TCONS_00049467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049467
Unique NameTCONS_00049467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049467 ID=TCONS_00049467|Name=TCONS_00049467|organism=Clytia hemisphaerica|type=transcript|length=345bp
GTTCCATCGTCTACAACCAATGGTTCAAGTAAATTGTTTTCAATGACGTC
ACCAGAATCTAAACATGGAAATGTGATCCGGTTCCTTGACCAAATGTCCT
TAATTGACTCACGATACTGTCTCAATCGAATGGTGCATATCCAAGGATTA
ACACAACTGTTAAGAACTACCAACAAAAATTGAGCATCTCTCAAAATATG
AGATGTGTCACATGAGCAGGTTTCACAAAGATGTACTACAGCGTTTATCA
GTGCCGCGATTACGTACGTCACAAAAAATAGTGCCGTTAACGTGAAAAAT
ACATCAGTCACTTTACGTTCAATCTGACGGGAGGCTGCTTCACGG
Run BLAST on NCBI

protein sequence of TCONS_00049467-protein

>TCONS_00049467-protein ID=TCONS_00049467-protein|Name=TCONS_00049467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
REAASRQIERKVTDVFFTLTALFFVTYVIAALINAVVHLCETCSCDTSHI
LRDAQFLLVVLNSCVNPWICTIRLRQYRESIKDIWSRNRITFPCLDSGDV
IENNLLEPLVVDDG
Run BLAST on NCBI

transcript from alignment at scaffold_159:2121..2465

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049467 ID=TCONS_00049467|Name=TCONS_00049467|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at scaffold_159:2121..2465 (Clytia hemisphaerica)
CCGTGAAGCAGCCTCCCGTCAGATTGAACGTAAAGTGACTGATGTATTTT
TCACGTTAACGGCACTATTTTTTGTGACGTACGTAATCGCGGCACTGATA
AACGCTGTAGTACATCTTTGTGAAACCTGCTCATGTGACACATCTCATAT
TTTGAGAGATGCTCAATTTTTGTTGGTAGTTCTTAACAGTTGTGTTAATC
CTTGGATATGCACCATTCGATTGAGACAGTATCGTGAGTCAATTAAGGAC
ATTTGGTCAAGGAACCGGATCACATTTCCATGTTTAGATTCTGGTGACGT
CATTGAAAACAATTTACTTGAACCATTGGTTGTAGACGATGGAAC

Coding sequence (CDS) from alignment at scaffold_159:2121..2465

>TCONS_00049467 ID=TCONS_00049467|Name=TCONS_00049467|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_159:2121..2465 (Clytia hemisphaerica)
CGTGAAGCAGCCTCCCGTCAGATTGAACGTAAAGTGACTGATGTATTTTT
CACGTTAACGGCACTATTTTTTGTGACGTACGTAATCGCGGCACTGATAA
ACGCTGTAGTACATCTTTGTGAAACCTGCTCATGTGACACATCTCATATT
TTGAGAGATGCTCAATTTTTGTTGGTAGTTCTTAACAGTTGTGTTAATCC
TTGGATATGCACCATTCGATTGAGACAGTATCGTGAGTCAATTAAGGACA
TTTGGTCAAGGAACCGGATCACATTTCCATGTTTAGATTCTGGTGACGTC
ATTGAAAACAATTTACTTGAACCATTGGTTGTAGACGATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031384XLOC_031384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049467-proteinTCONS_00049467-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049467-exon-scaffold_159-1491911889:2121..2465TCONS_00049467-exon-scaffold_159-1491911889:2121..2465Clytia hemisphaericaexon
TCONS_00049467-exon-scaffold_159-1510915933:2121..2465TCONS_00049467-exon-scaffold_159-1510915933:2121..2465Clytia hemisphaericaexon
TCONS_00049467-exon-scaffold_159-1575043694:2121..2465TCONS_00049467-exon-scaffold_159-1575043694:2121..2465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:2121..2465 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.358414	0	0.0156867	0.675878	0.781076	0	1.87773	0.622251	1.73728	4.52205	0.0415177	0.490697	4.39743	4.87879	0.488808	0	1.89529	2.09718	0	0	6.10447	4.94526	1.15816	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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