAAGTTCCGATTCTTGA
TACATTGATCAAATTCAAGTATTAATCGTTACAGACGGGTTACAGTATTG
GAAAATCTCAACTTGAAAAAACtgctggtttgttttgataaaaggTTATA
ACTATGTTGGGCCTTGCCCGAATTTCactattttttgcttgtttGGCATC
TATTAATGGTGCACCAAAACAACATAAACGTCATTTTCATCAGCACCATG
AGAATTCAAAACGACATTTCCATCAGCATAAAGACTCAAAACTGGTGAAT
GATCCTTTAACTGGCCCTTCTTGCGATACATTTGTAACTTTGGGCCATGG
ATGGAGCCAGGGCCAACAAGCTAAAATGGAATTCACTGTCCCTCAAGCTG
TTAATGGATGGAAAATCACGgtaaaattttacaaatgaatTCACTTTTAG
ATTTATTCAAGTACTTATGTTGTAGAATATTAGTGAGCGATTATTTTTAG
ATCGTGCTCTGCGCATTTTTAAGAAACCTATACCACCATAAAGGCATGAC
TTCTGAAGAATTAAGATTGTGGTATATTCTAGAAGGCTTTCTTGGGATTG
TGTTTCCTCAGATACGTATGTGACTTTGTGAAGTTAAACTTATTTTATTG
CTTTGCTGATTTTCACAGGTGGAATTTTCACGCAGTCCAATCAGGAACTT
TCAGCTGCAGAATACAAAGCAAGCAGGAAATTATCGTAAATGCAGATTCA
CATTCACAAACTACCAGTGGAACTCAAAGATAAACGCCGGTCAAAAAATT
ACATATCATTTCCTGTATGGCTTCTCTGGAAATCCAAAACCGAAAATCGC
TTACGTTAAATTCGAAAGTGATTCGTTTTCAATGACCTGTGGAGCGCCTG
CTTGTCCAGTTCCAACGCCACCGCCTACTTTAGCTCCGGGCGTCACCACC
CCTATTAAAACAACGACACCCAGACCAACCCTTCCGCCACTACAGGGTGC
TTGctcaaattttattaaaatcaaaCGAAGCAATCCTGGTAGTGAGTTTG
GTGTGATCAGGTTTTCTCTTCCAACTTCTATCGCAACTTGGACGTTGAAG
GTATGACTCCTATAATTTTTCTTACATTATCTCTTTTCTGTGAATTCATT
TCTAGGTATTCTAAATAGAAAAGGGAGTTTGAACTGAATAAGTTTTGCAT
GAGTTTAAAGGAGAAATTCTACCCCCAAAATAATGTCTAAAGTTgtaaga
atttaatttttctggcTAAAAAGTTTGTCGATTGCAAAATATTCCAAACA
ATTCTGTATGGAACTAAAAATCTATACTCTTTATTTGCAACAGAATGAAG
ATTTTAttgtataaaaatttatttattcctATACGTTTGTCAGTGGATAT
TGGATTCAAATCTTATTCAGTAATTATGTTGCAAAATTTTTCCTTTCGGT
GTTATTATCTCTGTTTTATCACTTTAGGTTGGATTCTCAGAGACAGTTCA
AAACTTCCAAGTCCAACGTGGTGCTAACATGTTGAGAGTTGAAAGACCAT
GCTCAGAAGTCACATTATACAACTACGtcaaagctggcaacagacctGAT
AACGCTGGCAAACCTATGCGCTTCCCATACGTTTTACATTATAACCAGAA
CACTGCCAAACCAATCATTACTTATTTTGAGATCAGTGATGGATCAAATA
CATACATGTGTGGGACTCAACCTTCATGTCCCACTACTACAACGACCACA
ATTACAACGACCACTGGACCTTCAACGACTGAAGGAGAATCTACTACTGC
Tgtatgtttctttttatttatttcttgcagactcattcaaaatctttttg
ttgCTTTCTAATCTTAAAATTACTTTAGAGAAAGTTTATGTTAAT Coding sequence (CDS) from alignment at scaffold_159:40514..42458+ >TCONS_00049423 ID=TCONS_00049423|Name=TCONS_00049423|organism=Clytia hemisphaerica|type=CDS|length=3249bp|location=Sequence derived from alignment at scaffold_159:40514..42458+ (Clytia hemisphaerica)
ATGTTGGGCCTTGCCCGAATTTCactattttttgcttgtttGGCATCTAT
TAATGGTGCACCAAAACAACATAAACGTCATTTTCATCAGCACCATGAGA
ATTCAAAACGACATTTCCATCAGCATAAAGACTCAAAACTGGTGAATGAT
CCTTTAACTGGCCCTTCTTGCGATACATTTGTAACTTTGGGCCATGGATG
GAGCCAGGGCCAACAAGCTAAAATGGAATTCACTGTCCCTCAAGCTGTTA
ATGGATGGAAAATCACGGTGGAATTTTCACGCAGTCCAATCAGGAACTTT
CAGCTGCAGAATACAAAGCAAGCAGGAAATTATCGTAAATGCAGATTCAC
ATTCACAAACTACCAGTGGAACTCAAAGATAAACGCCGGTCAAAAAATTA
CATATCATTTCCTGTATGGCTTCTCTGGAAATCCAAAACCGAAAATCGCT
TACGTTAAATTCGAAAGTGATTCGTTTTCAATGACCTGTGGAGCGCCTGC
TTGTCCAGTTCCAACGCCACCGCCTACTTTAGCTCCGGGCGTCACCACCC
CTATTAAAACAACGACACCCAGACCAACCCTTCCGCCACTACAGGGTGCT
TGctcaaattttattaaaatcaaaCGAAGCAATCCTGGTAGTGAGTTTGG
TGTGATCAGGTTTTCTCTTCCAACTTCTATCGCAACTTGGACGTTGAAGG
TTGGATTCTCAGAGACAGTTCAAAACTTCCAAGTCCAACGTGGTGCTAAC
ATGTTGAGAGTTGAAAGACCATGCTCAGAAGTCACATTATACAACTACGt
caaagctggcaacagacctGATAACGCTGGCAAACCTATGCGCTTCCCAT
ACGTTTTACATTATAACCAGAACACTGCCAAACCAATCATTACTTATTTT
GAGATCAGTGATGGATCAAATACATACATGTGTGGGACTCAACCTTCATG
TCCCACTACTACAACGACCACAATTACAACGACCACTGGACCTTCAACGA
CTGAAGGAGAATCTACTACTGCTgtatgtttctttttatttatttcttgc
agactcattcaaaatctttttgttgCTTTCTAAATGTTGGGCCTTGCCCG
AATTTCactattttttgcttgtttGGCATCTATTAATGGTGCACCAAAAC
AACATAAACGTCATTTTCATCAGCACCATGAGAATTCAAAACGACATTTC
CATCAGCATAAAGACTCAAAACTGGTGAATGATCCTTTAACTGGCCCTTC
TTGCGATACATTTGTAACTTTGGGCCATGGATGGAGCCAGGGCCAACAAG
CTAAAATGGAATTCACTGTCCCTCAAGCTGTTAATGGATGGAAAATCACG
GTGGAATTTTCACGCAGTCCAATCAGGAACTTTCAGCTGCAGAATACAAA
GCAAGCAGGAAATTATCGTAAATGCAGATTCACATTCACAAACTACCAGT
GGAACTCAAAGATAAACGCCGGTCAAAAAATTACATATCATTTCCTGTAT
GGCTTCTCTGGAAATCCAAAACCGAAAATCGCTTACGTTAAATTCGAAAG
TGATTCGTTTTCAATGACCTGTGGAGCGCCTGCTTGTCCAGTTCCAACGC
CACCGCCTACTTTAGCTCCGGGCGTCACCACCCCTATTAAAACAACGACA
CCCAGACCAACCCTTCCGCCACTACAGGGTGCTTGctcaaattttattaa
aatcaaaCGAAGCAATCCTGGTAGTGAGTTTGGTGTGATCAGGTTTTCTC
TTCCAACTTCTATCGCAACTTGGACGTTGAAGGTTGGATTCTCAGAGACA
GTTCAAAACTTCCAAGTCCAACGTGGTGCTAACATGTTGAGAGTTGAAAG
ACCATGCTCAGAAGTCACATTATACAACTACGtcaaagctggcaacagac
ctGATAACGCTGGCAAACCTATGCGCTTCCCATACGTTTTACATTATAAC
CAGAACACTGCCAAACCAATCATTACTTATTTTGAGATCAGTGATGGATC
AAATACATACATGTGTGGGACTCAACCTTCATGTCCCACTACTACAACGA
CCACAATTACAACGACCACTGGACCTTCAACGACTGAAGGAGAATCTACT
ACTGCTgtatgtttctttttatttatttcttgcagactcattcaaaatct
ttttgttgCTTTCTAAATGTTGGGCCTTGCCCGAATTTCactattttttg
cttgtttGGCATCTATTAATGGTGCACCAAAACAACATAAACGTCATTTT
CATCAGCACCATGAGAATTCAAAACGACATTTCCATCAGCATAAAGACTC
AAAACTGGTGAATGATCCTTTAACTGGCCCTTCTTGCGATACATTTGTAA
CTTTGGGCCATGGATGGAGCCAGGGCCAACAAGCTAAAATGGAATTCACT
GTCCCTCAAGCTGTTAATGGATGGAAAATCACGGTGGAATTTTCACGCAG
TCCAATCAGGAACTTTCAGCTGCAGAATACAAAGCAAGCAGGAAATTATC
GTAAATGCAGATTCACATTCACAAACTACCAGTGGAACTCAAAGATAAAC
GCCGGTCAAAAAATTACATATCATTTCCTGTATGGCTTCTCTGGAAATCC
AAAACCGAAAATCGCTTACGTTAAATTCGAAAGTGATTCGTTTTCAATGA
CCTGTGGAGCGCCTGCTTGTCCAGTTCCAACGCCACCGCCTACTTTAGCT
CCGGGCGTCACCACCCCTATTAAAACAACGACACCCAGACCAACCCTTCC
GCCACTACAGGGTGCTTGctcaaattttattaaaatcaaaCGAAGCAATC
CTGGTAGTGAGTTTGGTGTGATCAGGTTTTCTCTTCCAACTTCTATCGCA
ACTTGGACGTTGAAGGTTGGATTCTCAGAGACAGTTCAAAACTTCCAAGT
CCAACGTGGTGCTAACATGTTGAGAGTTGAAAGACCATGCTCAGAAGTCA
CATTATACAACTACGtcaaagctggcaacagacctGATAACGCTGGCAAA
CCTATGCGCTTCCCATACGTTTTACATTATAACCAGAACACTGCCAAACC
AATCATTACTTATTTTGAGATCAGTGATGGATCAAATACATACATGTGTG
GGACTCAACCTTCATGTCCCACTACTACAACGACCACAATTACAACGACC
ACTGGACCTTCAACGACTGAAGGAGAATCTACTACTGCTgtatgtttctt
tttatttatttcttgcagactcattcaaaatctttttgttgCTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049423-exon-scaffold_159-1491911889:40514..40983 | TCONS_00049423-exon-scaffold_159-1491911889:40514..40983 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1510915933:40514..40983 | TCONS_00049423-exon-scaffold_159-1510915933:40514..40983 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1575043694:40514..40983 | TCONS_00049423-exon-scaffold_159-1575043694:40514..40983 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1491911889:41232..41663 | TCONS_00049423-exon-scaffold_159-1491911889:41232..41663 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1510915933:41232..41663 | TCONS_00049423-exon-scaffold_159-1510915933:41232..41663 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1575043694:41232..41663 | TCONS_00049423-exon-scaffold_159-1575043694:41232..41663 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1491911889:42041..42458 | TCONS_00049423-exon-scaffold_159-1491911889:42041..42458 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1510915933:42041..42458 | TCONS_00049423-exon-scaffold_159-1510915933:42041..42458 | Clytia hemisphaerica | exon |
| TCONS_00049423-exon-scaffold_159-1575043694:42041..42458 | TCONS_00049423-exon-scaffold_159-1575043694:42041..42458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_159 | supercontig | scaffold_159:40514..42458 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008965 | Carb-bd_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
Blast
The following BLAST results are available for this feature:
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