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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049466 ID=TCONS_00049466|Name=TCONS_00049466|organism=Clytia hemisphaerica|type=transcript|length=754bp
ttcatgATGATAAAACCAATCAGTATAGACGTATTCCCGTAATACATTAA
GTATGGTACGTAGCCGATCTTGAAATAAGCGAACGGGAGTGTTAATGACA
AAATCCAGACCACTACAGACACTTTAATGCATCTAGACCAGCTTAAGTAC
AATCTGTATTTTATTGGTCTCACAATTGCTATATATCGATCCATTGATAG
TGCTAATAAACTTAACAAGCTTACATGCGCCGAGATGAAGTAAGACATAG
CTAGTATCTCTGACCACACTGGAGAGATGAAGCCATGATGAATCTCTTGG
TAATGTACATAAAATGAGATCGGCATCGTCACAAACGCGATAATCAAATC
ACTGATAGCTAGATTCACCAGAAAGTAATTGAAAGGTGTTCGTAGCTTCT
TCAAAGGGTCTTTTACCACCAACCAAATAATAAGGGAGTTACCAACGGTT
CCAAAAATACTCATCCCCACTGATAAAATACATGTTATAATGTTTAGTAT
GAGTGGATGAGGGACAAGTTTTGACAAGCAATCGGCACCTCTTGACTTGT
TCATCCTTCTGAAAACTACTTCTCAAACGCTCGTCCAGGTTGTAGGATAT
TACCAGTGCTGTACTTTATCCCCCTTTAACTGATGACAAATTCAAATATG
AacggtttgtttgttttgaatattctACAGTCGTCTTACATTTCCTACTT
GAATTCAAATGTAATCTAACTGTGCTAGACTCTATGatataaagtcaaaa
aatt Run BLAST on NCBI protein sequence of TCONS_00049466-protein >TCONS_00049466-protein ID=TCONS_00049466-protein|Name=TCONS_00049466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MNKSRGADCLSKLVPHPLILNIITCILSVGMSIFGTVGNSLIIWLVVKDP
LKKLRTPFNYFLVNLAISDLIIAFVTMPISFYVHYQEIHHGFISPVWSEI
LAMSYFISAHVSLLSLLALSMDRYIAIVRPIKYRLYLSWSRCIKVSVVVW
ILSLTLPFAYFKIGYVPYLMYYGNTSILIGFIIM Run BLAST on NCBI transcript from alignment at scaffold_159:1301..2054 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049466 ID=TCONS_00049466|Name=TCONS_00049466|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at scaffold_159:1301..2054 (Clytia hemisphaerica)
aattttttgactttatatCATAGAGTCTAGCACAGTTAGATTACATTTGA
ATTCAAGTAGGAAATGTAAGACGACTGTagaatattcaaaacaaacaaac
cgtTCATATTTGAATTTGTCATCAGTTAAAGGGGGATAAAGTACAGCACT
GGTAATATCCTACAACCTGGACGAGCGTTTGAGAAGTAGTTTTCAGAAGG
ATGAACAAGTCAAGAGGTGCCGATTGCTTGTCAAAACTTGTCCCTCATCC
ACTCATACTAAACATTATAACATGTATTTTATCAGTGGGGATGAGTATTT
TTGGAACCGTTGGTAACTCCCTTATTATTTGGTTGGTGGTAAAAGACCCT
TTGAAGAAGCTACGAACACCTTTCAATTACTTTCTGGTGAATCTAGCTAT
CAGTGATTTGATTATCGCGTTTGTGACGATGCCGATCTCATTTTATGTAC
ATTACCAAGAGATTCATCATGGCTTCATCTCTCCAGTGTGGTCAGAGATA
CTAGCTATGTCTTACTTCATCTCGGCGCATGTAAGCTTGTTAAGTTTATT
AGCACTATCAATGGATCGATATATAGCAATTGTGAGACCAATAAAATACA
GATTGTACTTAAGCTGGTCTAGATGCATTAAAGTGTCTGTAGTGGTCTGG
ATTTTGTCATTAACACTCCCGTTCGCTTATTTCAAGATCGGCTACGTACC
ATACTTAATGTATTACGGGAATACGTCTATACTGATTGGTTTTATCATca
tgaa Coding sequence (CDS) from alignment at scaffold_159:1301..2054 >TCONS_00049466 ID=TCONS_00049466|Name=TCONS_00049466|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_159:1301..2054 (Clytia hemisphaerica)
ATGAACAAGTCAAGAGGTGCCGATTGCTTGTCAAAACTTGTCCCTCATCC
ACTCATACTAAACATTATAACATGTATTTTATCAGTGGGGATGAGTATTT
TTGGAACCGTTGGTAACTCCCTTATTATTTGGTTGGTGGTAAAAGACCCT
TTGAAGAAGCTACGAACACCTTTCAATTACTTTCTGGTGAATCTAGCTAT
CAGTGATTTGATTATCGCGTTTGTGACGATGCCGATCTCATTTTATGTAC
ATTACCAAGAGATTCATCATGGCTTCATCTCTCCAGTGTGGTCAGAGATA
CTAGCTATGTCTTACTTCATCTCGGCGCATGTAAGCTTGTTAAGTTTATT
AGCACTATCAATGGATCGATATATAGCAATTGTGAGACCAATAAAATACA
GATTGTACTTAAGCTGGTCTAGATGCATTAAAGTGTCTGTAGTGGTCTGG
ATTTTGTCATTAACACTCCCGTTCGCTTATTTCAAGATCGGCTACGTACC
ATACTTAATGTATTACGGGAATACGTCTATACTGATTGGTTTTATCATca
tg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049466-exon-scaffold_159-1491911889:1301..2054 | TCONS_00049466-exon-scaffold_159-1491911889:1301..2054 | Clytia hemisphaerica | exon |
| TCONS_00049466-exon-scaffold_159-1510915933:1301..2054 | TCONS_00049466-exon-scaffold_159-1510915933:1301..2054 | Clytia hemisphaerica | exon |
| TCONS_00049466-exon-scaffold_159-1575043694:1301..2054 | TCONS_00049466-exon-scaffold_159-1575043694:1301..2054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_159 | supercontig | scaffold_159:1301..2054 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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