TCONS_00049538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049538
Unique NameTCONS_00049538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049538 ID=TCONS_00049538|Name=TCONS_00049538|organism=Clytia hemisphaerica|type=transcript|length=1477bp
ctagtctgaatcgcagacctctacaaaaccgcaggtagtataggtctgct
taatgatcgaCAACCAGCTTTCCGATTCGGGTAATTTATCGTGCGTGTAT
TTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCGAGTTGA
AAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTATGAGTT
TTAAAACAAGGGAGCAAGTTacaaacaagatggcggagaacTCGCCTGTG
CCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCtgaaacagtcaaa
aaacacTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACACCATCA
ATCATACAGGggccaaatattttgtcaagGTGGCGGAGGAAACTTTTATA
TGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCTCAAGTT
GAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTCTGGTAT
GAATAATAGGCTATTATATCTCATTTAGTACTTTGTCCTGTTCTAAGTTT
ATTTTGCTGAAACTACTTTTTGACAACATGcttttggagtttttataaTA
TAGACTGGGGTGAGTGATAGAGCCCATAGAGACTCTCTCGGCTCTTGACT
TGATTATTAATCATCAATGACTTTATTCTTCTTTCATCATTTGGCCCAGG
CTCTCCCCTACCTGCCCCCACTCATACAATCAATAATTCCGTTAATCAAT
ATCAAATCCATCATTCCTTTATTTCTCAATTGGGGAAGTTATTGGTTTTA
TCACGTATATAAACAATAATCCTTAGCAGTTCTGTAATTTTACTTTGGCA
TAGTGTCTAGGAAAAATGTAGATAGCATATCGATACTTGCACATCATTGA
TTAACGACCAAACTCTCTCACTAATACTATCGatacatttttttcaagta
atttGATATCGATGGATTGGATATCGACTGATGATTGAGTATATTCCAGT
ATATTCCAGAATCTTGAATGATATTAATTGATCATTGATATACCTTTTGC
TAAGGATATCATGCTAGACAATTGAAATTTGATAATTATTATTCATTAAT
TCTTAGCCTATGTCATGTTATAGGCGTTTGTACCTACGTATATACGAGGG
ATGCGTATATGCGTCCTGAGAGAGAGTCTTCTTTGAGCTCAGATTCCAAG
CTATGTTTTGATACTGTAAGGATCAGGTTATGATTTTCGGGAAGAGAATA
AAAAGTACTTTCCGTATAGTGGTCATTCTAAGTGGTCATAGGGTTTGGAT
GtaaggaaatttcaaaacaaacgtcTGAAAACAGTAAAAAATGGTGGCAA
GGGAGGTTCTTCTATGTGGTTTAGTAAGGAATTGTCTTtctttaagtgtt
ttaaagtatttttctagtttttcttttgatatttcttgACAACAAAGGTA
TTTTCTAACTACCCTGTAAGTTTTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_160:59941..61417-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049538 ID=TCONS_00049538|Name=TCONS_00049538|organism=Clytia hemisphaerica|type=transcript|length=1477bp|location=Sequence derived from alignment at scaffold_160:59941..61417- (Clytia hemisphaerica)
CTAGTCTGAATCGCAGACCTCTACAAAACCGCAGGTAGTATAGGTCTGCT
TAATGATCGACAACCAGCTTTCCGATTCGGGTAATTTATCGTGCGTGTAT
TTCACGGAATGCTGGCGAGTTACAATAGAGAAGCGAGTTGTTCGAGTTGA
AAACGTTACGTCATCTTTTATTTGCTCAGTACGTTTGAGGACTATGAGTT
TTAAAACAAGGGAGCAAGTTACAAACAAGATGGCGGAGAACTCGCCTGTG
CCTGAGGTGGTTGAAGCAATAAAATGCTATTTATGTCTGAAACAGTCAAA
AAACACTTGGGACAGAAATAGATTCACTAAAAGCCTTCAAGACACCATCA
ATCATACAGGGGCCAAATATTTTGTCAAGGTGGCGGAGGAAACTTTTATA
TGCCAGTCATGTAAAAGAATGATGGAGAAACTCAAAAACCTTCTCAAGTT
GAGGGATCGTATTGTTGACATGGTCATGGATGAGCACAAGACTCTGGTAT
GAATAATAGGCTATTATATCTCATTTAGTACTTTGTCCTGTTCTAAGTTT
ATTTTGCTGAAACTACTTTTTGACAACATGCTTTTGGAGTTTTTATAATA
TAGACTGGGGTGAGTGATAGAGCCCATAGAGACTCTCTCGGCTCTTGACT
TGATTATTAATCATCAATGACTTTATTCTTCTTTCATCATTTGGCCCAGG
CTCTCCCCTACCTGCCCCCACTCATACAATCAATAATTCCGTTAATCAAT
ATCAAATCCATCATTCCTTTATTTCTCAATTGGGGAAGTTATTGGTTTTA
TCACGTATATAAACAATAATCCTTAGCAGTTCTGTAATTTTACTTTGGCA
TAGTGTCTAGGAAAAATGTAGATAGCATATCGATACTTGCACATCATTGA
TTAACGACCAAACTCTCTCACTAATACTATCGATACATTTTTTTCAAGTA
ATTTGATATCGATGGATTGGATATCGACTGATGATTGAGTATATTCCAGT
ATATTCCAGAATCTTGAATGATATTAATTGATCATTGATATACCTTTTGC
TAAGGATATCATGCTAGACAATTGAAATTTGATAATTATTATTCATTAAT
TCTTAGCCTATGTCATGTTATAGGCGTTTGTACCTACGTATATACGAGGG
ATGCGTATATGCGTCCTGAGAGAGAGTCTTCTTTGAGCTCAGATTCCAAG
CTATGTTTTGATACTGTAAGGATCAGGTTATGATTTTCGGGAAGAGAATA
AAAAGTACTTTCCGTATAGTGGTCATTCTAAGTGGTCATAGGGTTTGGAT
GTAAGGAAATTTCAAAACAAACGTCTGAAAACAGTAAAAAATGGTGGCAA
GGGAGGTTCTTCTATGTGGTTTAGTAAGGAATTGTCTTTCTTTAAGTGTT
TTAAAGTATTTTTCTAGTTTTTCTTTTGATATTTCTTGACAACAAAGGTA
TTTTCTAACTACCCTGTAAGTTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031423XLOC_031423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049538-exon-scaffold_160-1575043694:59941..61417TCONS_00049538-exon-scaffold_160-1575043694:59941..61417Clytia hemisphaericaexon
TCONS_00049538-exon-scaffold_160-1510915933:59941..61417TCONS_00049538-exon-scaffold_160-1510915933:59941..61417Clytia hemisphaericaexon
TCONS_00049538-exon-scaffold_160-1491911889:59941..61417TCONS_00049538-exon-scaffold_160-1491911889:59941..61417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:59941..61417 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.67009	0.66637	1.73726	1.19146	0.108795	0.372865	0.38751	0.609957	0.558384	0.673125	0.135936	0.794732	0.343058	0.477897	0.365909	0.454639	0.792437	0.359755	1.02149	1.71303	0.881143	0.897604	0.247955	0.287055	0.394214	0.659674	1.88129	1.74512	0.881826	0.818327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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