TCONS_00049468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049468
Unique NameTCONS_00049468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049468 ID=TCONS_00049468|Name=TCONS_00049468|organism=Clytia hemisphaerica|type=transcript|length=550bp
GAAAGATCTCttaaaaaatagcttgccacaATCTAACTTCTTAAACTTTC
AAACCATTTATCCTGTGTTTAGAATACAGGAGCTTACAATATCAATTCAA
ATTTAAACATCTCCATAATacaaaaaagaaggaaaacaTAGACATCTCAA
GGTTATCTAGGCAAAGTTTACTAAATTGCAACGTTCCAAAATGAAATGTA
ACATTTTATCCCCTAAAACCTGCCTTTGATAGTTTGAAGGTTACTAATTG
TATTGTATAATTTAATTTTGACCCATTTCTAAATATTTAAATCAAATATT
TGTACTATTTCACTCAAGAGCGTCCAGACCCTGTTTTAAAAACACACCTA
CATGGCATGCCATAACTTTGAGTAAAcccttcttttaaacacccTTGGAT
AAATGCCTCTcctttgagaaaaatttctcaATAAACGCCCCTTTTGGAAA
AATGCCTCCTCTTTTTAGGAGGGCGGAGTATATTTGAAGCAAGTAGCTGT
GAGGAAGTATTATATCAATGAATGTATAATTGGCACTCTAACCACTGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_159:32797..33346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049468 ID=TCONS_00049468|Name=TCONS_00049468|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_159:32797..33346 (Clytia hemisphaerica)
CAACAGTGGTTAGAGTGCCAATTATACATTCATTGATATAATACTTCCTC
ACAGCTACTTGCTTCAAATATACTCCGCCCTCCTAAAAAGAGGAGGCATT
TTTCCAAAAGGGGCGTTTATtgagaaatttttctcaaaggAGAGGCATTT
ATCCAAgggtgtttaaaagaagggTTTACTCAAAGTTATGGCATGCCATG
TAGGTGTGTTTTTAAAACAGGGTCTGGACGCTCTTGAGTGAAATAGTACA
AATATTTGATTTAAATATTTAGAAATGGGTCAAAATTAAATTATACAATA
CAATTAGTAACCTTCAAACTATCAAAGGCAGGTTTTAGGGGATAAAATGT
TACATTTCATTTTGGAACGTTGCAATTTAGTAAACTTTGCCTAGATAACC
TTGAGATGTCTAtgttttccttcttttttgtATTATGGAGATGTTTAAAT
TTGAATTGATATTGTAAGCTCCTGTATTCTAAACACAGGATAAATGGTTT
GAAAGTTTAAGAAGTTAGATtgtggcaagctattttttaaGAGATCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031385XLOC_031385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049468-exon-scaffold_159-1491911889:32797..33346TCONS_00049468-exon-scaffold_159-1491911889:32797..33346Clytia hemisphaericaexon
TCONS_00049468-exon-scaffold_159-1510915933:32797..33346TCONS_00049468-exon-scaffold_159-1510915933:32797..33346Clytia hemisphaericaexon
TCONS_00049468-exon-scaffold_159-1575043694:32797..33346TCONS_00049468-exon-scaffold_159-1575043694:32797..33346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:32797..33346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728282	0.507278	0.706799	0.345746	0.420912	0.11087	1.07008	0.250449	0.438364	0.325791	0.527034	0.554322	0.899521	0.50301	1.00432	0.950988	0.859129	0.160105	0	0.347196	0.603552	1.61915	0.119291	0.325357	0.223407	0.0996927	1.4266	0.609002	0.34643	0.235305
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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