TCONS_00049473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049473
Unique NameTCONS_00049473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3041

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049473 ID=TCONS_00049473|Name=TCONS_00049473|organism=Clytia hemisphaerica|type=transcript|length=3041bp
cttagacaaaaagaaaaacgtttaTTACAATAATGTCAGAGGAAAGCTTA
CCACCAGACTGGATCAAATGTATGTCAAAGAAATTCAAACAAGCCTATTT
TTTCAATACGCAAACAAATGAAACATCATGGGTCCATCCCTTACTCAAAA
ACAAGGGAGTACCAGATGAACCAACTGAAAAGACTAAGCCTTCAAAAGGT
GAcataaatgcaaaaatgaaaaagaaaaagactgatgAAAAAGCGAGCAG
CGGCAAAGAGCCCAACAAAAACCtcaaaataccaaaacaaaccaaaccaC
CTATCAGTAAAGCCAAAGAGAAACCTGATCCTAAGAAACTCTCCTCAAAA
GAACTAGAAAAGCTGGGAGTTGCTCAACGAAAAAGGACAGAGAAAATAGC
TCTATGGGctgaaaatgtaaataaatcATCCAGTAACCCTAAGAACTCTT
CAGAGACTCAAAAAACGAAACCGAAAAAGAAAGCTAAAGATACATCTGTA
ACTTCAAATGATGAACCAAAGACAGAGACTGCTAAAGAACCAACATCAAA
GACTGCTAAACGGTTGTCAGAAATTATTAACAAAAAGACTGTCGACACTT
CCAAAAAGATACCAAAAATAccgaaaaaagataaaaataaaaccaaagaa
GCTGGAAAAGAGACTGAAAAGAATACAACAAAGGAACTGAAACCTCAAAC
AGAAGACAATGAAAATCCTTTCTTGTTATCGTCAAAGATTTCTTATGCTA
ACTATATTGAATCGCCAAACCCTTTTGCGCCAACAACAAAATCAAGTAGC
ACGGCAGAACCAAAATATGACAATTTTGTAGACTCTCCAAACCCTTTTGC
ACCGACAGCAAAACCTAACAGCTCAAAAGAACATATCAATTATATTGAGT
CTCCACATCCTTTTGCACCGACCACAAGAACTTTCAATAGAGAATCCAGC
AACAACATTCAACAAAATGAAACTGACGAGGATATGACGGAGGATGAGAA
TTTAGCTGACCAGCAAATTCATTTCAACAAATCTacccaacaacaacaaa
atagtAACATATTTAACACACATCAACAACAAAATccatttaaaaaagaa
caaccTTTTAcgtttcaacaacaaaataacccttttcaacaaaatgtaaa
caattcTGCTCAACATCCACAAACTAGCACTTTTGGGCAAAAAAATGGAT
TTCATCAACAAGACCCTCAACCAACATCACACAGCGGTAGATTAGAGGAA
CAATCTTTGGCTAACTATGCACCGATAGTTCAAGAAGGAGAAGCTTCAGA
TATGGAAATTGATGACGTCGTACAATTTAGTAAAGAAATCATGAAAGAGA
TTCGTGAAATGCGGAGTGAGAATGTTGTATCAAAGCCGGCTGTTGCAACT
GAAAATGCACCCATGGAAGTGAAAAACCTCATTTACACGGATCCATTGTA
CATAGTACTTGACACTAACATTTTGTTAGCTCATTTGAAATTTGTTAGTG
ATCTCAAAGATTATCCAATCCCAGGTATTGGAACGCCTATTCTGTATATA
CCTTGGATGGTACTTCAAGAGTTGGATTCTTTAAAGgaCGCTGTGAATAG
GCACCATACACAAACAGATCAAAGTGGTGCAGAGAAAACGTACAAGTTGA
ACATATTGGCAAGAAAAGCGATCAAGTTTATCAACACCTGTTTGGAAGCA
GACCACCCGAGAGTCAAAGGACAAACTGCAATCGAGGCCAGTACACCGAT
CGATGGATTTACTGAAGAATCGAACGATGATGCCATCATCCATGCAGCAT
TGAGTTTGAAGTTACGAGCGTGTCACAGTAATATTGTCATGTTTTCCAAT
GATCGAAACCTGTGCAATAAAGCAATGGTGGGAGGAATCAAAGCTTTTTC
TCAACAGAATTTAATGATGGGTATCCGAAGTCTTTATCAGAATGGAACAG
TCGCCATACGCAAAGAAAATTATCAAGAGTATTACGAGGCTTACAAGGTT
CAAGAAATCATTGCTAAAGAGCGAAAGCAAGCGGACGAGCTGTCGTGCGA
ATTACAATGTATGCTAAGAGAAGGTCTGTCGCAGGTTATCGAGCATGAAA
TGAAAGAAGCTTATGGACCTGACATGTGGTTACATATTGTGAAGATTCAA
CCACCGTGGACGTTACAAGATGTGTTCACCTTATTAGAAAAACATTGGAT
AGCAGTGTTTGGTCATGTCATTCAAAGAAATCGCTTGAAGATTGTAGAAG
AGTTGAAGAAGAAATTTCAAGACGCCGAAGGTATTGCTGGTACGTTACAA
GTTTCACATGACCTGATTGAATTCAGCGTCAGATTGTTTGAGGCTTTCTC
CATTCGGTCCAGTTACAATGACATGATGACAAAGTGTTTGGCCGGCTGCC
GTGTGTTGTTAGACAAATGCAATGAATACATTCAAGAGAAAAACGGAACT
GTCGCCCATGCCAACCCGAACCAAGGGAAATTACATCAAACCAAGGAGAA
TGTATCAGTGGAAAGAGAAGAAGGCGAAGCCATCCATACAAACACTGTTA
AACATGGAACAGTTTTGGACACTTTTGATGATATTTGGAGGACAGTTACT
CATTACAGCGCGTTGATTTTTCGAAGTTTGGATTTCCCAAGTCAGCTGGT
GAAGGAACTGGACCCTAACGAACCAAAACCTGACCCCAAAGAAGCAAACG
CCTGTCTCACTGTCATGACCAAATGTCTTCTACAACTTATTCGAAAAATT
CAAGACGTGGTGAGGATACCAGTGGAACGTCTTATAGAATCAGAAGAAGT
TTTAGTGCAACTTTTACAAGCGGTTTCCGCTTTTATGAAAGAGGTGATGA
AGAGGGAATGCTTCGTGACTCCCATCGAACTTCTACACTTTTCACAAGAT
AAAAATACCAGGACTGCCCTGATCCAAGGTTTATCACAACTCGATCGCTC
TTATGCCATGCTTCAACAATGTATCGAATACCAGCGAtctatttgaagaa
aaaacgaaCATTTTAATACAttgggctttttcagaaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_16:36781..48122+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049473 ID=TCONS_00049473|Name=TCONS_00049473|organism=Clytia hemisphaerica|type=transcript|length=11342bp|location=Sequence derived from alignment at scaffold_16:36781..48122+ (Clytia hemisphaerica)
cttagacaaaaagaaaaacgtttaTTACAATAATGTCAGAGGAAAGCTTA
CCACCAGACTGGATCAAATGTATGTCAAAGAAATTCAAACAAGCCTATTT
TTTCAATACGCAAACAAATGAAACATCATGGGTCCATCCCTTACTCAAAA
ACAAGGTAATTTTAAAGTTAAACTTCCCTTTTATGGACTTTATAATGAAT
TTTcgaaattgagatttttttgcaaggaaaaaattgaatttgaaaatggg
cttttccagaaaaaatttgaatatggggggtggaggagataaaaattttt
ggaaattcacCCCTCCCCCCTGCGATAGTAGGTCTAACCCCCTAGACAAG
CATTAGtttaccccatggacaatcaaaattacccccaaacagagcaagtt
taccccccggacaaggcaaattttgtagatttttactaccccggacacta
tatcctccatcccccatgtatggacattttctggaagagcccaatctcAG
AAATTTTTTGATCTAATTTCATTTAAAGCGTCATAGTCTACATAAGACGA
AGAATAACTAGCAACCTTTTTCTTACTCACACCATACCTTTGTTGTTTCA
GGGAGTACCAGATGAACCAACTGAAAAGACTAAGCCTTCAAAAGGTGAca
taaatgcaaaaatgaaaaagaaaaagactgatgAAAAAGCGAGCAGCGGC
AAAGAGCCCAACAAAAACCtcaaaataccaaaacaaaccaaaccaCCTAT
CAGTAAAGCCAAAGAGAAACCTGATCCTAAGAAACTCTCCTCAAAAGAAC
TAGAAAAGCTGGGAGTTGCTCAACGAAAAAGGACAGAGAAAATAGCTCTA
TGGGctgaaaatgtaaataaatcATCCAGTAACCCTAAGAACTCTTCAGA
GACTCAAAAAACGAAACCGAAAAAGAAAGCTAAAGATACATCTGTAACTT
CAAATGATGAACCAAAGACAGAGACTGCTAAAGAACCAACATCAAAGACT
GCTAAACGGTTGTCAGAAATTATTAACAAAAAGACTGTCGACACTTCCAA
AAAGATACCAAAAATAccgaaaaaagataaaaataaaaccaaagaaGCTG
GAAAAGAGACTGAAAAGAATACAACAAAGGAACTGAAACCTCAAACAGAA
GACAATGAAAATCCTTTCTTGTTATCGTCAAAGATTTCTTATGCTAACTA
TATTGAATCGCCAAACCCTTTTGCGCCAACAACAAAATCAAGTAGCACGG
CAGAACCAAAATATGACAATTTTGTAGACTCTCCAAACCCTTTTGCACCG
ACAGCAAAACCTAACAGCTCAAAAGAACATATCAATTATATTGAGTCTCC
ACATCCTTTTGCACCGACCACAAGAACTTTCAATAGAGAATCCAGCAACA
ACATTCAACAAAATGAAACTGACGAGGATATGACGGAGGATGAGAATTTA
GCTGACCAGCAAATTCATTTCAACAAATCTacccaacaacaacaaaatag
tAACATATTTAACACACATCAACAACAAAATccatttaaaaaagaacaac
cTTTTAcgtttcaacaacaaaataacccttttcaacaaaatgtaaacaat
tcTGCTCAACATCCACAAACTAGCACTTTTGGGCAAAAAAATGGATTTCA
TCAACAAGACCCTCAACCAACATCACACAGCGGTAGATTAGAGGAACAAT
CTTTGGCTAACTATGCACCGATAGTTCAAGAAGGAGAAGCTTCAGATATG
GAAATTGATGACGTCGTACAATTTAGTAAAGAAATCATGAAAGAGGTAAA
CCTTATTTTTACCCTGTTTTATGGCAGTCTAAATGATTTTATTGTTATTA
ATATCATTATTGCTGAAAGAGTCTTTTCAGATTCCAGCCTAAAAATGGTG
TTTTCAAGAAATGATGATCTTCAATTAAAGatacatttaaaaaaaggttc
AATTAAAAATATAGGGATAAGCATTACTGCATGGTTGCAGACACTATTTA
ATCCAATAAATTCAAAATCTGATTTATTCGTTCATCCATCAATGACAGGT
CTGGGGTTGCTAAGCCAAGTTGTTAGGCCTTTTGGCTATTTCCTTGATTG
AATCCTCAGCCACAGAGTTGCCCTAATGACCATTTCTAGTATCTAGAAAC
CTTGTGGTATTTTGTTTCAGATTCGTGAAATGCGGAGTGAGAATGTTGTA
TCAAAGCCGGCTGTTGCAACTGAAAATGCACCCATGGAAGTGAAAAACCT
CATTTACACGGTAAACTAAGGATATCAACGAGTCACCCATATGACACATC
CtaactttttatttgatcaTTTATCTTTGATAGAGCTTGATATTGATGAA
TTGTTTTCAATTAACCTTCTTTCATCATCCAGAAGTATATTGCTTCGTTA
AATCGATGCTTACTGTACAGACTCTAATATGTAGGGTTTTAGTCAAATTA
TTTTTGTGTGTTTCAGGATCCATTGTACATAGTACTTGACACTAACATTT
TGTTAGCTCATTTGAAATTTGTTAGTGATCTCAAAGATTATCCAATCCCA
GGtaaacaaaatattgaaaaattttcatgtCTTCATTATGATTTTAATCT
ATTATTCCAACAGTGTTATATATTCATCTGTTGGCTGTTGGCAGAACTAG
GATTGAGAGAGTCTACCCCCTTTTCTATTCGCGCTAGACCTGGGAAGTGG
AGCGCTACACCTaatctcagctcccagtaatttatcgcctagatcagatt
accaaatctaagctactcattcaCTAGAGTTGGTGGTGACCAGGGATTGA
ACCCATAACCCTTTGATTGTAAAGTGAATGCTCTATCGACTGTGCTGCCC
TGAACAACATGGTGAAAGGTGAAGgtgaaaaatgtgaaatattAATTAGC
CCACCTTGAACAGTTCTTAAAGAAGATATTTTTAATTAACCCAAAATTTT
ACTTTGAAATGACTATTTTTCAGGTATTGGAACGCCTATTCTGTATATAC
CTTGGATGGTACTTCAAGAGTTGGATTCTTTAAAGGTGAGAACCCTCTCT
TTGTTACATTCTTTGAGTTggaatttgaatatgaaaacAGATCTTTTGTT
TGTGTTCTCTTGTAGAAAAGAACTGTGGGGAAATGACATTTCAATCAATG
ATGACCTTTATCTCCTTGTCCCAAATATTTCTCAAAGATAACGTAATTGT
ATTCCCTACAGTTCAGGCTGATCTTTTCCCAAgagattcaaataatagaa
cCTCTAAATCAGTTAAAGATCGAGCACTCAAACTAACTCTATGAGCCAAT
CGGTGAAGATTGGAAATTTTATTTGTATTCACTTTTGCAATACACCACGC
CAGTAaccaaaagaaattaaaaatgactCTTTCGTTTGGGCCAGCAATAA
AATATGTACACttactttaaaatatttttttttctaggaCGCTGTGAATA
GGCACCATACACAAACAGATCAAAGTGGTGCAGAGGTAAAACGaaaattt
ccattttgtttttcaaactaCAGCAAAACCTCTAATTAGCCTTACATTAT
CGGGGAAGCAAGAGAGATGTGATTGTTAGCTTTTACACTTTTTGCTACCA
TTTACAGTGAATGAAAATAATGAGCTTTTTAGCCGTACGTAatacattgg
gccattccattttatatccatacagggggtagacgaacatttccaggggg
taatcgaGCAGAATTTCCAGGGTGTCTAAATGagtattgtttcatttttc
cagggggtagtaaaaatattataaaatttccagggggttaaagACTGATT
TCAGTTCGTCCACcatcactttaaggtatgaaaagaaatttacttttttt
acttgaaaaggttAGTCTATTCCCCTGtatgaaaatttaatggaataGCC
CTTCCACACATAAATATAGAAAACAGTATGATTAAATTGATGCCGTCAGA
AAAACTTTAAACGCGTGTTTCGCCGCTAGCTATTTATCAAGTCTGTTTAT
CGGAAGACTTCCGAAAACCACTTACGGAGCCGTCTATTACTCGAAACTTA
CTTGGTAACtaacttagaattttttttcggtcaacCATTATAAGATTATG
CCTCTACTTTTATGTAATGGATAACctaattattcttttttttctttctt
catcaGAAAACGTACAAGTTGAACATATTGGCAAGAAAAGCGATCAAGTT
TATCAACACCTGTTTGGAAGCAGACCACCCGAGAGTCAAAGGACAAACTG
CAATCGAGGTAGGTTATATAGTATGGTAGAGTAGGGTAGGGTAGGGTAGC
TAATCTGAGATTAGCTACCTTACCCTAAATTTTTTtagacctacctcgga
ggtcctataaattaaccgatgtccgttcgtccgtccgttcgttcgtccgt
ctgttaccagcttttctcaggattggctcattagttttttctgatttttg
gcacattgatgcaaaatggcaatgcccaaaatgtgacggagcccgatttt
cgaaaaaaaattaatgccggaaatatgccggaaaaagtgttttttggcat
tttctcgagattttatcattagttttttctgattttttgcagaaagatgc
gtattcacaatgctcaaaacatgaccgagttcgatttttgagaaaaaaaa
ttttccggccaaAACTTGCCGAACATTTCCGTTtgtgcagattttcattg
gattttttcgttttatgcctttgtttttttcaagcaaaaacattatttat
aagaatgtccacgattaagcatggttcaattttcaactgGTTTTGGTACa
gaaactttctaaaaatcgccagaacagccgagaatcgccggatttcttga
atttctcgagtttttcttgtattattctgcattttcatactattGTTGTC
ATTTTTCgattgtcttattacatcaatcttcaggtaggtccattcaacaT
GTAGCTTGTTTACTCAGATATAATACACTTACTGGGGCAGGGGGTTCGGT
ACTAAAATCCTGGACATATATGTGTACTTAAAGGATTTTCGAGAATTTCT
TGCATACCACCACCCCATTTTAgagaagtggtattttagtacccatGTGC
TAAAATTTGTCTTCTCgggaaaaattcatcaaaattatgaaaattactAT
TTTTAGTACCAATTTTAGTCTGATGAccacctttttggtattttagtaca
ccaTGGTACTAAtaggattttttaattttttttgggtaTACCACTAAACA
ACATGATGTCCTAGATTTTAAtatcgaccccccccccctaactGGGGAAT
AAAAGTCGGGAATAATTTAGTCACTTTGAGAAATTCTTGCACTTTTCCTA
GAGTAAAATTTCGTacacagaaagaaaattctattgttattgGTAATAGA
GTATAAAATATTGCTGCAAATCTTTGGGACGGGATTCTATAAACCTTTCG
ATTGTCGATTTTGGTTAATCACCCCGCCTTCTAATTTCGAGACTGAGTCA
TTTTGTTGACTTCATTTCGTTTTGGAGCAATATGCAACCTTTCTAGTCGA
AAAGAAAACGCTTAACATTATTATTCTTGCATTAACATCATCAGGCCAGT
ACACCGATCGATGGATTTACTGAAGAATCGAACGATGATGCCATCATCCA
TGCAGCATTGAGTTTGAAGTTACGAGCGTGTCACAGTAATATTGTCATGT
TTTCCAATGATCGAAACCTGTGCAATAAAGCAATGGTGGGAGGAATCAAA
GCTTTTTCTCAACAGGTAAGGTTGATCTTGATTTATGTTTTAGATATATG
ATTATAGGTATAGCTTATAAATTTCCATGCAGACTCAACTTAACAAAGCC
GAAGAACAGGATGTTATGAACTTTTTTAGATCGCATCggatttttattca
tttcataGAATTTAATGATGGGTATCCGAAGTCTTTATCAGAATGGAACA
GTCGCCATACGCAAAGAAAATTATCAAGGTATGGAAAGTTAATTACGATT
TCCCTGACTAGACCTTAAGGTgactatacaccttttcgaccgtagttgtg
cgggcattttttgtccgctttatcccactaaaaccgtcccaatccttttt
ttgacgcattttgCTATCGTCTATATGTGCGAAAAAAGGTCTGGGacagt
tttagtgggataaagcggacaaaaaaatgcccgtgcatcaattggtggct
acgatcgaaaaggtgtattctcgtgtttctttgagtttctttttGACAAA
CTTTTTAGGTACACCTCTACTATGTTGATTTTGAGGCGTATAAGCATGTG
GTTGCGAGGTTAAATTAAACTACAAACTTTTCACCAGCTCTAACTGAAaa
gagtttgaaaataaatcatATTAACTTTCAGAGTATTACGAGGCTTACAA
GGTTCAAGAAATCATTGCTAAAGAGCGAAAGCAAGCGGACGAGCTGTCGT
GCGAATTACAATGTATGCTAAGAGAAGGTCTGTCGCAGGTTATCGAGCAT
GAAATGAAAGAAGCTTATGGACCTGACATGTGGTAtgtgcaaaaaacttt
tttcataataTTCTTCCAGCCAATCTCACTAAGATCTAGTAAATTGGcct
tgatgacgtcacaaaaatagaaaaaatatctCGAGTGTGGGGTTGAGACG
AGTAATGAAAGATTTACTGTTGTTCATTGTGTACTAGATTTTGTACTCTT
TCCTATTCAAACAGAGTGAAGGAACGTGAGAGTTCTGGAGCGTGCGTGgt
tgtttttccttcaaagattTTACTGAGATGTCAAATGGCAATTTTACTCT
CATAATAACTCGTTCTGCACNCGCATATtgtttttatattgatttaacCT
TGAGAAATTTTCGCGTTAAAAAACAATTAATTAGATTATGGACTTTTGAT
GCttgtttttccttcaaagattTGGACAACGATTTTACTGAGATGTCAAA
TGGCAATTTTACTCTCATAATAACTCGTTCTGCACCTGTTATTAATACCt
attttttcttactttgtTAAAGGTTACATATTGTGAAGATTCAACCACCG
TGGACGTTACAAGATGTGTTCACCTTATTAGAAAAGTAAGTATATTTGCA
TGGACCTAGTCTAAGTCTACTTGGATCTTCACAATTCTAGAAAATCTTTT
AGAAACCACATGTCATTTTAAATGACCCATAAAACCTGGGATTTTGGCTC
TTTTTTCCTCGACTATTTGTGTTTTTTCCATAAACAAAAAGCGGGATTTT
GGTTCTTTTTTCAGAACTATTTGCGTTTTTTCCATATTATCTCACCACGT
AATGTATGTCTAGCGATTATTTACTTTAAGTGAGTGTGTCCATGTCTTAT
CAATATAAAGATCAATATCAATATAAAGAGAACTTACTGCTTCGACTAGT
GCCACCTTCTGGGTCAGGATTCATTTTCTAGAAATTAATAGTAAGTATGG
CCATTCTAAGCTTATCTTTATACCGTAATACTGAACCTAAACTTTGAAAA
TTGACTaaattcttcttcttcctttttaaCATTTGTAGACATTGGATAGC
AGTGTTTGGTCATGTCATTCAAAGAAATCGCTTGAAGATTGTAGAAGAGT
TGAAGAAGAAATTTCAAGACGCCGAAGGTACATCTCCTACtctttaaaat
aataaaagtgaaaactgaaaatttgattttattcatttcttgacgtttcg
gtgtcttctTTGCACCATGACATCGAAACGTCAAGAaatgaataaaatca
aatttttagttttcctTTTCATCATTAAATTTATCTGGCCCAgcaagaaa
ttttttcaaatctttaaatAAGTTCATCAAAGGTTCTTTAAgtaccgggt
gtttcaaaagaaaagtgtaCAAGTTTGAAGTAAGGTTGCTGAGAAAACTA
AATATGTTATAAATCTAAACTAACTTTGCAccatcagaaagaggaaaagc
tANTGTTGCTGAGAAAACTGAATATGTTATAAATCTAAACTAACTTTTCA
CCATCAGGAAGAGGAAAGGCTATCTTAGATTTTGATCTGTCATACCTTAA
ATTTGTTTCACATGTTTAAAAGTCACGAAaacaaattgaagaaattcTCT
TTCGAAAAAGCGTCATTTTTCATCCACtctttttttctcgaaaattacgc
cttttttgaaacacccggtagAAGGGTTCATAATGTCCATGCAAATAGAT
TGTACTCGAACTAAAAATCTAGAGTTTTTTAAAGATAAGTACAGATAATT
ATATCATTAGTCGTATTGTAATTAATGGTTTCAAACAGCCTCGTTCCCTG
CGTTATTAACCTGTTATTATTAACTTTTTGacgcttactgatagcgccTG
GCGtttatcagtaacgtaaataaagcctggaatacacgagGACGAGTTTG
GCTTTTAGATTAAGCTTCATTGAAACAgttaaaaaaatgtatttagTGTT
TGGGTGATTAAAGTTGTTGACGTCTTCTTCTTGTAGGTATTGCTGGTACG
TTACAAGTTTCACATGACCTGATTGAATTCAGCGTCAGATTGTTTGAGGC
TTTCTCCATTCGGTCCAGGTAATACTCTCTGCTACTTCCACATTCTGATC
ACTTCTTTTAAGTCTTAGGGTGTTTCTTTATAAAAGATTACGAATGACCT
ACCTTAAGGGACCTAATTTTCACGGGAAATTAGttccgcgaaatgcaatt
tttactatAAATCATCGAAGactcctaggaaaatgaaagaatttcaatAT
AAAGTGGGCGTCAACCACGAAAGTTCCGCAAAATACGCCCCTTTCGCGAA
TTCATACCCTGGCACCGCGAAAATAACttccgtgaaaattagttccgttT
AATTATTCTAGAGACCCAGATTAGTGGGCTTTGTACATACTATAAATTCT
ATTTATGTGAAAATATACCTATTCTAGAAATAGAAGCATTTTTCATGTGC
AAATTATATGTCAAAAGTGTCAACAGTTTTCTGACTGTTTTTCTGAATGT
TTCTTTCAGTTACAATGACATGATGACAAAGTGTTTGGCCGGCTGCCGTG
TGTTGTTAGACAAATGCAATGAATACATTCAAGAGAAAAACGGAACTGTC
GCCCATGCCAACCCGAACCAAGGGAAATTACATCAAACCAAGGTGAATTA
ACATAAAGCATAACATTTGGCCAACAAAACAAACGACACTTAAGATGGTG
TCACCATGTAAAGGAATTTTCGATATTGACTGACCCATTAAAGGATCAAA
ATATCGTTGAAAACTAAATGTCTTTTAGCTATACACCTTCGATGGTGAAT
CGGGTCACCCCGTATGCCGTATGCTCCTTGGCTGTTAATTTTATTCTAGT
GTTTAAAGAAAAGACGGGAAAAAGTCCCTAACAGGGCTGCTTTGAGACAA
TACAGTATTACTTATTGCGCGTTCTGATTTCTCACTTGAACATCTCATGA
TCAAGTCATGCATTTTATGATATCATGAATCTTCCATAGGAGAATGTATC
AGTGGAAAGAGAAGAAGGCGAAGCCATCCATACAAACACTGTTAAACATG
GAACAGTTTTGGACACTTTTGATGATATTTGGAGGACAGTTACTCATTAC
AGGTACGGTTGCTAGGCGACAAGTAATCTGTCTACTATCTTCTGGACTTT
CAAGGCAAAACCTTTCATACTGCTATGGAAAACAATGTTCTTCTTCATTT
AAATTTAAATTTAAATTGCTCTATTTATTCCCCCAAATATGTGATATTTC
AGGCTTTAAAACAGGTTTTTCGTTTTTTAATGGCGTTTTTTTGGACAAAA
ATGTCCTTCATCCGTCAAATTAAATTCCCGCCAAATTAAATTTTTCAAGT
TAACCGCCAAATTAAATTCCCTCTGAAAAACCTTTTTCAGCCATCCGCCA
AATTAAGTTCCCGCCAAAATTTCTTCCTTTAATGTAGCATCTAATGGTAT
TTTTGTCTCGATCCTCCGCCCAATGTATAAGCAATACATTGTTCTTTCAG
CGCGTTGATTTTTCGAAGTTTGGATTTCCCAAGTCAGCTGGTGAAGGAAC
TGGACCCTAACGAACCAAAACCTGACCCCAAAGAAGCAAACGCCTGTCTC
ACTGTCATGACCAAATGTCTTCTACAACTTATTCGAAAAATTCAAGAGTA
AGTCGTAAAATATTTCTggtaaaattcttttatttgtcCACCAAAGTGTT
CCTTTATATCGACATAGTTGAGTTCCAGCGATATCAAGGTAACCTTGTAG
GGTCAAGATAAGACTTTTacgaattttttgttttgataccTTTGTCATTC
ATATAATTCAAGACATTGCATCTAATCCTTTGCTAATGCTTTTGTTATCT
ATTCAAACTTTGCACATTGCAAATAGAGGATGGATCCattgtttatttgt
ttgtttagtgttatcattatttctttttgaataaattttcagCGTGGTGA
GGATACCAGTGGAACGTCTTATAGAATCAGAAGAAGTTTTAGTGCAACTT
TTACAAGCGGTTTCCGCTTTTATGAAAGAGGTATGATTAAAATACATTAT
GTGGCCTTTTTAGTGGTCTGCAGTAACTTTAAACCAACGAAATTAAGTCC
TATTACAGAGAAGTATATTATAAAaaagtatacacgttttttatttataa
gcatagccAGGCTGAGATTATGGGCTTGAAAACAATATATCTTTTGTTAT
AAAACAATAGAAGCATTATGTAAAAGTCGATCAAATTTGACAAATGAGGG
GCACTTTTTCTAGGACACCCGGTTTATTCTACTTTTTCTGATGTCTTTTT
GCTGTTTCTCTCTGTGTAGGTGATGAAGAGGGAATGCTTCGTGACTCCCA
TCGAACTTCTACACTTTTCACAAGATAAAAATACCAGGTACTTGTTGTTC
ATGCTGCTTTTCGCAGTCCGATGtccaaagaaaaataactcaTAGTACTT
CAATGGCAATTTTTGGCTACTGGTATATTGTTCTGCTTCTCCACGAGCCT
ATTGTGAACCTCATCTCCTAGATTGAGCTCAGACAAATGCATGTTTCCTT
TTATTGTCTCTGTAcgttttttggatttatttctTACCTACTGAATCAAG
AAATCCGTAATGGTGTTAACATATAGTTCCCTAAATTTTCGTTCAGGACT
GCCCTGATCCAAGGTTTATCACAACTCGATCGNGATATATAGTTCGCTAA
ATTTTCGTTTAGGACTGCCCTGATCCAAGGTTTATCACAACTCGATCGCT
CTTATGCCATGCTTCAACAATGTATCGAATACCAGCGAtctatttgaaga
aaaaacgaaCATTTTAATACAttgggctttttcagaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031388XLOC_031388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049473-exon-scaffold_16-1491911889:36781..36935TCONS_00049473-exon-scaffold_16-1491911889:36781..36935Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:36781..36935TCONS_00049473-exon-scaffold_16-1510915933:36781..36935Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:36781..36935TCONS_00049473-exon-scaffold_16-1575043694:36781..36935Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:37382..38575TCONS_00049473-exon-scaffold_16-1491911889:37382..38575Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:37382..38575TCONS_00049473-exon-scaffold_16-1510915933:37382..38575Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:37382..38575TCONS_00049473-exon-scaffold_16-1575043694:37382..38575Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:38951..39040TCONS_00049473-exon-scaffold_16-1491911889:38951..39040Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:38951..39040TCONS_00049473-exon-scaffold_16-1510915933:38951..39040Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:38951..39040TCONS_00049473-exon-scaffold_16-1575043694:38951..39040Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:39247..39331TCONS_00049473-exon-scaffold_16-1491911889:39247..39331Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:39247..39331TCONS_00049473-exon-scaffold_16-1510915933:39247..39331Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:39247..39331TCONS_00049473-exon-scaffold_16-1575043694:39247..39331Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:39754..39815TCONS_00049473-exon-scaffold_16-1491911889:39754..39815Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:39754..39815TCONS_00049473-exon-scaffold_16-1510915933:39754..39815Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:39754..39815TCONS_00049473-exon-scaffold_16-1575043694:39754..39815Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:40218..40265TCONS_00049473-exon-scaffold_16-1491911889:40218..40265Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:40218..40265TCONS_00049473-exon-scaffold_16-1510915933:40218..40265Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:40218..40265TCONS_00049473-exon-scaffold_16-1575043694:40218..40265Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:40937..41038TCONS_00049473-exon-scaffold_16-1491911889:40937..41038Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:40937..41038TCONS_00049473-exon-scaffold_16-1510915933:40937..41038Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:40937..41038TCONS_00049473-exon-scaffold_16-1575043694:40937..41038Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:42375..42545TCONS_00049473-exon-scaffold_16-1491911889:42375..42545Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:42375..42545TCONS_00049473-exon-scaffold_16-1510915933:42375..42545Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:42375..42545TCONS_00049473-exon-scaffold_16-1575043694:42375..42545Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:42689..42758TCONS_00049473-exon-scaffold_16-1491911889:42689..42758Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:42689..42758TCONS_00049473-exon-scaffold_16-1510915933:42689..42758Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:42689..42758TCONS_00049473-exon-scaffold_16-1575043694:42689..42758Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:43162..43312TCONS_00049473-exon-scaffold_16-1491911889:43162..43312Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:43162..43312TCONS_00049473-exon-scaffold_16-1510915933:43162..43312Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:43162..43312TCONS_00049473-exon-scaffold_16-1575043694:43162..43312Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:43803..43865TCONS_00049473-exon-scaffold_16-1491911889:43803..43865Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:43803..43865TCONS_00049473-exon-scaffold_16-1510915933:43803..43865Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:43803..43865TCONS_00049473-exon-scaffold_16-1575043694:43803..43865Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:44319..44407TCONS_00049473-exon-scaffold_16-1491911889:44319..44407Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:44319..44407TCONS_00049473-exon-scaffold_16-1510915933:44319..44407Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:44319..44407TCONS_00049473-exon-scaffold_16-1575043694:44319..44407Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:45267..45348TCONS_00049473-exon-scaffold_16-1491911889:45267..45348Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:45267..45348TCONS_00049473-exon-scaffold_16-1510915933:45267..45348Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:45267..45348TCONS_00049473-exon-scaffold_16-1575043694:45267..45348Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:45790..45922TCONS_00049473-exon-scaffold_16-1491911889:45790..45922Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:45790..45922TCONS_00049473-exon-scaffold_16-1510915933:45790..45922Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:45790..45922TCONS_00049473-exon-scaffold_16-1575043694:45790..45922Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:46270..46382TCONS_00049473-exon-scaffold_16-1491911889:46270..46382Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:46270..46382TCONS_00049473-exon-scaffold_16-1510915933:46270..46382Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:46270..46382TCONS_00049473-exon-scaffold_16-1575043694:46270..46382Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:46781..46927TCONS_00049473-exon-scaffold_16-1491911889:46781..46927Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:46781..46927TCONS_00049473-exon-scaffold_16-1510915933:46781..46927Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:46781..46927TCONS_00049473-exon-scaffold_16-1575043694:46781..46927Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:47223..47310TCONS_00049473-exon-scaffold_16-1491911889:47223..47310Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:47223..47310TCONS_00049473-exon-scaffold_16-1510915933:47223..47310Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:47223..47310TCONS_00049473-exon-scaffold_16-1575043694:47223..47310Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:47600..47667TCONS_00049473-exon-scaffold_16-1491911889:47600..47667Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:47600..47667TCONS_00049473-exon-scaffold_16-1510915933:47600..47667Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:47600..47667TCONS_00049473-exon-scaffold_16-1575043694:47600..47667Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1491911889:47993..48122TCONS_00049473-exon-scaffold_16-1491911889:47993..48122Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1510915933:47993..48122TCONS_00049473-exon-scaffold_16-1510915933:47993..48122Clytia hemisphaericaexon
TCONS_00049473-exon-scaffold_16-1575043694:47993..48122TCONS_00049473-exon-scaffold_16-1575043694:47993..48122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:36781..48122 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.16777	3.34271	2.6341	2.96969	11.2156	1.83555	5.74049	10.4116	6.82598	6.87675	8.97733	7.1037	3.70613	2.45903	5.60713	6.99411	9.3374	9.04548	3.32924	3.95761	3.56544	5.67353	5.83287	9.75275	9.73	4.08029	3.43552	2.21822	4.42909	4.96143
Blast
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BLAST of TCONS_00049473 vs. Swiss-Prot (Human)
Match: SWT1 (Transcriptional protein SWT1 OS=Homo sapiens GN=SWT1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.342e-44
Identity = 130/455 (28.57%), Postives = 217/455 (47.69%), Query Frame = 3 
Query: 1446 LYIVLDTNILLAHLKFVSDLKDYPIPGIGTPILYIPWMVLQELDSLKDAVNRHHTQTDQSGAEKTYKLNILARKAIKFINTCLEADHPRVKGQTAIEASTPIDGFTEESNDDAIIHAALS-LKLRACHSNIVMFSNDRNLCNKAMVGGIKAFSQQNLMMGIRSLYQNGTV----AIRKENYQE----YYEAYKVQEIIAKERKQADELSCELQCMLREGLSQVIEHEMKEAYGPDMWLHIVKIQPPWTLQDVFTLLEKHWIAVFGHVIQRNRLKIVEELKKKFQDAEGIAGTLQVSHDLIEFSVRLFEAFSIRSSYNDMMTKCLAGCRVLLDKCNEYIQEKNGTVAHANPNQGKLHQTKENVSVEREEGEAIHTNT-------VKHGTVLDTFDDIWRTVTHYSALIFRSLDFPSQLVKELDPNEPKPDPKEANACLTVMTKCLLQLIRKIQDVV 2762
            L IV+DTNIL+ HLKFV  LK   +PG    +L IPW+V+QELD +K+       Q               A  A+ FIN  L+    ++ GQ+   AS    G ++E+NDD ++   L   +L  C S +++ ++DRNL NK ++ G+K+ S++ L   +  L  N  V     I K+  +       E+YK +   +      + +  +L+  L  GLS ++E EMK A+G ++W+ I+ ++PPWTL  +    +KHW+AVFG V+++N L  +E L K  + A        V   L++ S  L  AFS RS+Y+ ++ +  A    LL    E       T    N ++  + + +E  S++    + I   +        +H  +    + +W T+   S  +F+ L   S L             +EA  CL  +   +  ++  IQ ++
Sbjct:  388 LLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHK-------------AIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLSDENNDDRVLKCCLQHQELFPC-SFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLNTDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETEMKIAFG-NLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANKAVDFTTVKF-LLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEV-----KTKLKPNSSENTVTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSNSALT-----TSNIASFEEAFICLQKLMAAVRDILEGIQRIL 816
The following BLAST results are available for this feature:
BLAST of TCONS_00049473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SWT15.342e-4428.57Transcriptional protein SWT1 OS=Homo sapiens GN=SW... [more]
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