TCONS_00049497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049497
Unique NameTCONS_00049497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049497 ID=TCONS_00049497|Name=TCONS_00049497|organism=Clytia hemisphaerica|type=transcript|length=3201bp
tgagttttgtcaagaaaagaacaaaatctCCAAAGCCAACCAACAACCGT
GATGAGTCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACC
CTTATCGTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCC
CTTATGTTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTT
ATCATATCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGT
GCCTGCACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCAC
GTTTCCTAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATG
TGCATTGGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGC
TGGTGAATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTG
GTAAGATTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTT
ACTGGATCTGGTATTTTTACAAGGATCGTATCATTGCCTTTCATTGCCTA
CAATTTAATTTTCCATTTACCGCGACAATTCAAAAGAGTTTTTGGTGTCA
AATTTTGTGCTGGTTGGTCAGGGTCCAAGAACGAGCCTGTGGATGCAGAT
TCTTTCATTTGGATTATGCCCAGTCTAATTGCACAGCAGATTTTGTTCAC
CGTTTTCTTGGTGTACATGAATCAAAATGGGTTGGATTTTGTATGATGCA
TTATCATCTTCACTTTATCTTCTTCACATATCTGACACTCTTCACCAGAG
CTGAGACAACCTGGCATCAACCTAACATCTTATTCGTCTTAGTGGATGAT
TTGGGTATTGCCGACATCGGTTGCTATGGTAAcaagacaatcaaaacacc
aaaTATCGACTCGTTATGTACTAATGGTGTTAAGTTCACACACGCCTTAG
CTGCGGCTCCAGTATGTACACCTAGTCGTGCTGCGATTCTAACAGGCCGA
TACCCCGTGCGCCTTGGATTAGAACCGCGTGGAGTAGGAGAAGCACGTGT
CATCAAATATACAACTGCTGAAGGAGGACTTCCACCGAACGAGACTACGT
TTGCAGAAGTATTGAAACGAAACGGTTATATAAACGGATTTTTCGGGAAA
TGGCACCTAGGCTTGCATTGCGGTAAGAAAAACACACACAAAAAGAATAA
GGCAAACATTCCTTCTTTTAAACACAAggatgaaaatttttgtcatcaTC
CGTTGAGAAAAGGTTTTGATTATTATTACGGGATGCCGTTAACTAACGCA
ATGGAATGCGGGAACTCGCCGCTGTACGGATTACATGGCGAAATGTATCA
CATCCAAAATGTGGTAAATTTTTATCGCTACTTTGGTTCTTTACTTGCTT
TTGTTGTGAGTTACTTGGTATTTAAACCGTTTCGCAGAGCTGTGTTTATT
TTATTGTTAACGGTTGCAATCTTATGGTACAGCTATCATgtcttttactt
ttatttgatTCGTCAATTCAACTGCATTGTCATGCGAAATAACCAAGTTG
TCGAGCAAACTGTAAATTTAGAGAGTATTACAGCTAACTTGGTGAACGAG
ACTAAGTCTTTTATCAACAAGAATCGAGATAAAAGATTCATGGCTTATGT
TTCGTATCATAAAATGCACGTGGCTTTAGCTACAGCGAAACGGTTTGTCG
GCCGGAGTCAACATGGTTCGTACGGGGCTTCAATGCTTGAACTAGACTGG
AGTGTTGGTCAGATTTTGAGTGAAATCCACAGTCTAAATCTTACTGAAAA
GACACTGGTTATATTCGCGTCTGATCATGGGCCTGCGACAATTATGTATA
ATTTGATTAGTGGTGAGCGTCAAGGAGGTTGGCCTGGAATCTATCGTGGC
GGGAAAGCTACCAGTTTTGAAGGTGGTATAAGAGTACCTTTAATGTTCCA
GTGGCCTGGGAAATTCAAACGAGGTTTGGTGGTGAACCAACCTGTTAGTT
TATTGGATATCTTTCCAACTATTTTATCGCTCGTGCGAGTTTCCTATGAT
AGAGCCGTTGAGTTTCCCGATAATAAGTTGGATGgaaaagatatttccaa
gcTACTTTTTGGACGGAAAAATCACGTGAATCGAGAATTCTTTCACTATT
GTGGAAGTAACATTCATGCGGTCACtttagaagaaaaagaaatcggAAAA
GTCTGGAAAATACATTTTATTATTCACAAGGATCTTTCAAGGCCATATCA
ATGTTATGGAGATACGGTCCAGAAATTACGCAAACCTCTTATCTTCGACC
TTGTAACTGGACCCAGCGAAGACTCACCGTTGTTGGCATCGGACCCGAAT
TTCGAAAGAGTGTGGCATCTGGCAGCGAGTAAAGCATTTGAGTTTAATTC
AACTGTCGATTTCAATGTACCTAACCAATTATCGAAAGAAATGAATTCTT
TTTCATTGGATCAAACTCTATGCTGTGGTgattttccaaactgtttttGT
TGAATCATCAAATTTTGTAGAAAGTTGAATGTAACATGTAAaacttgatt
atttttttaaatctcccgtTCTTTATATCGAATTCTTCTTTGTTATCAGA
ATAGCCCTAAAGCCTACCAAAACATCGNCGTTGAGTTTCCCGATAATAAG
TTGGATGgaaaagatatttccaagcTACTTTTTGGACGGAAAAATCACGT
GAATCGAGAATTCTTTCACTATTGTGGAAGTAACATTCATGCGGTCACtt
tagaagaaaaagaaatcggAAAAGTCTGGAAAATACATTTCATTATTCAC
AAGGATCTTTCAAGGCCATATCAATGTTATGGAGATACGGTCCAGAAATT
ACGCAAACCTCTTATCTTCGACCTTGTAACTGGACCCAGCGAAGACTCAC
CGTTGTTGGCATCGGACCCGAATTTCGAAAGAGTGTGGCATCTGGCGGCG
AGTAAAGCATTTGAGTTTAATTCAACTGTCGATTTCAATGTACCTAACCA
ATTATCGAAAGAAATGAATTCTTTTTCATTGGATCAAACTCTATGCTGTG
GTgattttccaaactgtttttGTTGAATCATCAAATTTTGTAGAAAGTTG
AATGTAACATGTAAaacttgattatttttttaaatctcccgtTCTTTATA
TCGAATTCTTCTTTGTTATCAGAATAGCCCTAAAGCCTACCAAAACATCG
C
Run BLAST on NCBI

transcript from alignment at scaffold_16:88811..96912-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049497 ID=TCONS_00049497|Name=TCONS_00049497|organism=Clytia hemisphaerica|type=transcript|length=8102bp|location=Sequence derived from alignment at scaffold_16:88811..96912- (Clytia hemisphaerica)
TGAGTTTTGTCAAGAAAAGAACAAAATCTCCAAAGCCAACCAACAACCGT
GATGAGTCATCAGAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCACC
CTTATCGTGGTGGCGTATGGGTGGTATTTTATCCGCTCTGTCAATCATCC
CTTATGTTTACGTCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTT
ATCATATCTTTAAATCCATTGGTTCGTTATTTCTTTCCATCACAATATGT
GCCTGCACGCAATAGTTGTCCATATTGGATTTCACATCCTTGTTTAGCAC
GTTTCCTAGCAACCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATG
TGCATTGGTGTACCTTTTTGGAATGGACCAATGGGTTGTTTAACCATTGC
TGGTGAATCTATCTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGTTTG
GTAAGATTGAAGATTCAACTTGGGTTTTGGTTCAAATTGTGGCGCTCTTT
ACTGGATCTGGTATTTTTACAAGGTAACATTCTTTTAGGTTGTTGTTGGA
ATCTCAAATTGTTCTGATACGCCAGGGACTTGTCCCTTAAAAAGACAAGG
ATTTTTATATTCACTCCTATCAAAACATCATTCACTCGACTAAAAACATT
TTTGAACCATTCCCAGATAAGAAAAAAGGCAATATTTCTTCTACACAGGC
AAGATAATTGTTTTGTCGTATAAATATATCATTTTACATATAAAATTTCT
GGTCCTTTCCAACGATAGATACAAGGGGGGTTTTACAATTTCCTATTTTT
TCAGGATCGTATCATTGCCTTTCATTGCCTACTGTTTAATTTTCCATTTA
CCGCGACAATTCAAAAGAGTTTCTGGTGTCAAATTTTGTGCTGGTTGGTC
AGGGTCCAAGAACGAGCCTGTGGATGCAGATTCTTTCATTTGGATTATGC
CCAGTCTAATTGCACAGCAGATTTTTTTCACTGTCTTCTTGGTGTACATG
AATGAAAATGGGTTGGATTTTGTATGGTAAGTCATGGTATAAAGTTTCTT
TGTAAGAATGCATTTTCTTTTCTATTTCTTTCGTCTTTATTTTGGATGAT
CCGAATATTTGGGTTGCATTATTTTTATTTTTTTAATTTTGATTATGAGA
TAAAATCAAACTTGATAGTTTTCAACCCTGCTATACTTTAGTTTACCATA
CTTCACTTTAAAACTTCAGTTATGACATTGTCTCTGTATATTTTTACCAC
CCTGTGTCACAGACCCGTTTGGATCCCCGCCACACGGAAAAATTTTGCCA
AAATTTAGCCTCCGGTGGGAAAAACACCCTACAATTTCAGCCCCACTGGG
AAATTCACTTTCATTTCATCCCCGTTTGAAATTCAATTAAAAATTTGCAC
TTGAAAACCATCTCTCTGGAGCTGTGAGAAAGGGGTGTATCTCTGTGTCT
GTTGATTCTCTGTGACTGTACGGGCAGCATTATGTTTAGCTTAAATTAAA
AATGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGGTGGAGGATATATT
ATTTTTTTCATGAATTACCCCTGGACATTTTGATTTTTAACCCCCTGGAC
ACGGGTTATACCCCTGGACAAACATCAAATCCCGTGGACACAAAAAATTA
CCCCTGGACATTGCAATTTTTTGGTATTTTTTCAATACTCCTGGACAATT
CATCCTCCACCCCCCATGAATGGATTTTTTCTGGAAGAGCCCAATGTACA
CTTGCTACTTATATAATTGATCTCCAGGGGGGGAGGCATTTTTAAAGAAT
TCTGAAATCGATATTTATATAATTTTATAATCATGGACTAGAATATGCTA
TTATTATGTATATACAAAACACAATTAATATATGCACTTGAGTTTTGTTG
TTGTATTATTTCATATTGAATTTTTATGCGTCTTTTTGAAATTAATGGAT
TTTTTTATAGTGAATTTTTAAAGAGAATTTTATAGCTTTTATACCTTTTG
AACGGCTATTTTACTGCCGGCGCTTTTCCTTTTCCATGTTAGATGAGTTA
AACTTCTAAAACTTCCGAATGTAAAACTGGGAATCGGAGAAATGTTAATT
TTGCTAATTTTTACTCTCCTTTTTGTTTGGCTAACTCGAATTTTGGGTTC
TTTTCACGAGACTTATCATTTACCAATGGTCAAGGTACCTTTTATATTTG
ATTATGTTTCTTTAGGTAAAGCTAAAAGCGTAAACAAAAAATAAAATACA
CAGGTACTTTGAATTGCAAATTGAACTTTTGAAATTTTGAAACTTTTGAA
TTAAAACCAAGCAGATGTTGTTGATTTCATTCGGTAGAATATGATTGACC
AACTTGGTTGTGTAAAAAATTAACTCGAACATTTAAGGTGTACCTTAAAA
AACCGAGTTATGAAACTCGAAAATTTAAGGTGCACGTCATAAATAATCGA
GTTTCTTATACTGGAAAATTTAAGGTGCACCTAAAATGACCGAGTTAAAA
TTAACTCCGAAAATTATAAAGGTGCACCTTAAATAAACCGAGTTATGGCT
TCATAACTCGGGTTTTCATAACTCGATAATTATTACTGTTACTTCAAAAA
ATGTTTTTACAGTGCAAAGTTGTCATAATTGGTAACAATATTATGTATCT
ATTTTTTCAGAAAAATATCAATGAAAAAAGTTAAAAAATGAGTTCTGTCA
AGAAAAGAACAAAATCTCCAAAGCCAATCAACAACCATGATGAGTCATCA
GAAATCAATGTCAGCTCTTTCATTCCAAACCCTCCGCCCTTATCGTGGTG
GCGCATGGGTGGTATTTTATCCGCTCTGTCAATCATCCCTTATGTTTACG
TCATCCAGAAAAATACATTGAACTGGTGGCTTGTTGTTATCATATCTTTA
AATCCATTGGTTCGTTATTTCTTCCCATCACAATATGTGCCTGCACGCAA
TAGTCGTCCATATTGGATTTCACATCCTTGTTTAGCACGTTTCCTAGCAA
CCATTGGTGAACCTATTTTCTTATGGGCTGAAGCGATGTGCATTGGTGTA
CCTTTTTGGAATGGACCAATGGGTTGGTTAACCATTGCTGGTGAATCTAT
CTCATGGGTTCATTTGTTGTTACAAAGTGAGCTGATTGGTGTGATTGAAG
ATTCAACTTGGGTTTTGGTTCAAATTGCGGCACTCTTTACTGGATCTGGT
ATTTTTACAAGGTAATTTCTTTTAGATTGTTGTCAGAATCTCATATTGTT
CTGATACGCTGATACATGTCCATAAACCACTTCTGGACAAGAAAAGTGCT
AATTTCTTCCCTACACATACAAAACAACTGTTTTTGTCGTATAATCATAT
CCCTTTACTCAAAATTTCTGGTTCTTTCCAACCATAGATATAAGGGACAA
TAGTGTTTGAGATATTTGACCATTTGAAGTTTCCTCATCCGAAAAGAAGA
TACTAGTTGTTTTATCATTTCCTATTTTTTCAGGATCGTATCATTGCCTT
TCATTGCCTACAATTTAATTTTCCATTTACCGCGACAATTCAAAAGAGTT
TTTGGTGTCAAATTTTGTGCTGGTTGGTCAGGGTCCAAGAACGAGCCTGT
GGATGCAGATTCTTTCATTTGGATTATGCCCAGTCTAATTGCACAGCAGA
TTTTGTTCACCGTTTTCTTGGTGTACATGAATCAAAATGGGTTGGATTTT
GTATGGTAAGTCATGGTACAAAGTTTCTTTGTAAGAATGCATTTTCTTTT
GGTTTCTTTCGTTTTTTTCCGTCTTTATGTTAGCTGATGTATATCGTTTA
TATTATTTTAAGACTTTTAAATTTGATTACGAGATAATTCAAATTAGGCT
TTTCCAGAAATAGACCGTGCCCCCCCCCCCCCCTGTTGAGGATATCAGAT
ATCTAGGGGGTTAACGATTTCTGTTCAAAAGTAGATATCCAGGGGGGGTT
AAATATCTATAAGGGAGCCGATATCCAGGGGGTAAAGTGTCTTTTCAAGT
AAAAAATACGATATCCAGGGGTAAGCATCTTTATAAGAGAGGATATCCAG
GATGTTGAGCATATTGATAAGAGTGGATATCCAGGGGGTTCGATACTTCA
AAAAATCAATATCCTCAGCAGTGGGGGTAAAATATTTTTCTGGAAAAGCC
CATTTCAAGATTTTATACTTTACTACACTTTTAGTTTACCACACTTCACT
TTAAAACTTATGTTATGAGATATAATCTGACATTGTCTCTGTTCATCTTA
GCACCCATGTGTTGCAGACTCGATGGGATCTCTGTCCCACTCGAAATTTT
CAGTTTTCAGTGGGAAAAACATCCTACACTTTCAGCCCCACTGTGAAATT
GACTTTCGTTGCATCCCTATTTGAAATTCAATCAGAAATTTGCACTTGAA
AACCATCCTCATTGGATTTTTTTAACTTGGAAGAAAAGAATTTCTATCCC
CTTGGGGATTTCGATGGAAATTTTATTCCCCGCTGTGGGAAAAAGCTCCA
CTGGGGCTGCGAACAGGGTTAGTATCTTATTATTCGATTCTCTGTGACTG
TTGGGGTAAGCATTATGTAATTAATTTTCGGGGGGAAGAGGTATTGTTAA
AGAGCTCTGAAATTTATTTTTTATATTAATTTTTTATTAATTTTAGTCCA
TGAGACTAAAATTTGTTATTATCTATCTATGCAAAACACAATTAATATAT
GCACTTAGGTTATTATTATTCCATTATATCGATTTTTTATGCGTATTTTT
TGAAATTACAGGATGATTTTTATAGTGAATTTTTTTAAATAATTTTTTAG
CTTTTATACATTTTAAACGGTTATTTTTTTAGTGGCTGCTCTCTAGGCTG
CACATTATTGTCTCTGATATGTTTTGATATATGGGATGCTATCCTTGTAT
AAAATTCCCTTCTGAAAGGTACCCCGTGTCTTTGTGTTTTGAGTGGCTAG
AGGTTAATACAATCATTGCATTTCTAAACCTTTTTAAGAGAATTGAAACA
GGTCGCCCCAAGTTTGGGGGTAACTCTTGGACGGGAGTTTTATACACGAT
TATCATCCCTTATATAAAAACATATCAGAGGGGATACGTGCAGCCTAGCT
ACTTTCCGTTTCCATGTTGAATAAGTGAAACTTCTAAAACTTCTGAAGGT
TAAACTGGAAATTCAAGAAGATAGAATTCGGCTCCTTTTGCGTCGTTATT
GTATTTCTTTAAATGAAAAAAAACTGCAAAACTTGAATTCACGAAATTTT
GGGGTCTTGTAGGTTCTAACATCGCCTAACTTATCACTTATCCTTCTGGC
TTGGCATCTTGCAAATGGAATCATAAAGTTTCGCCCAACTTAATGATACT
GTTATTTTTTTAGGTAAGGAAAATAAGAGAAACAAAAAATACACATAGGT
ACTTTGGGATGGTAATTTAAGCCAGCATTTCGTGCCAAAGTAAGTTATTC
AATTTTTATTATAGACTCAAGTTAGGTTTTTTTGCGAACTTTGTGGAGGA
GGAGCTACTAATTTTGAAGTATCTGTTATTGAGAGAATGAAATTTGTGCT
TTTTCATAGAACCAATTTCATAAGAACACTCTAGGTTTGAAGATTAGTTC
TTACAAAAAGTACATAATCATTATCCTAATTCTCTTCTGTTTACAGATGC
ATTATCATCTTCACTTTATCTTCTTCACATATCTGACACTCTTCACCAGA
GCTGAGACAACCTGGCATCAACCTAACATCTTATTCGTCTTAGTGGATGA
TTTGGGTATTGCCGACATCGGTTGCTATGGTAACAAGACAATCAAAACAC
CAAATATCGACTCGTTATGTACTAATGGTGTTAAGTTCACACACGCCTTA
GCTGCGGCTCCAGTATGTACACCTAGTCGTGCTGCGATTCTAACAGGCCG
ATACCCCGTGCGCCTTGGATTAGAACCGCGTGGAGTAGGAGAAGCACGTG
TCATCAAATATACAACTGCTGAAGGAGGACTTCCACCGAACGAGACTACG
TTTGCAGAAGTATTGAAACGAAACGGTTATATAAACGGATTTTTCGGGAA
ATGGCACCTAGGCTTGCATTGCGGTAAGAAAAACACACACAAAAAGAATA
AGGCAAACATTCCTTCTTTTAAACACAAGGATGAAAATTTTTGTCATCAT
CCGTTGAGAAAAGGTTTTGATTATTATTACGGGATGCCGTTAACTAACGC
AATGGAATGCGGGAACTCGCCGCTGTACGGATTACATGGCGAAATGTATC
ACATCCAAAATGTGGTAAATTTTTATCGCTACTTTGGTTCTTTACTTGCT
TTTGTTGTGAGTTACTTGGTATTTAAACCGTTTCGCAGAGCTGTGTTTAT
TTTATTGTTAACGGTTGCAATCTTATGGTACAGCTATCATGTCTTTTACT
TTTATTTGATTCGTCAATTCAACTGCATTGTCATGCGAAATAACCAAGTT
GTCGAGCAAACTGTAAATTTAGAGAGTATTACAGCTAACTTGGTGAACGA
GACTAAGTCTTTTATCAACAAGAATCGAGATAAAAGATTCATGGCTTATG
TTTCGTATCATAAAATGCACGTGGCTTTAGCTACAGCGAAACGGTTTGTC
GGCCGGAGTCAACATGGTTCGTACGGGGCTTCAATGCTTGAACTAGACTG
GAGTGTTGGTCAGATTTTGAGTGAAATCCACAGTCTAAATCTTACTGAAA
AGACACTGGTTATATTCGCGTCTGATCATGGGCCTGCGACAATTATGTAT
AATTTGATTAGTGGTGAGCGTCAAGGAGGTTGGCCTGGAATCTATCGTGG
CGGGAAAGCTACCAGTTTTGAAGGTGGTATAAGAGTACCTTTAATGTTCC
AGTGGCCTGGGAAATTCAAACGAGGTTTGGTGGTGAACCAACCTGTTAGT
TTATTGGATATCTTTCCAACTATTTTATCGCTCGTGCGAGTTTCCTATGA
TAGAGCCGTTGAGTTTCCCGATAATAAGTTGGATGGAAAAGATATTTCCA
AGCTACTTTTTGGACGGAAAAATCACGTGAATCGAGAATTCTTTCACTAT
TGTGGAAGTAACATTCATGCGGTCACTTTAGAAGAAAAAGAAATCGGAAA
AGTCTGGAAAATACATTTTATTATTCACAAGGATCTTTCAAGGCCATATC
AATGTTATGGAGATACGGTCCAGAAATTACGCAAACCTCTTATCTTCGAC
CTTGTAACTGGACCCAGCGAAGACTCACCGTTGTTGGCATCGGACCCGAA
TTTCGAAAGAGTGTGGCATCTGGCAGCGAGTAAAGCATTTGAGTTTAATT
CAACTGTCGATTTCAATGTACCTAACCAATTATCGAAAGAAATGAATTCT
TTTTCATTGGATCAAACTCTATGCTGTGGTGATTTTCCAAACTGTTTTTG
TTGAATCATCAAATTTTGTAGAAAGTTGAATGTAACATGTAAAACTTGAT
TATTTTTTTAAATCTCCCGTTCTTTATATCGAATTCTTCTTTGTTATCAG
AATAGCCCTAAAGCCTACCAAAACATCGNCGTTGAGTTTCCCGATAATAA
GTTGGATGGAAAAGATATTTCCAAGCTACTTTTTGGACGGAAAAATCACG
TGAATCGAGAATTCTTTCACTATTGTGGAAGTAACATTCATGCGGTCACT
TTAGAAGAAAAAGAAATCGGAAAAGTCTGGAAAATACATTTCATTATTCA
CAAGGATCTTTCAAGGCCATATCAATGTTATGGAGATACGGTCCAGAAAT
TACGCAAACCTCTTATCTTCGACCTTGTAACTGGACCCAGCGAAGACTCA
CCGTTGTTGGCATCGGACCCGAATTTCGAAAGAGTGTGGCATCTGGCGGC
GAGTAAAGCATTTGAGTTTAATTCAACTGTCGATTTCAATGTACCTAACC
AATTATCGAAAGAAATGAATTCTTTTTCATTGGATCAAACTCTATGCTGT
GGTGATTTTCCAAACTGTTTTTGTTGAATCATCAAATTTTGTAGAAAGTT
GAATGTAACATGTAAAACTTGATTATTTTTTTAAATCTCCCGTTCTTTAT
ATCGAATTCTTCTTTGTTATCAGAATAGCCCTAAAGCCTACCAAAACATC
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031400XLOC_031400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049497-exon-scaffold_16-1575043694:96390..96912TCONS_00049497-exon-scaffold_16-1575043694:96390..96912Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1575043694:93208..93429TCONS_00049497-exon-scaffold_16-1575043694:93208..93429Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1575043694:88811..91266TCONS_00049497-exon-scaffold_16-1575043694:88811..91266Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1510915933:96390..96912TCONS_00049497-exon-scaffold_16-1510915933:96390..96912Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1510915933:93208..93429TCONS_00049497-exon-scaffold_16-1510915933:93208..93429Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1510915933:88811..91266TCONS_00049497-exon-scaffold_16-1510915933:88811..91266Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1491911889:96390..96912TCONS_00049497-exon-scaffold_16-1491911889:96390..96912Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1491911889:93208..93429TCONS_00049497-exon-scaffold_16-1491911889:93208..93429Clytia hemisphaericaexon
TCONS_00049497-exon-scaffold_16-1491911889:88811..91266TCONS_00049497-exon-scaffold_16-1491911889:88811..91266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:88811..96912 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55788e-06	0.51968	0	0	0.174769	0.134926	0.077527	0.0729165	0	0.0419242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00049497 vs. Swiss-Prot (Human)
Match: ARSE (Arylsulfatase E OS=Homo sapiens GN=ARSE PE=1 SV=2)

HSP 1 Score: 369.392 bits (947), Expect = 2.774e-114
Identity = 220/582 (37.80%), Postives = 320/582 (54.98%), Query Frame = 2 
Query:  818 QPNILFVLVDDLGIADIGCYGNKTIKTPNIDSLCTNGVKFTHALAAAPVCTPSRAAILTGRYPVRLGLEPRGVGEARVIKYTTAEGGLPPNETTFAEVLKRNGYINGFFGKWHLGLHCGKKNTHKKNKANIPSFKHKDENFCHHPLRKGFDYYYGMPLTNAMECGNSPLYGLHGEMYHIQNVVNFYRYFGSLLAFV-----VSYLVFKPFRRAVFILLLTVAILWYSYHVFYFYLIRQFNCIVMRNNQVVEQTVNLESITANLVNETKSFINKNRDKRFMAYVSYHKMHVALATAKRFVGRSQHGSYGASMLELDWSVGQILSEIHSLNLTEKTLVIFASDHGPATIMYNLISGERQGGW-PGIYRGGKATSFEGGIRVPLMFQWPGKFKRGLVVNQPVSLLDIFPTILSLV--RVSYDRAVEFPDNKLDGKDISKLLFGRKNHVNREFF-HYCGSNIHAVTLEEKEIGKVWKIHFIIHKDLSRPY-----------QCYGDTVQKLRKPLIFDLVTGPSEDSPLL-ASDPNFERVWHLAASKAFEFNSTVDFNVPNQLSKEMNSFSLDQTLCCGDFPNCFC 2500
            +PNIL ++ DDLGI DIGCYGN T++TPNID L  +GVK T  ++AA +CTPSRAA LTGRYPVR G+    +G  RV+++T A GGLP NETTFA++LK  GY  G  GKWHLGL+C   + H                 CHHPL  GFD++YGMP +   +C     + L  +  +++  +NF     +L+A       +++L+   +   ++  L  V +L  SY  F   LI   +C +MRN+ + EQ +  +  T  ++ E  SF+ +N+   F+ +VS+  +H+ L T + F+G+S HG YG ++ E+DW VG+IL  +    L+  TL+ F SDHG +  + N +   + GGW      G     +EGGIRVP +F+WPG    G V+ +P SL+D+FPT++ L    V  DR +       DG+D+  LL G   H + EF  HYC   +HA    +++ G +WK+HF+    + +P             C+G+ V     PL+FDL   PSE   L  AS+P F +V        +E   T+   VP QL +  N +      CCG FP C+C
Sbjct:   37 RPNILLLMADDLGIGDIGCYGNNTMRTPNIDRLAEDGVKLTQHISAASLCTPSRAAFLTGRYPVRSGMV-SSIG-YRVLQWTGASGGLPTNETTFAKILKEKGYATGLIGKWHLGLNCESASDH-----------------CHHPLHHGFDHFYGMPFSLMGDCAR---WELSEKRVNLEQKLNFLFQVLALVALTLVAGKLTHLIPVSWMPVIWSALSAVLLLASSY--FVGALIVHADCFLMRNHTITEQPMCFQRTTPLILQEVASFLKRNKHGPFLLFVSFLHVHIPLITMENFLGKSLHGLYGDNVEEMDWMVGRILDTLDVEGLSNSTLIYFTSDHGGS--LENQLGNTQYGGWNGIYKGGKGMGGWEGGIRVPGIFRWPGVLPAGRVIGEPTSLMDVFPTVVRLAGGEVPQDRVI-------DGQDLLPLLLGTAQHSDHEFLMHYCERFLHAARWHQRDRGTMWKVHFV--TPVFQPEGAGACYGRKVCPCFGEKVVHHDPPLLFDLSRDPSETHILTPASEPVFYQVMERVQQAVWEHQRTLS-PVPLQLDRLGNIWRPWLQPCCGPFPLCWC 582
The following BLAST results are available for this feature:
BLAST of TCONS_00049497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARSE2.774e-11437.80Arylsulfatase E OS=Homo sapiens GN=ARSE PE=1 SV=2[more]
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