TCONS_00049512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049512
Unique NameTCONS_00049512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049512 ID=TCONS_00049512|Name=TCONS_00049512|organism=Clytia hemisphaerica|type=transcript|length=323bp
caaaaagtaataaaaatgaattaataTGTCAGTCACTTTGTTCGTGTTGC
AAAATTGCTGGTTATGACTAGATGTGAAAACCAAAAGTTTAGAATATCTA
TAAAGACCTACGAaagatttctttgaaaatctAGCCTGAGCTCGAAAACA
TGTTTGATTGTTGTAGACAAGGTTCCTCATCACCTGATCAGGATTATCAT
CGGGGAAACCAGAGGAATCCAAACGGGAAAAGACGCCATCATGGTGAAGA
TTATGATCGTTTAGACAATGCACCTCATCACCACCACAACCGTAATCACC
AAGCACATCAACGACATAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00049512-protein

>TCONS_00049512-protein ID=TCONS_00049512-protein|Name=TCONS_00049512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
FYVVDVLGDYGCGGDEVHCLNDHNLHHDGVFSRLDSSGFPDDNPDQVMRN
LVYNNQTCFRAQARFSKKSFVGLYRYSKLLVFTSSHNQQFCNTNKVTDIL
IHFYYFL
Run BLAST on NCBI

transcript from alignment at scaffold_16:16719..17041

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049512 ID=TCONS_00049512|Name=TCONS_00049512|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_16:16719..17041 (Clytia hemisphaerica)
CTTTTTATGTCGTTGATGTGCTTGGTGATTACGGTTGTGGTGGTGATGAG
GTGCATTGTCTAAACGATCATAATCTTCACCATGATGGCGTCTTTTCCCG
TTTGGATTCCTCTGGTTTCCCCGATGATAATCCTGATCAGGTGATGAGGA
ACCTTGTCTACAACAATCAAACATGTTTTCGAGCTCAGGCTagattttca
aagaaatcttTCGTAGGTCTTTATAGATATTCTAAACTTTTGGTTTTCAC
ATCTAGTCATAACCAGCAATTTTGCAACACGAACAAAGTGACTGACAtat
taattcatttttattactttttg

Coding sequence (CDS) from alignment at scaffold_16:16719..17041

>TCONS_00049512 ID=TCONS_00049512|Name=TCONS_00049512|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_16:16719..17041 (Clytia hemisphaerica)
TTTTATGTCGTTGATGTGCTTGGTGATTACGGTTGTGGTGGTGATGAGGT
GCATTGTCTAAACGATCATAATCTTCACCATGATGGCGTCTTTTCCCGTT
TGGATTCCTCTGGTTTCCCCGATGATAATCCTGATCAGGTGATGAGGAAC
CTTGTCTACAACAATCAAACATGTTTTCGAGCTCAGGCTagattttcaaa
gaaatcttTCGTAGGTCTTTATAGATATTCTAAACTTTTGGTTTTCACAT
CTAGTCATAACCAGCAATTTTGCAACACGAACAAAGTGACTGACAtatta
attcatttttattactttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031407XLOC_031407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049512-exon-scaffold_16-1491911889:16719..17041TCONS_00049512-exon-scaffold_16-1491911889:16719..17041Clytia hemisphaericaexon
TCONS_00049512-exon-scaffold_16-1510915933:16719..17041TCONS_00049512-exon-scaffold_16-1510915933:16719..17041Clytia hemisphaericaexon
TCONS_00049512-exon-scaffold_16-1575043694:16719..17041TCONS_00049512-exon-scaffold_16-1575043694:16719..17041Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049512-proteinTCONS_00049512-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:16719..17041 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	10.1409	6.01798	0.1767	0	0.233604	0.718309	25.8019	35.6537	4.51304	4.84286	3.92476	10.7045	8.35258	8.05084	2.13347	0.910757	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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