TCONS_00049529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049529
Unique NameTCONS_00049529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049529 ID=TCONS_00049529|Name=TCONS_00049529|organism=Clytia hemisphaerica|type=transcript|length=3780bp
GTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACT
TTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCC
CCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCA
GTGCCCCAACAGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCT
CTCCCAAAAACTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCT
AGGCTACTAGGCAGGCATCAtacttaaaaatggtttttgaATTATACCCA
TCAAAACAGCAGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTA
TActataataaaattaaaaaaattaagaaagctTAAACAAATTTAACGTA
GTCataaattaaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGT
CAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAG
ATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAA
CGATCAGATCAAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAG
ACAAGACTGTAACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGA
TTTAGAATTATTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAG
ATTCATCAACAAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAAT
AAATTAATACTTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaac
atcaaatgactgaccaatcaaagcagaagaatttcaaaacaaatgaacta
cgcagctccattcacagctctactctacaatttttgttttgattttatat
actttgtattttaatgaccgaccaggtcattcatttgagggctatgcatg
ttatccTCCACTGATgaaagttacccgatctcacagtaACAATTAGCATG
GAGTAACATGGCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTT
TCCTTAAACATTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTA
CACACCAAAGAGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGA
TAGTACAGCAgtttcattttataatatctctTAAAAAGTTTTATCTGAAT
TCAATGTTGTTCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGT
ATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCT
GATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACA
TGTAATGGTTGAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTT
ACCATGTTTTTTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAA
ATTTTACAAACCTCCTGCTCTCTAACACTactaattttctatttttgagt
GTCTCTTCATATATTATATGTCAACTAACCAGTCGTTACACGATTTCACT
TAAAACATATTTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAA
AGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGT
CATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACT
CAGGCCACCATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTG
TGAAATATATCACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACT
TTGGTATATACAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGT
TACAGTATAGTAAAATTATAGTTATGATGGATGATAATAGAtatttgatt
ataaaaaattaGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAAT
TCCTAAACTTTGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaattt
ttttattcacaaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGC
TATCAGTATCACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTT
CAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATC
ATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATA
TGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTA
AACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTAC
CGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCA
TGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATAT
GCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGC
ATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGG
CAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATA
AAAGTTTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGC
CATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTA
CTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTC
AATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAAT
GCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAG
GGATGAACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaata
aaaagaaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTC
ACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaa
catccaaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAA
TCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGAC
CAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGC
AAGTTTTATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCA
ATAGCTATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACT
CTTGAAGATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTT
TATCagggggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTT
TTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAA
AATACAATGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccc
cAACATTCTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTC
ATAACATCAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTC
ACACCTTGTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTAT
AGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgacc
ATGTTGTGTtaattcaagttaaatctttggCTACCCtcctttttagacca
acccattATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACA
AATTCAATATTGTCATTATTGGAAATAGAGAGATGTCTTCAAATCTATAT
ATACAACTAACAGCAAATTTTGGGTTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_160:45511..49290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049529 ID=TCONS_00049529|Name=TCONS_00049529|organism=Clytia hemisphaerica|type=transcript|length=3780bp|location=Sequence derived from alignment at scaffold_160:45511..49290+ (Clytia hemisphaerica)
GTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACT
TTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCC
CCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCA
GTGCCCCAACAGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCT
CTCCCAAAAACTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCT
AGGCTACTAGGCAGGCATCAtacttaaaaatggtttttgaATTATACCCA
TCAAAACAGCAGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTA
TActataataaaattaaaaaaattaagaaagctTAAACAAATTTAACGTA
GTCataaattaaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGT
CAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAG
ATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAA
CGATCAGATCAAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAG
ACAAGACTGTAACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGA
TTTAGAATTATTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAG
ATTCATCAACAAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAAT
AAATTAATACTTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaac
atcaaatgactgaccaatcaaagcagaagaatttcaaaacaaatgaacta
cgcagctccattcacagctctactctacaatttttgttttgattttatat
actttgtattttaatgaccgaccaggtcattcatttgagggctatgcatg
ttatccTCCACTGATgaaagttacccgatctcacagtaACAATTAGCATG
GAGTAACATGGCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTT
TCCTTAAACATTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTA
CACACCAAAGAGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGA
TAGTACAGCAgtttcattttataatatctctTAAAAAGTTTTATCTGAAT
TCAATGTTGTTCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGT
ATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCT
GATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACA
TGTAATGGTTGAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTT
ACCATGTTTTTTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAA
ATTTTACAAACCTCCTGCTCTCTAACACTactaattttctatttttgagt
GTCTCTTCATATATTATATGTCAACTAACCAGTCGTTACACGATTTCACT
TAAAACATATTTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAA
AGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGT
CATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACT
CAGGCCACCATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTG
TGAAATATATCACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACT
TTGGTATATACAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGT
TACAGTATAGTAAAATTATAGTTATGATGGATGATAATAGAtatttgatt
ataaaaaattaGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAAT
TCCTAAACTTTGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaattt
ttttattcacaaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGC
TATCAGTATCACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTT
CAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATC
ATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATA
TGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTA
AACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTAC
CGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCA
TGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATAT
GCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGC
ATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGG
CAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATA
AAAGTTTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGC
CATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTA
CTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTC
AATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAAT
GCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAG
GGATGAACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaata
aaaagaaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTC
ACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaa
catccaaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAA
TCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGAC
CAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGC
AAGTTTTATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCA
ATAGCTATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACT
CTTGAAGATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTT
TATCagggggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTT
TTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAA
AATACAATGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccc
cAACATTCTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTC
ATAACATCAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTC
ACACCTTGTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTAT
AGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgacc
ATGTTGTGTtaattcaagttaaatctttggCTACCCtcctttttagacca
acccattATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACA
AATTCAATATTGTCATTATTGGAAATAGAGAGATGTCTTCAAATCTATAT
ATACAACTAACAGCAAATTTTGGGTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031419XLOC_031419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049529-exon-scaffold_160-1491911889:45511..49290TCONS_00049529-exon-scaffold_160-1491911889:45511..49290Clytia hemisphaericaexon
TCONS_00049529-exon-scaffold_160-1510915933:45511..49290TCONS_00049529-exon-scaffold_160-1510915933:45511..49290Clytia hemisphaericaexon
TCONS_00049529-exon-scaffold_160-1575043694:45511..49290TCONS_00049529-exon-scaffold_160-1575043694:45511..49290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:45511..49290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.36573e-05	0.675605	0.69968	0.00472663	0	0	0.137807	4.39275e-10	9.57619e-09	0.162622	2.92097e-05	0.153789	0.141203	0.0550804	0.00502722	0.570096	0.494234	2.23044e-10	0.657699	0.451371	0.755773	3.54497e-08	0	0.129002	0.0969859	0.194816	0.451752	0.563677	5.85295e-06	0.576917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top