|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049476 ID=TCONS_00049476|Name=TCONS_00049476|organism=Clytia hemisphaerica|type=transcript|length=987bp
GTTCAAGAAAATTTGGGAGCGATGGAAGAACTCAGTCGAAGAACTTTCAC
ACTTTTTCACTGTCTCATCTCATCGAGGTCTGTCTGTCTcGGACAGTCAA
ATATCTTGGTGTCATTATAAACAAACGCTTGAAATGGAATACACACATTG
ATATGGTTTGCAAAAAAGGTACATAAACACGAAATTTTCTACAGCGAAAT
CTGAGAGGATGCACCAAAGCCACCAAAGCAAAAGCCTACAAACAAGACGT
ACATAAACCCAATCCTCTACTACGCATCTACTGTCTGGAACCCTTTCGGG
GAGAGCAATCAAGGACTGCGAGACCGAATTGAAATGATACAAAGGAAATC
TGCTCGCTTTGTTTATGCTGACTGGAACCGTCACTCCAGTCCAACGAGAA
TGATGAACGATCTTGAATGGAAAACCTTAGAAACTCAAAGGAAAATTCGC
AACCTTACAATGATGCACAACATCATTCACGGGGCAGTTGCAATTCCTGA
gactatattttcaaacaggGCTAGGTTTTCTACATGTATTCGATTCAAGC
AAATGCATGGGATGAGTGCTTGCCTACAAAAACTCATTTGCTCCATCAAC
AGCTAAACTCTGGAATGATCTCCCTGGTGGTCTTACGACAATTAAAGAAC
ATTcatcttttaaaaacaaacttgaagACCACTTTGGATAGGtcattatt
attttatatttaattttcatcccATTTTAATTGTATATCTTTAAtcgtaa
aaataattatttaattttatattatttatttaaatatttgtAATATTTAG
TAGTCTGCTACCACATTATGCCTGCTCCTATGCTTACCCCAGCACTGAGG
CTACTTCAAGTTACATTCTTTCTGCTAGCTTTAATACCTCTTTagcagtg
aggctggaacttcgatttttgaggattacgattttaccagctttttagca
atttttgccttgctaacccaaatctcgcaacctcttt Run BLAST on NCBI transcript from alignment at scaffold_16:109818..110920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049476 ID=TCONS_00049476|Name=TCONS_00049476|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_16:109818..110920+ (Clytia hemisphaerica)
GTTCAAGAAAATTTGGGAGCGATGGAAGAACTCAGTCGAAGAACTTTCAC
ACTTTTTCACTGTCTCATCTCATCGAGGTCTGTCTGTCTGTaggttatat
ttttttctaaataatgGGTATAGCAAAAGCTCTTCCCCTTGTTACTTTCC
CTTGGATTTCAGACACGAGTCAAGGGCCTctgaaactgatttttttttca
tatagcGGACAGTCAAATATCTTGGTGTCATTATAAACAAACGCTTGAAA
TGGAATACACACATTGATATGGTTTGCAAAAAAGGTACATAAACACGAAA
TTTTCTACAGCGAAATCTGAGAGGATGCACCAAAGCCACCAAAGCAAAAG
CCTACAAACAAGACGTACATAAACCCAATCCTCTACTACGCATCTACTGT
CTGGAACCCTTTCGGGGAGAGCAATCAAGGACTGCGAGACCGAATTGAAA
TGATACAAAGGAAATCTGCTCGCTTTGTTTATGCTGACTGGAACCGTCAC
TCCAGTCCAACGAGAATGATGAACGATCTTGAATGGAAAACCTTAGAAAC
TCAAAGGAAAATTCGCAACCTTACAATGATGCACAACATCATTCACGGGG
CAGTTGCAATTCCTGAgactatattttcaaacaggGCTAGGTTTTCTACA
TGTATTCGATTCAAGCAAATGCATGGGATGAGTGCTTGCCTACAAAAACT
CATTTGCTCCATCAACAGCTAAACTCTGGAATGATCTCCCTGGTGGTCTT
ACGACAATTAAAGAACATTcatcttttaaaaacaaacttgaagACCACTT
TGGATAGGtcattattattttatatttaattttcatcccATTTTAATTGT
ATATCTTTAAtcgtaaaaataattatttaattttatattatttatttaaa
tatttgtAATATTTAGTAGTCTGCTACCACATTATGCCTGCTCCTATGCT
TACCCCAGCACTGAGGCTACTTCAAGTTACATTCTTTCTGCTAGCTTTAA
TACCTCTTTagcagtgaggctggaacttcgatttttgaggattacgattt
taccagctttttagcaatttttgccttgctaacccaaatctcgcaacctc
ttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049476-exon-scaffold_16-1491911889:109818..109906 | TCONS_00049476-exon-scaffold_16-1491911889:109818..109906 | Clytia hemisphaerica | exon |
| TCONS_00049476-exon-scaffold_16-1510915933:109818..109906 | TCONS_00049476-exon-scaffold_16-1510915933:109818..109906 | Clytia hemisphaerica | exon |
| TCONS_00049476-exon-scaffold_16-1575043694:109818..109906 | TCONS_00049476-exon-scaffold_16-1575043694:109818..109906 | Clytia hemisphaerica | exon |
| TCONS_00049476-exon-scaffold_16-1491911889:110023..110920 | TCONS_00049476-exon-scaffold_16-1491911889:110023..110920 | Clytia hemisphaerica | exon |
| TCONS_00049476-exon-scaffold_16-1510915933:110023..110920 | TCONS_00049476-exon-scaffold_16-1510915933:110023..110920 | Clytia hemisphaerica | exon |
| TCONS_00049476-exon-scaffold_16-1575043694:110023..110920 | TCONS_00049476-exon-scaffold_16-1575043694:110023..110920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:109818..110920 + |
Blast
The following BLAST results are available for this feature:
|
