TCONS_00049431 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049431
Unique Name	TCONS_00049431
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2153

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_159:127640..135185+

transcript sequence

>TCONS_00049431 ID=TCONS_00049431|Name=TCONS_00049431|organism=Clytia hemisphaerica|type=transcript|length=2153bp
GTTCAAGAATACATTGACATTTCAACAAAATGTAGGAGTTGGTATGAATG
GTAATGATTTATTTTACTTACGAGAATTTGATGATGACAGCCTGCTTGTA
GTCGTCGTAACCATCGTAGATTTGTTTGATCTGAAAAAAAGATCctttta
ctttacttttttgaaaaaggagaCACTATGTGCTTGTTCAAACTTTCGTT
TTTGGCTCCGGAAGCTGTAAACTTGTATGGCCATGCGTGGAAGGTTATCT
TATTGCTTACATCaacaaaaaatcagttttagTTTGTTAGTTTGTCGATT
GGATGTGTCACTCACCTTTCATGGTTCTGGTGTTATTATCAGAGCCTTCG
ACTGTTGGTTCATCAACTCCCGCTGTTGGTGGCTCCGCTGTTGTTGCTAT
GGAAACAAACATGAGAGCGTACCAGAGAACGTGTTGAAGAAATTGCAAGG
TGGTGACTTGGAGACACTGTTTCACAAATTGAAGATTGAAGAACCACGGC
AAAGAGGATTTGACGCCATTCTGTTTCCCAACCAGCCATGTCTTCCACGA
AAAACGGTCATTGAAGTCCCTCAACCGAGCAGCGTGAGCAAGATCCATTT
CCCTTACTATGTGGAAGTGCACCGATGTGCTGGTGGATGTGGCCCTATGC
AATTCCTTTCCAGATGCCAACCTAAAGAGACAAAGAAGGTTCGTGCTAAA
GTCATTGCTTTAACCTGGACCTCGGGAAACCCAGAAGATGAAATTCCACC
GGCATTGGCTTACGTTGCCATCACCAACCATACATCATGTGAATGTGGAT
GCAAACATGAAGGGAATGAATGCAATCGTTTCCAGTTCTGGGATACAGCT
CGTTGTCGGTGCAATTGTATGAGCTGGGGATGCCCAAAAAACTTCGAGAA
AGACCCGAATAATTGCTGTGCTTGTCCCATTCGAGAACGTTTTTGTCCTG
CCCGTAAACAGGAATGGATTCAGTCTCGCTGCGCTTGCGTGTGTAAAAAT
CTTCACAAGAAATGTCGTTTCCCGTCGAAGATTCGGGACCCCAATACGTG
CAAATGTGTTTGCCCACCCATTATTTGTCGCTCTGGCAGCAAGTTGGACA
GCAAAACATGCCATTGTCAACCCGATAATTCATAACCTTGTGGTGGTATA
CTCGAAAAGATTAATTTCCTCAAATAGCCAAATACGTTTTTCTGCGCCAA
TTTTTTAATAGCGAGATTTGATTTAAATGTTCTTTTCTCGTTGGTGATTT
TTATTCAAACTCAAGTTTTGTGGCACCATCCCTCAAATAtaagaaatttt
gtattttcttcgaGAACCtcagacttttttgttttcatatcgAAGGTTTC
TATATTCTATAAAgtgtgtccaaaaaaaaatcagaaccAATTTTACATGA
AATTAAATCCTCAAAACTGGTTATTCCAAGCttgttaaaatttatttttg
attttgattgataaGGTTATATGGCTACATAGAacacttactctcgggta
cctaatagccgtcccccccccgctaattaatttttcaaaaattttccacc
caggacattcttattccaaccccccgcttataaatttttgggaaaatgtt
tttgaaagttcccttttttgtcttaattctgctgtattagcctccctttc
aaacattttccacccaggacatttttattccaacccccccgcttattaaa
ttttgagattttttccaacccccccggctattaggtacccaagagtaatA
TTATTAAGTTGTGCTCATAGTATAGTGAAAAAGTGCCCACAATGTATTGC
CAACTCAAGAggattcctttttataatagagtatgTGTTGTTAACTTCGT
ACCTTAccgtccgcaaaccatattgttcACATATTGTGTTGTTTAAGCAG
TCCTTATAAAGGTTATATTTAAATTCTGCTCCGTTTTTTTTCGCGGACAC
ACTGTGTTTAGCTAGAAGACCTTCCGTGTATTAGAtaattttattataaa
aaaaccaaagtaattctttgtttttatgtatttttattttattttagctG
TTTGTTATGAAACACCACAGGAAATGTAATTTTCAAGTAATTTTCATCTG
AGAGCAATCTTAAGAACAAAGATATACATTAATCCAGTAGTAATAAAACC
CGA

Run BLAST on NCBI

transcript from alignment at scaffold_159:127640..135185+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049431 ID=TCONS_00049431|Name=TCONS_00049431|organism=Clytia hemisphaerica|type=transcript|length=7546bp|location=Sequence derived from alignment at scaffold_159:127640..135185+ (Clytia hemisphaerica)
GTTCAAGAATACATTGACATTTCAACAAAATGTAGGAGTTGGTATGAATG
GTAATGATTTATTTTACTTACGAGAATTTGATGATGACAGCCTGCTTGTA
GTCGTCGTAACCATCGTAGATTTGTTTGATCTGAAAAAAAGATCctttta
ctttacttttttgaaaaaggagaCACTATGTGCTTGTTCAAACTTTCGTT
TTTGGCTCCGGAAGCTGTAAACTTGTATGGCCATGCGTGGAAGGTTATCT
TATTGCTTACATCaacaaaaaatcagttttagGTGGGTTATTATAGGGAT
AATTGACTTTGCTTTTTCGAATAGACCATACTCACATCAGAGAGGTATTT
GTGTCTGTTGATATCGTGCATGTTGTTTTTCATTTCGTCATAATAATCAA
CACTCTTGTCCAAAATAGCAACGTGGAAAGTAGTTCCTACAATAACAAAT
GCGTATTATTTACAAAAAACATCTATGCATGAATTCATAACATAGGAATA
CAAGAGACAAATAAATGAGATCTTCACTTATTAATTAATTTCTAGTATTG
TGATACCCCATAGATATCGGTTTAGCTTGCACTATCTCTCATGTTTCATT
TCCAGTTTGTTAGTTTGTCGATTGGATGTGTCACTCACCTTTCATGGTTC
TGGTGTTATTATCAGAGCCTTCGACTGTTGGTTCATCAACTCCCGCTGTT
GGTGGCTCCGCTGTTGTTGCTATGGAAACAAACATGAGGTAAAGTTAGTT
TTCATCGACCTATGCGTTATGAACcttcattttctattttgccCTAAGAA
ATGGGCTTTTCTGTTGACTTAGATTGTCAGGATGTTGAAAAGGGCTTTAC
ATTATGCCCTGTGCACAAGAGTGGCTAATAGGCTAGTAGGCTTTCAGGTA
TTGAACATTAAGGCTCGGCACAGCCCCagtttctttaattttctaatata
ttttctaaaataagATAAAAGATTACTCACTAGTAGTAGTAGGAGGAGCC
ATTGTTGTTGTGGTGGTGgtagtggtggtggtggtggtggtggtggtagt
GGTTGCGTCAGTACCATCCGCCCGCTTTTCAGCTTCTACTGTCTCTGGTG
ATTGTGCAGGATCGGTGATAGGGCTGTCGGAGAGGGCGGCAGATTCATCA
GCCGGTTTGACCGCTGAATCTGTATTCTCTACTGTGTCTTTCTTCTCATC
AACTATGAAGATATTGCAAAATGAAATGTAACTCTTTTCCAGCAAATTGA
TAAGATACCTTTTGCGTTCTTTCCTGGATTCTAAAAATACTTTGATCTAA
GAAGACTTGTTCATCAGTTCTTTCCTTTGAtgatatcaaaaaactttctt
gATGATATTGGAATGTTGTCCTGTTAACAAATGACACTAACCTGGAGCCG
GAGCAGGGTCCTCGTCGACCGGTTTGCAGTGTGCCAGTGCAAAGAGCACC
ACAAGTAAACTCAAAGTTCTAAACAACTTCATGATTGAcaccttgaaaaa
aaaaactcttcaGTCAAAAATGGTTGTCAGTGTGACAAATTTTCTAGTTA
AAATATGTAccaataaaaattttccactcaCCAAATTTCTACATCAANGT
GACAAATTTTCTAGTTAAAATATGTaccaataaaaatttttcactCACCA
AATTTCTACATCAATCAAGAAGatatattttgaacttttgaagaatttac
aAGACGCTTTGTTGCTAATTTGGTTGTTTGAGTGTTGGCTATGCATGAGT
GAACTGATAATATGCTGTATGAATAATCAACTCATTGTTTTCACTGCTAG
ACACAATTTAAAACATGCTGAAAATGTGCAGATGTTATTTGTGTTTGAAG
TTTCTTGCAACAggaacaaaacaacaaaacttcATTCAATGATCAGGCTC
CTTTGCCATTTACCACACCGTTTGTTGTTTCTGCCAAAACGAAGAAACAT
ACACACTTCATAATATTTTACTATAAACCCTATTCTAACCAAGGTTTTAA
TCTTTTTGACGAAACCGTATTCGCATAAGTATTTGCCGACATTTGATTTG
AAACATCAAAACGAGTTACAGCGAGTTTGTCCACCTCTCAGTAAAAGCCC
TAATATACGTCTacttcataagaacaaactatataagaacataaggcttc
aaatGTCAAAACATTAAGAACGAGTTTGTCCACCTCTCAGTAAAAGCCCT
AATATACGTCTacttcataagaacaaactatataagaacataaggcttca
aatGTCTAaacattaagaacaagttaagaacactttaagattTTGTGGAC
ACTAAAACACgcaattcaaaaaatttgaatgttcttataaaaaaatgtgt
atagcAGAAAAAAATCTCGTAGCagcttggtcaattttggagtgTTTGAA
TTAGCCCTATCCCAACTCCCGTACGACTTTCCACTTTTTTGTATTTGCAG
AAGGATGGCTCATAAGTTTAGTCCTATGACATTGAGACTTTTTGTGATCA
AGTCTTTGGATAAGTGTAGAGATAACTTCTTGGAAAGCTTGACACGAATG
AATGCTATCCAATACACCTTAAAAATTGGCTTCTTTAGGAACGAACTTCT
TTTTGACTTACCCTCAACCTCCCTGTTTCAATGCCCAGGTGGAACTTTCC
CCCCgtgggatgaaaatttctattgaaatcccaatgagcATGTAAATTGT
TTCCGGATAAAAAACGGCAGTGGGATCGTTATGGAAGTGCACTTTTTCCA
TTGAATATTAAATGAGGATGAGATCTAAGTCATTCAGTGAGGTTGAAATT
GTtggataccttatcggccctttttactcCGGCCCTTATAAgcgttattt
ttaggctcttggcgtaataagggccggtgttaaaagggtcggtgtaaaaa
gggcaaaaattttgcaaattttacttaaCAGTGGCgttaatctttaaaat
ttttggacctaccccggtggggtagaggtcctataaattaaccgatgtcc
gtctgtccgttcgttcgtccgttcgttcgtccgttcgtccgtctgttacc
agcttttctcaggattggctcattagttttttctgatttttggcacaatg
atgcaaaatggcaatgcccaaaatgtgacggagcccgattttagaaaaaa
attttctccggccgaaaatgccggaaatatgccggaaaaactgttttttt
tgcattttctcgagattttatcattagttttttctgattttttgctcaaa
gatgcgtattaacaatgcccaaaacatggccgagtccgatttttgagaaa
aaattttttccggcttaaaatgccggaaacatgccggaaatcgccgtttt
tgcagattttcattggcctttttccttataactgattgttttttcattca
aaaacattattaatagcaatgcccaccatcaagcatgttttaattttcaa
taaaattgattttgaagccggaactatttaaaaatcgccNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCTAAGTGTGGCC
Gattcggatttttgagaatcatgtttttccggctgaaaatgccggaagtg
tgccggaaatcgccgtttttgcagatttgaattgtgctttttccatatat
ttctttgtttttttNtttttatgaaattttgcacattgatgcaaaatgac
aatacctaaaatgtgacggagcccgattttcgaaaaacattttttccggc
cgaaaataccggaaatatgccggaaaaactgtttttttggcactttatcg
agatttcatcattagttttttctgattttttgcatattaacaatgcccaa
aacatggccgagtccaatttttgagaaaaaaatttttccggcttaaaatg
ccggaaatatgccggaaatcgccgtttttgcagattttcattggactttt
tcctaatatttctttgtttttttNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTtctatttaaaggattttaggtataattcgaagacgaaaaat
tatccattgttttactctatatctaaaacttcgcaaaaatcagtgatttt
caatgggattttcaacagtttactactgaaaaattatattttaatgtaaa
ttgaagcataaaaagctattctaaaaaaatttggcgttatttacggacct
aattggcgtaagcccaaaatcaggctatggcgtaataagggccggcgtta
aattagggccagCGTAAAAAGGGCTGATAATATGTATTCAACTGGGGAAG
AAACCTGACCAAATTTTTCAGACGGGGTCCTAGTAGGTCTGAGACACAGG
GGTGTCACTTGGAGCTTTGAATTTAGTACCAAACTTAAATTCGATTTTAC
TTGTGGGGTTCCATATTGGcctatatttttttttgatgcgAGCTTtcaag
ggaaatatattggacAGTATTCATTATTATTAGACGCAGATGTGCGAATG
GACTGCAGTAAAATCTTTTCGTGGGGGGTATGGTGTCTAGGGGTATCAAA
GGATTTCGAAAATTTACCATGTCGTAGAAGGCATGGTGTCAGGGGTATTC
TTTTTGTCCATTAAATAATTTGATGTTTTTCCGTCATTTTGTATATGTGA
TGTgatgtgaaatatttttaagattgttGTGACTAAGATGCTGGTTGTTT
TTGTTCTGATGTCGATNTATTCTTTTTGTCCATTAAATAATTTGATGTTT
TTCCGTCATTTTGTATATGTGATATgatgtgaaatatttttaagattggT
GTGACTAAGATGCTGGTTGTTTTGTTCTGATGTCGATGTGTTATCTTTGA
GTATCATCATGTGACCAACCCTGTCTCCTTCTCCTATCTAAAGCTATTAC
AAAATATCTCACGACGTCACAAACAcacaaattttctttcaatcaataaa
ttcattaaaatataGATAACATTATTCCACTCTAACCATATCTTGCCCCT
CTATTATCCTCAAAGtataaaaaagttacaaaagaattttctacaaaaat
ttGTTTATAATTTACTACCTTTCAATTGATATCCTAGTAAAGCGGAAATT
TGTTGAACTCGACATGttctatcaaaatatttttcttttcgtcCTTATGC
TTTCTGTGTCAGCTCAAGATAAGGTAATTACTTTCCCTACAATTTTCAAA
GTGACATCTAATTTGGTAATCGCTAGCTAGGTAGTTCCAGGGAGAGTTGT
TGAAAAAACTTATGACCCTAATATGAAGGAAATTGTACCATGAACTAGAG
TGAGATTGATTGTGTCAATTGAATGTATTACAACCATTTTCAATCATAGA
GCGTACCAGAGAACGTGTTGAAGAAATTGCAAGGTGGTGACTTGGAGACA
CTGTTTCACAAATTGAAGATTGAAGAACCACGGCAAAGAGGATTTGGTAG
GTTGTTCTCTCTTCTTCGTATCGGTTTTGTTGTATTAATTTTTGTGGTTA
AAACATTGCCATGTATTGTTAACTTGTTCCATTCCATTCTAGACGCCATT
CTGTTTCCCAACCAGCCATGTCTTCCACGAAAAACGGTCATTGAAGTCCC
TCAACCGAGCAGCGTGAGCAAGATCCATTTCCCTTACTATGTGGAAGTGC
ACCGATGTGCTGGTGGATGTGGCCCTATGCAATTCCTTTCCAGATGCCAA
CCTAAAGGTACGTTTATCACTATCTGTGTATAACTTTTAAATCATTTAAA
GCGGCGGTGAATATGTCAGCAGTATTGAAAAGACACTATGATCCTAATAT
CAACTGGGCAAACATCCATTTTGATACATTAGACCTGTCAATTGCAACAT
TTCGCAACTTTTACATTTAGAGACAAAGAAGGTTCGTGCTAAAGTCATTG
CTTTAACCTGGACCTCGGGAAACCCAGAAGATGAAATTCCACCGGCATTG
GCTTACGTTGCCATCACCAACCATACATCATGTGAATGTGGATGCAAACA
TGAAGGGAATGAATGCAATCGTTTCCAGTTCTGGGATACAGCTCGTTGTC
GGTGCAATTGTATGAGCTGGGGATGCCCAAAAAACTTCGAGAAAGACCCG
AATAATTGCTGTGCTTGTCCCATTCGAGAACGTTTTTGTCCTGCCCGTAA
ACAGGAATGGATTCAGTCTCGCTGCGCTTGCGTGTGTAAAAATCTTCACA
AGAAATGTCGTTTCCCGTCGAAGATTCGGGACCCCAATACGTGCAAATGT
GTTTGCCCACCCATTATTTGTCGCTCTGGCAGCAAGTTGGACAGCAAAAC
ATGCCATTGTCAACCCGATAATTCATAACCTTGTGGTGGTATACTCGAAA
AGATTAATTTCCTCAAATAGCCAAATACGTTTTTCTGCGCCAATTTTTTA
ATAGCGAGATTTGATTTAAATGTTCTTTTCTCGTTGGTGATTTTTATTCA
AACTCAAGTTTTGTGGCACCATCCCTCAAATAtaagaaattttgtatttt
cttcgaGAACCtcagacttttttgttttcatatcgAAGGTTTCTATATTC
TATAAAgtgtgtccaaaaaaaaatcagaaccAATTTTACATGAAATTAAA
TCCTCAAAACTGGTTATTCCAAGCttgttaaaatttatttttgattttga
ttgataaGGTTATATGGCTACATAGAacacttactctcgggtacctaata
gccgtcccccccccgctaattaatttttcaaaaattttccacccaggaca
ttcttattccaaccccccgcttataaatttttgggaaaatgtttttgaaa
gttcccttttttgtcttaattctgctgtattagcctccctttcaaacatt
ttccacccaggacatttttattccaacccccccgcttattaaattttgag
attttttccaacccccccggctattaggtacccaagagtaatATTATTAA
GTTGTGCTCATAGTATAGTGAAAAAGTGCCCACAATGTATTGCCAACTCA
AGAggattcctttttataatagagtatgTGTTGTTAACTTCGTACCTTAc
cgtccgcaaaccatattgttcACATATTGTGTTGTTTAAGCAGTCCTTAT
AAAGGTTATATTTAAATTCTGCTCCGTTTTTTTTCGCGGACACACTGTGT
TTAGCTAGAAGACCTTCCGTGTATTAGAtaattttattataaaaaaacca
aagtaattctttgtttttatgtatttttattttattttagctGTTTGTTA
TGAAACACCACAGGAAATGTAATTTTCAAGTAATTTTCATCTGAGAGCAA
TCTTAAGAACAAAGATATACATTAATCCAGTAGTAATAAAACCCGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031376	XLOC_031376	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_159	supercontig	scaffold_159:127640..135185 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.384657	0.26906	0.215124	0.243307	0.867201	0.477359	0.830108	0.932397	0.770074	0.829427	1.09294	0.618793	0.436007	0.549778	0.606847	0.657278	2.14295	1.84873	0.749312	0.760101	1.39302	2.12441	1.748	1.06982	4.06471	4.9255	1.08215	0.575199	0.380616	0.524

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00049431 vs. Swiss-Prot (Human)

BLAST of TCONS_00049431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00049431 (transcript) - C. hemisphaerica