TCONS_00049542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049542
Unique NameTCONS_00049542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1049

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049542 ID=TCONS_00049542|Name=TCONS_00049542|organism=Clytia hemisphaerica|type=transcript|length=1049bp
CCGTGAAGTCAAAAGACTCGATGCTGTCGCTAGAAGTCCACTTTACACTC
ATCTGTCAGCCACATTGTCCGGTATCTCTACTATCCGGGCGTTTGGATTA
CAAGACCGGGTAACCAATGATTTCCATGATTGCACAAACTACCAAGCGGA
ATCGTGGTTGATGTTCATTTCATCTGTTCGGTGGTTCGGAATGAGATTGG
ATTTTATTTCACTTGTGTATTCAATGGTTGCAATATTCTCTCCCATTATT
TTACTTGATTTATCTGGAGAGATGGACCCGAATATTGCCAGTGTCAGCAT
AACATACGCATTGACTTTGAGTGGTTTATTCCAGTTCTGTGTTCGACAAA
GTGCTGAAGCTGAAAATCTTATGGTGTCGGTAGAACGATTAATGGAATAT
GCCGACATTGAAAATGAACCAGACAACGGTGATTTGAAGGCCGACAAGAA
TTGGCCGGAAAAAGGCCGGATTACCGCATCACACACGTCTTTCCGTTATC
ACCAATCTTTGGATAATGTGTTGAAAAAAATCTCCTTTGTTATCAACGGT
AGAGAAAAGATTGGAGTTGTTGGGCGTACGGGAGCTGGTAAAAGCACTCT
TTTGAATTTGTTGTTCCGAATGGGTGTTACAGATGGGCGTGTTATCATCG
ACGATGTAGATATATCACGATTAAAATTGAAAGACCTTCGAAGTTCACTC
TCTATTATCCCACAGGATCCGGTCTTGTTCAATGGTACATTGCGTAAAAA
TTTGGACCCTTTCTCCAAGTACACAGATGATCAAATATGGCAAGCTTTGA
CTGAGGTTCAACTCTCTGAGACAGTCGGTGATCTTCCAAACAAATTGGAA
ACTGAAGTTGCGGAATCAGGTTCAAACTTCAGCGTGGGTGAAAGACAATT
ATTGTGCTTAGCCCGTGCTCTGTTGAAACGAAACAAAATCTTGGTTATTG
ATGAGGCTACAGCCAATGTTGATTTCGAAACCGATTCTTTGATTCAGGAA
ACGATTCGTATGAAATTCCAAGATTGTACAGTATTAACCATCGCTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_160:72439..87709-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049542 ID=TCONS_00049542|Name=TCONS_00049542|organism=Clytia hemisphaerica|type=transcript|length=15271bp|location=Sequence derived from alignment at scaffold_160:72439..87709- (Clytia hemisphaerica)
CCGTGAAGTCAAAAGACTCGATGCTGTCGGTAAGTTTCCCCGATTTCCCG
ATAATGCTTGTTTTATTTCCCTCTGTTTTTAAATAAGCTGAGAACGTTTA
GTATGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGTCGGTAAGTTT
CCCCGATTTCCCGATAATGCTTGTTTTATTTCCCTCTGTTTTTAAATAAA
CTGAGAACGTTTAGTATGAATACCGGCCGTGAAGTCAAAAGACTCGATGC
TGTCGGTAAGTTTCCCCGATTTCCTGATTTTGATTTTTTATTTTCCAGCG
TTATTTTTTAAATCTGAGAACCTTCTGCTTAGTGCAAAGGCAGAGCTTTC
GGTCACGGTCTGCAAGGTCGAGGGTTAAATCCTATGTCGGGTTATATCAG
AGACTTCGTATTTTGTTTACAAATTAGCACTTGATGTATCTCTGCTTGAT
CATCGGCAATTAAAGAGATGGATCAAGGGTAAGTTGATCAATCCAGTGAG
CCCTCCCTTATCAAGATAGCAATCGAAAGATGAGCCTTCAAGTTGCCTCT
GACTGTGGTCACAGACTTACTTTTTTTCCCAAAATCTCGGCTATTGCTAG
TTTAATTCCAGATTTCTCTGAAAGTAAGCAAATTTTCCTCTCTCCCTGTT
TAGTACACTAGCCTGATAAAATCCAGATTTTCGTCCCGAAAACGCATGAC
GTTATAGTTTAACATTGCATAAATGAAACGAATAAATCTCATCTCCCTTA
ATACTCTTAGTAGCAGTAAGTTTGCGACCGCAGTCGAGGGCGACCCGCAG
GCTCCCTTGTCGTATAGCTGTCCACCTTCCCTGGATTTCTCCACTTACCC
TTGATCCGACTCTTTAGTTGCTGAGCATCAAGCAGAGAGGCATCAAGTAC
CATTTTGGGAATCTTTGGTATGACCCAGCTGGGGTTCGAACCCGCAACCT
TGCGCACCGTAGCTGGATGCTCTACCTTCATGCTATGGTCGATTAATACT
CTTACTCTTTTAGCTAGAAGTCCACTTTACACTCATCTGTCAGCCACATT
GTCCGGTATCTCTACTATCCGGGCGTTTGGATTACAAGACCGGGTAACCA
ATGATTTCCATGATTGCACAAACTACCAAGCGGAATCGTGGTTGATGTTC
ATTTCATCTGTTCGGTGGTTCGGAATGAGATTGGATTTTATTTCACTTGT
GTATTCAATGGTTGCAATATTCTCTCCCATTATTTTACTTGATTTATCTG
GAGGTAAGAATCAAATTCATATGTCGTCTATTTATTTTCGAAAAGTGTAA
ATTTAGAAAGAGCCTAAGATATTTTAAAGAAAAAACCTTCATTACATAAG
CAAAAAAACCTGCTTTGAGGCCTAAAACGTTTCGAATTTGGAAAATGCAT
GAAATGGCTAGAATGGATTTAACGGGGATATGATTCGGCGAATGTCGACA
GAAGTAATTTTTGGCGGTAACATTTTTTTTCCGCTAAAATCTTTGTTTTA
AGTTACTCAAAACAAACAAGCTGAAGCTTGAACACGTAAATCGTTATATA
CAAATTGTACGAATTACAAGTAGTCTCCTTAAATTGTCTTTAACAGATAT
TTTCTTTTCAAAATAAAACGCACTGATCTATAATCATACTCTCCCTTACA
TTCTAGAGATGGACCCGAATATTGCCAGTGTCAGCATAACATACGCATTG
ACTTTGAGTGGTTTATTCCAGTTCTGTGTTCGACAAAGTGCTGAAGCTGA
AAATCTTGTAAGTTTTTGTCCTATTCTGTTGTTTTTTTTATCATTTACAT
TTTCTATTTTTATCACTTTTAACGTGCGAACTCTTACTTTAACCAGTCGC
AAACAGGGAACAACTCTCCTGCTTTTTCAGATATATTTAGTCTTCAAGAA
CACAGAACATTTCATCCTTAGGTTAACCTTTAACATACTAATATTGGTAG
AAATAAACTTAACATCATTGTGCAATTACAATATCAGAGTCTAGCGTATT
CGAACTTTTATTAAATCGAATCTTTCTATGATTCGAACTAAAATATTCGT
CTCGGCAGCTGAAAGTCTAATTCGATTTTCAATGGACCAAAAATCTTCTT
CGAATAAAAGAACAGTTCGAAATACAGAAAGAGTCGAACAAAGAAAGATT
TGAATTACAGAGGTTTCGAATTGAGAGAGAGTCACCCATATAATCTCAAT
GAACAAGATTCAATTTGGATTTTTTTAATCGAGATTTTTCTATCTCTAGA
TGGTGTCGGTAGAACGATTAATGGAATATGCCGACATTGAAAATGAACCA
GACAACGGTGATTTGAAGGCCGACAAGAATTGGCCGGAAAAAGGCCGGAT
TACCGCATCACACACGTCTTTCCGTTATCACCAATCTTTGGATAATGTGT
TGAAAAAAATCTCCTTTGTTATCAACGGTAGAGAAAAGGTAAGACCACGT
GACCCGGCAAATTTCCAGGATTTGGAGCTGCTACCGTTTTTAATCAAAAG
ATTGGGTTTTAGAATGTGCCTTAGGCTCGAAAAAAGCAGACAGGAGGTCT
GGGGCCTTGTAAACAGCCCAACCAACTGGTCCAGGACAGTCCTGGTGTGG
TCTATGGGGCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TGCGGAATTAAGTGCTATAATATCAAATATTTGAAGACATTTTTCACTAA
TTTACCTTTTTCCATAGCTAATTTTATTTTTCATAAAGATTGAGTTCCCA
AACTCAATTAAAGATTCAGCTTCTGCTAGCGTTATCCGGTAGCAGAAAAC
CCCTGGAAATATGCCTGGTGACTTGAAATAAAGCTGTTCTATTGGTTGAT
TTTCTGACTGGCGTCAACGGTAGAGAAAAAGAGCCGATAGTAAGTTTAAC
AGTCTAATATTCCTTCATCGCCGTATTCTTACCGAAATAAAGTTTTATTC
CACGCTTCTAGATTGGAGTTGTTGGGCGTACGGGAGCTGGTAAAAGCACT
CTTTTGAATTTGTTGTTCCGAATGGGTGTTACAGATGGGCGTGTTATCAT
CGACGATGTAGATATATCACGATTAAAATTGAAAGACCTTCGAAGTTCAC
TCTCTATTATCCCACAGGTGTGTAAAGTTATTGTTTACGCTTGTTAATTT
TTGGAAAATTTTTCCAACCAACCCGGGGGGGGGTTGTTTAGTAATTTTTA
AAAATATTTTCAGCTGTCAAAGGGAAGGCCCCTTATTTTGGTCTAAATAG
CCTCATTTCAGCCTATATTTATCTTATTTTTGGGTTTTCAAAAGTACAAT
TTCCAACCCCCGGCAATTAGGTCCCCTCCCCGTTTATTGAAATCTCGAAA
AATTTCCAACCCCCCCCCCCCGTTTATTTGGAACCTAAGAGTACATTATG
AGTCTGGAATAGGATACAAGTTTATTGAATCTTGATTCTGGGAAATGCGG
GATGTACAGTTGACGCTCTCATAAACGATGCTCTACCATTCAAAACGCTC
CCTTATTCGAAGAAAATCCAATTCGCCTTGAAAATCAAATTAGTGATCGT
CAACTGTAGTGATCATCGTGTTGCATGGCACACAACGGTTTTTTTCGACG
TTTATCTAACGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAACA
ATGCTGTGTGCCAGCTGGTTGTGTTGCATGGAAGCCTTTATCAAATTATG
ATTATTTATGATATTCTTTACCATTAAATGTTTTTTATAACAACATCCAA
AAAATTTTGAAGCCTTTGGATGTTCTTAAAAAACTAATTTTCTTAACATG
TTCTTATTCTCACCATTTTGTGGGTATTTTTGACCATTTTCCTAAGAAAT
TTGGCTTTTCAAGGTCCACAAGGTCTTAAAATGTTCTTGAACTTGTTCTC
AATGTTTTAGCCATCAAAGCCTTATGTTCTTATAATTTTATTCTTATAAA
AACTATTTCATATTCGTCAGGATCCGGTCTTGTTCAATGGTACATTGCGT
AAAAATTTGGACCCTTTCTCCAAGTACACAGATGATCAAATATGGCAAGC
TTTGACTGAGGTAGGTTTCAGGTTTTTATCTACTACAATACACCTATCTA
ACCTTTAAAATGTGAGTAGACTGGGTTCGAGGTTACCAGGAAGATATATG
ACCACAAATATATTTTATAAAACACTAGATAGAGCTTTTCCTATCCTATT
TGAAGCAAAATAATCCGCCATCTTGAATGAAGTGACGTCATAATTTCGCT
TGTGTGATCCTTGAAATTTTGAAGTCATTGCTATGTCCAAAAAGTTTCAA
CAGCGAAAAACCAAGGCTACTACTGTGATCTACTTTCAGCAAAGATGGCG
TACTATTTTGCTTCACCTGTCTTGGCTTGGAAAAGATAGAGCAGCTCTAT
TTAGTGTTTCATATAAGATATCTGTGGGTATGACGTCTGAATGTCTGAAG
TCGTTCCATTTTCATCCTTAAATACAAAAAAAAAAGAAATCTGACGTCAT
TTCCTTGTATATCAATTACCTTTAAAGCTGACCGCGCCGCTAAGAGTTGA
TAGGTGTAAAGACCTTTTCATAAATTATTTTGACTGACTCTTTTTCGAAA
AATTACCAATTTGATTAACCCTTTCCGGACGCACGGGCCACTGATGGGTG
GCCCATGAATCGTGTTCCTATATGACGGACGGGCCACCGGGTGGCCCATA
GCTTTGTAAAAGATTTTTTTTCGCGCCAAAATACAATAACATGGTTTTGA
ATAATGATTTTAAGATAAATTTCCCGTAACCTGCAAAAACCGCTTTTTCG
ATATCTTGTTTACAACTAGAATTATAAATTTTCAATGTTTGTTGTAAATT
TACTCAGGCTAAATCTGTAAGGGAAAAATTGCTCAAAAATTTGGACAAAA
AATCACTTTACTCAGATTCTAAATCATATTCAAAGTTCAAGACGTAAAGC
ATCAAATGCCTTTTACTCTATTTCTTTATTCAAAGTCAAAAATTTTGCTG
CTCCGAAAAATCGGTCACCTGACCAGGTGTCAGCCATATTTCAAAATTTT
TTTTTGGTATTTCAAAACCCATATTACATGTGAAAAAATGAGGTTTTACT
TTTCGTGATATCTTTTATCAATCACTTTCTATTGCAATTTTAGTGAAGCC
AGTCAAAAATCAAATTTTTGTTCGCGTCGTATAGCCGTGAAATCATGCGT
CTGGAAAGGGTTAAACCCCTTGAGTCGTCTTCAAGTGTTACTTTTATAAA
TAGAGTACTGTAGACTGAACTTCTCTTGGAATCAATTATGATAGCAATTA
TCAGAAAGAGGTAAACGTTGCTCGTGACATAGTTTGTACAAAGCTCTCTT
CACTGATGAGGTTAGGATTTTTTTTTTCATCATAAGAACCGGCTTCCCCA
AAATAAAATAGGGTTTTTCCGCCTGAAAACAAAATGTTAAAAACAGTTTT
TAAGCAAATGAAAAGTTCTAATAATAAGTTGATTTTTAGAAAATAAGAAA
TGTTACGTCAACATAAGAAAAATGTTGGGGACGAAAAGTGGGATTTATCG
GGTATTACGAATCATAATAGCGGTTACAATGAAGCTTTGAGCTGCTTTGA
GCGACACGCAAGAAAACTTGAATACCCAGCTAAAAGGTTTACCATCCCAT
GAATCTAAAGAATTAACGGTTAAACTATTATATTATTAAATTAACGGAAT
TCGCTTTTCGGTCTATATAAGGTCTTCAGCAAAATAATGAGATAATTAAT
TCGATTTACATTTTCATTATCATTCTATGAAATAAACATTTGTCAGGTTG
AAGAAATTATTTAGTTATTTATCATCAATAAAGTCAATAGTTTCTCTACC
TTACTCAGGGAACAATTTCGGGTAATTAGACGAATTGCCTCACAAATTTG
TCAAATGCGCCAAAATCTCTTTCCACTAATTCGAATTTTTTGGTCATTCG
CCAAAATTAATTCTCACTAAATTTAACAAAGTAACTTGGCATTCTTTCCC
TTAAAATATCTTTTCTAATAATTAATATATTTTGATCTCGTCTCTTTGCA
GTTTGAAGAATATAAAATGGGAGCCATTAGTAAATCGAGCTCCAACTTTC
ATAACTTTTTACCGTCCTCAACACGGTTAGCTTCAAATGGAATAATCAGA
AACCCTCACAAAACTATCATTAAAAAAATCACTCCATTTCACAATAAACA
CTACAATTTATCATAGTTTCATCCTCTTGTTTTTAATGAGCGTCGATACT
CAATAGGAAATCTCGCAAACTTAAGCCTTATTTCTAGTTTAGTATAGTTT
TTCAATGGAGTTCAAATTTCAGGGTATTCTTTTTAACGGGGACCATTTCT
TAGTCAATTTTTCCATTGGGTAGAGGGTCACAATGTGTCATACTTCTCAC
AGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGATGGGTGAC
ATTGAGAATTGCTGTATCACATCTACTGCAACTATAATGGCGGATTCCTT
GATCTTGGGTGTTGCACCCGGCTTGATCTCGCGCATTGCATCTTTGACAT
CTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACGGCGATAC
TCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACATTGGGGCATA
CTTCTCACAGACGCCTCCTAAATGCCCGTGAGCTTGAGATGGAACGGAGA
TGGGTGACATTGAGAATTGCTGTGTCACATCTACTGCAACCATAATGGCG
GATTCCTTGATCTTGGGTGGTGCACCCGGGATGATATCGGGCATTGCATC
TTTGACATCTGTTCCGCCATTGGGAGNCAGACGCCTCCTAAACGCCCGTG
GGCTTGAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTATCACAT
CTACCGCAACTATAATGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGC
TTGATATCGGGCATTGCATCTTTGACATCTGTACCGCCATCGGGAGGATA
CATTTCAGCTTGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGT
CACAATGTGTCATACTTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTG
AGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTATCACATCTACCG
CAACTATAATGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATA
TCGGGCATTGCATCTTTGACATCTGTACCGCCATCGGGAGGATACATTTC
AGCTTGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACAAT
GTGTCATACTTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGG
AACGGAGATGGGTGACATTGAGAATTGCTGTATCACATCTACCGCAACTA
TAATGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATATCGGGC
ATTGCATCTTTGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTG
AGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACAATGTGTCA
TACTTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGA
GATGGGTGACATTGAGAATTGCTGTATCACATCTACTGCAACTATAATGG
CGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATCTCGCGCATTGCA
TCTTTGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTT
ACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACA
TTGGGGCATACTTCTCACAGACGCCTCCTAAATGCCCGTGAGCTTGAGAT
GGAACGGAGATGGGTGACATTGAGAATTGCTGTGTCACATCTACTGCAAC
CATAATGGCGGATTCCTTGATCTTGGGTGGTGCACCCGGGATGATATCGG
GCATTGCATCTTTGACATCTGTTCCGCCATTGGGAGGATAATTCTCAGCT
AGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGT
CTTGAACATTGGGGCATACTTCTCACAGACGCCTCCTAAACGCCCGTGAG
CTTGAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGCATCACATCT
ACTGCAACCATAATGGCGGATTCCTTGATCTTGGGTGGTGCACCCGGCTT
GATCTCGGGCATTGCATCTTTGACATCTGTTCCGCCATTGGGAGAATAAT
TCTCAGCTAGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCA
CTCTGTGTCTTGAACATTGGGGCATACTTCTCACAGACGCCTCCTAAACG
CCCGTGAGCTTTAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTA
TCACATCTACTGCAACCATAATGGCGGATTCCCTGATCTTGGGTGGTGCA
CCCGGCTTGATCTCGGGCATTGCATCTTTGACATCTGTTCCGCCATTGGG
AGGATAATTCTCAGCTTGAGGTTTACGGCGATACTCGTTCCCAGCACCAA
CATGTTTCATACGTTTCGCATTGAAGTACTCTCTTGTGTTCTGCCGTGGC
CGTAACAACATAACGTAACATTTTCTACCGTACATCAAAAATAGAGTGAC
ATAACAATTGATGGTTAGGATAATGGCTCCTAGGAGTTCCTTATCGCTGT
GTAGACGACGGAAATAGGAAATCGGGAAACTAACGCTGAAGGAAACTGAC
GTGATCAAGATAGTGTAGAACAACGACATTGCTTCATTCATGATGTCAGG
TAGTTTACGGCAACGGTACGCTTGGACAGAGCACGTCAGCTGGAAGACGG
TTAAGAGTAGAATCTGGATATACTGATGAATCAGAGTATTGCAATGGTTG
AATCTAACCATAAATAGATCATCAGTGTACGAAACCATATTTGGTGAAAT
TTGTAAGGAAGTTATAGCTAGACAGCCATTGGTCAATATTAACAGTACAA
AGACTGTAAACGTTTGGAGTACCATTGTTCGTTTAATTTCCGTTGCTTTC
AGTTTGATTTTAGAAGCGAAAGCTTTGACAAGTTTCTGCGATTTAGTATA
GAGACAGGAGACGTGTAGAGTGTAGAGGATGCTTAGAATCAAAATTCGTC
CTATGCATAATTCAATGTTGAGATATGGTATTATATGGAGACATCCCGTG
AAAAAGAAAATTGAAAAGATACTTCCAAGATGTAAGAACGATAGGAATTT
GTCTGACGAACGCACTATCGGTGTATTGCCACAAACAAAATTAACATAAT
ATGGCTAGTACACAACCTAGTCCTGACGTAGTACATAAAATCCAACGTTG
TTCATCGTCAAACAGAAGCGGTTTGTTTGTATAAGGGTCAACGCAAGCTG
TTCGTTTGCCGTTATCTATACTGAGAACACCAGTGCAAGGCGTGCAAGAT
CCATCACCCGTACCAAGTTTTATTGTATTTTCCGGACAAAGCTCACATCT
TGTGCGATGTTCTTCGTCGAGTAATGTATTGGGGCTATTCACAAGACCGT
ACTTCGGTTGGAATCCAGGCAAACAATTTGTAGACGGACATTTAAGCTCA
GGGAAGAAAACATTTTCCAAGTACTGATTGGTTCTTTCGTTAGTATTGAC
TGAAACCTCTTCGAAAATATAATTGAGAAGCGGTAACGTATATTGGCGTT
TTAAGATATTTGTACTTTCGCTGTAAACTTGCGGTAATAGACTATGAATA
CTGTCTTCAGGATTGCGATTTAGTGCATCCCAACTTAAGATTCGTAAAAG
ACGGCGTATATAATCTAACATCATAACGCGTTGCTCATCTTGGGATTGCA
ATTCGTGGAGATGTTGTCGCCGTCTGTAGAACATCTCGAGCACGTTATAA
TTGTCACCATGTGCCGCTTCCATTTTAATGTCTTGAAAAATAATGGTTCG
ATTTTTAAGGGGTTTAATTTCCTTTTTGTATTTGAACAAAGAAGCAAGTC
CAAACAGGGTTGAATCTATGTAAGAATCCCCAAAGAAAATAACAACGGAA
TTATCGACTCCAGGTGACGTTAGAAGAGGCATGATTTTGTTGCTTAAGAA
AATATCAGGGAAATCCTGAAAATTTTCCTCAATAAAATTTTTGTCATATT
CAAGAAGTAAGTTAATTGTTTTCTTTTTGAGACAATATTTCTTCGTGTTC
TTCAAGTGATCATAAGTGTTCTGAAAATATTCTTCATACCGTGTTATGGG
TTCATTGCTTTTGTTTGATGATTGAACATTAACAAAAGTGACGTCATATA
AACCGAATCGGTTTAAAAAATCCGTCACTTGTAGAGTGTAATCCGTTAGC
ATGAAAATTGGGTAACGTTCGTCGCATCCCTGTGGGATACACAATCGAGC
GATGAGTGGATAAAGACTGCTGACAATGTCTTGTATGATTTTTGTCATTT
CTTCAGTCACGTGAGCGACTATGAGAAAAATGTTTTGTTTGCGATAAATA
GGAGAACGGGTTCTATTCAAAAGTGACCCACTTTTCGATTCCTCAGCCTG
AGTAGTATTCCCTGTTTCAATACCCTTGACTGGCGGAAAGAAATATTTTT
GGTCCAGAAACAATTCTGTTAGAAGTTTGATCAAAGTGTCCGTGTTATTA
CAAACGCTATAAGGAATGAAAGTGTTAGCTATCATGTTACTCAGCTCTTC
ACGAAAATCACTGATCATACGTCGAGACTTCAGATTAAACTCGTTGTCGG
TGTCAGAATTCGACTGACGTCCGTCGCCGTCGGGACATGCGGAAAAAAAG
CCGATGATCAGAAATTGCTTTAAAATATGATCTTGTGCTCCACTTTCTTG
TACTGGCGATCTGCTTGTAACAAACATCAGCGATTGGAAAAATATAAGAA
TGAAACACATCATTACCACATATTGAACCATTGTCACCATCATTCAACAG
CTTACGTTGATATGTGCGTTAAGGTTAAAGTTACACGTCTTCACTCCTTT
AACTCTAACTTCACTCCTTACGAGAGCTGGACCAATGAGAAGCACTCGGT
GGGCGTTTTAGGGCCGTAGATAGTGAATCGTTAGCTTCCTTAAAACCTAT
CTGGTGAGATATACTAGCAATCTTTAATAAATTTTTATGATAGCCGTAGA
TTTGATTTCCAATCACAAACTGTCCGATCAAAGTCACATTATTCAAGAAA
TTACAAAAGTCTTTGTTTTTATACCTCTGATATCAGCCACTGAAACAAGC
TTATGTAGCTTATAAGCCCTACCCTAGCTGTTTTCTTACAACATTTATAA
TCTCGTTAGTAAATCTATAAATATAACTATGTTATGAGTAATGGCTTCAG
CTTCAGTATTGAATCATATGAAATGGACATTGATTTGATGTATATCCTCG
CGGATTTTCTTGTAAATATAAACATTCTAAATCTCTTTTCAGGCTATTCC
TCAAAGATCCTTATCAAAAAGACGTATGATAAAGATCATTTAATAAATCT
TCTCTATCACATTATTGGAAATCTTATTCGTTAAACTGTCAATTGCTGCA
ACTCGAGAGGTTCAAAAAGGGCGTTTTTTTTGTTTTTTTTTTTACGATAA
TCGGTTCTTTCGTTGTCTTTTGTTTAGTTCGTGCTCTAAAAAGTGGTTTT
AGTCTTGGTTTTAGTGGCTATTTTGAGATTTTTCCAATATAAGATTGCGG
TTTTACAATAATTCCCAGATCATAAGAAATTCAACAAGTTGAAGGTGATA
AATATCTAGTATAGGGCCGATCCCCTTTCCATTCTTTTTTGAACCTACCT
CGGAGGTACTTTAATTTAACTTTTGTTTGTTCGTCCGTTCGTCTGTTACC
AGCTTTTAGGAATGGCCCATTATTTTTTTCTGATTTCTTGCATAATAATG
CAAAATGACAGTACCCAAAAAGTTACGATTTTCAAAAAAATATTTTTTGG
GCAAATTTGAACCAAAATAAAAACTGCCTAAAAATGGGGTTTTTCTAACT
TCTTGCATAAAGATAAAGGGCAAGTCTCTCTAAGTCGTTTTTTTCCAGGA
ATTTTTTTTTTGGCCGTCAAAATCTTATTTTGGGAAATTCCCATGTTTTG
TCATTTTTAAAATGAGCATTTCTCGTGATTTTCATGGTATTTTTTTCTGA
TTTTTTTCACAGTGATTTAAAATAGTAATCTTTGAAATCTGAGGGAGCCC
GATGTTCGAAAAAAATCGTTATTTAGTTTTTCCTTATTTTTCACACAGTG
ATGCGAAATTGTAATCCTTAAAATGTAAGACTTCAAGATTTTTTGAAAGA
AAAAGTTGTAGCCGAATTTGGGCCAAATTTTGGATTTGTGGAAATTGCTT
CATTAGATTTTTTCTTCATTAGAAGTATCTTAACATGAAAGAAAGGATTG
TTTTTCTTTCTGCTCAAAACTTAGTATGGCTTCTTACTTCTTACTTCTAA
AACATCGGGAAGCCCAGTGTGAAACAAGCTTCATCATGTTTTTCAAGCTC
ACGCATCTCTATGCTACGATGTTATCTTTTCGTCTTTTTCGTTCGAACAT
TTTCATCTTCATTCAGCATGTTTCCGACTATCTATCTCAGGTAGGTCCAT
TCAACATGATGCTTGTTTGTGTCAAAATAAGATTAAAAGTCTTGTTGCAA
GTTTAGAAGACGAAAAGAACTTTCCGTTTATCTTTTTAAGTCATCAAAAC
TAACAAGAAAAATATCAGCTTTGTGTGAAGTGTGCACTGCGTTAATCCTC
TTTTCTTATCTTCCTTACTTCAAATAGTTTTAATGTAGTCTAAAGATCAC
CAGAGCTTTGAATTTTTGATACTCTAAAATGTCCTTAGGTGATAAACTAG
TTCCCTAACCCGCTTGAAGCACAAATGCCTCAGCTGCTGTACCAATTAAC
TTCCACAACGAAATTAGTTTCTACACTCTAAAGTCAAAGTGCTTTGTATC
TCATTTAAAAATAAAATTCTTAAACTCTCTCTTGACATTCTTGATACACG
AAAAATCGTGTTCCTGTTTTTCTATTTCTAAATTGTTAGTTAACTTATCG
GCCAAAACCTAGTCGGCCTTAATTTTAGTCGGCCCTAATTTTAGTCACCT
CGTCAAAATTTAGTCACTAAGGGCCGACTAACAGTTAAGTTTTGGCCATT
TCTAAATTTTTAGTCGGCCCAGATTTTTGTTGGTCCTAATTTTTAGTCGG
CCCTAATTTTAGTCACCAAGCCAAAATTTAGTCACTTAGGGCCGACTAAG
TTTTGGCTGATACCCTATAACTTGCACTTGACAATGATCTGAAAATTCAA
TAAATGCCCTTTGTAAACGAAGTAATACGAAGTAATAGTCTGTCTGTCCG
TCTGTCTCTGTTAAATTCAGTTGAACTACAATGTGACAATGTCTATCTGT
TTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGACTTTTTGTCTGTCTGTCT
CTATGTTACTAAGTCTGTCTTTCACAAAGTCTTTAGGGCAGTCTGCAGAC
GAATTTCTAATTTTTGCTGAAATTTGGCCTTCAAATAGTTGGAAAAATAC
GGGCTCAGGACGTTGCGCACGTTTAAAATTAAAAGGCAAAAAAATTTCTC
CAACCTCACATAAATATTTACTCTTAGGTGCCAAATAAACGGGCCCCCCG
CTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCGGACCTTATTA
GGTCCGTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTT
CCTTGTTTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTA
GGGTTATTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGG
TCCGTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCC
TTGTTTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGG
GTTATTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTC
CGTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTT
GTTTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGT
TATTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCG
TTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGT
TTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTA
TTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTT
TATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTT
TACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATT
TTAAGGTCCATTTTCCAACCCCCCCCCCCGGTAATTAGGTTCCCCCCGAA
AAAATTTTCCAACCCCCCCGTTTATTCGAACCCCCCCCCCGTTTATTTGG
CACCTAAGAGTAGTAATTTCCAATCCTATGATTTTTATCCTTTAAGTGCA
TTTGTTTATTTTAGGTTCAACTCTCTGAGACAGTCGGTGATCTTCCAAAC
AAATTGGAAACTGAAGTTGCGGAATCAGGTTCAAACTTCAGCGTGGGTGA
AAGACAATTATTGTGCTTAGCCCGTGCTCTGTTGAAACGAAACAAAATCT
TGGTTATTGATGAGGCTACAGCCAATGTTGATTTCGAGTAAGAGATCTAT
ATAATCTGATTTGAGTAGAAGAAAACATTTGTGAGTCGAAAAGAATTTTA
CGGATTTTTGGGATTTCCCTGAAGTTTTTTTTAGGTTATGAGCATCCTTC
AAGACTTTTCCAAAAAAATTTGTACCCCTTATGTTGAAGAGGTCTTTTTT
GGAAAAGGTGACCCCTGGAATTTTTGGGTTTTCAACCTCATTTAATTGAC
CAACCTGGATTTTTACACTCGAAAAACTAAGGATGTATTAGACCTTCCTG
AAAGTCACACATCCTCAACTGGGGGTACAAACTATTTCTGGAATAATTGA
CACCCAAAATTCTATTTAACAATATTTTCCCCACCATGTTCTGTTTTTAG
AACCGATTCTTTGATTCAGGAAACGATTCGTATGAAATTCCAAGATTGTA
CAGTATTAACCATCGCTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031424XLOC_031424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049542-exon-scaffold_160-1575043694:87681..87709TCONS_00049542-exon-scaffold_160-1575043694:87681..87709Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:86457..86696TCONS_00049542-exon-scaffold_160-1575043694:86457..86696Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:85953..86053TCONS_00049542-exon-scaffold_160-1575043694:85953..86053Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:85272..85460TCONS_00049542-exon-scaffold_160-1575043694:85272..85460Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:84493..84648TCONS_00049542-exon-scaffold_160-1575043694:84493..84648Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:83550..83639TCONS_00049542-exon-scaffold_160-1575043694:83550..83639Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:72873..73045TCONS_00049542-exon-scaffold_160-1575043694:72873..73045Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1575043694:72439..72509TCONS_00049542-exon-scaffold_160-1575043694:72439..72509Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:87681..87709TCONS_00049542-exon-scaffold_160-1510915933:87681..87709Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:86457..86696TCONS_00049542-exon-scaffold_160-1510915933:86457..86696Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:85953..86053TCONS_00049542-exon-scaffold_160-1510915933:85953..86053Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:85272..85460TCONS_00049542-exon-scaffold_160-1510915933:85272..85460Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:84493..84648TCONS_00049542-exon-scaffold_160-1510915933:84493..84648Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:83550..83639TCONS_00049542-exon-scaffold_160-1510915933:83550..83639Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:72873..73045TCONS_00049542-exon-scaffold_160-1510915933:72873..73045Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1510915933:72439..72509TCONS_00049542-exon-scaffold_160-1510915933:72439..72509Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:87681..87709TCONS_00049542-exon-scaffold_160-1491911889:87681..87709Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:86457..86696TCONS_00049542-exon-scaffold_160-1491911889:86457..86696Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:85953..86053TCONS_00049542-exon-scaffold_160-1491911889:85953..86053Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:85272..85460TCONS_00049542-exon-scaffold_160-1491911889:85272..85460Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:84493..84648TCONS_00049542-exon-scaffold_160-1491911889:84493..84648Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:83550..83639TCONS_00049542-exon-scaffold_160-1491911889:83550..83639Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:72873..73045TCONS_00049542-exon-scaffold_160-1491911889:72873..73045Clytia hemisphaericaexon
TCONS_00049542-exon-scaffold_160-1491911889:72439..72509TCONS_00049542-exon-scaffold_160-1491911889:72439..72509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:72439..87709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00536266	1.80695	0	2.63648	5.46251	3.79421	2.18312	2.32173	2.71557	4.99119	0.00189673	1.49812	0.307418	5.55107	0.371043	0	2.98597	9.91854e-09	0	2.867	1.35663e-05	3.92671	0	0.220219	4.19329	1.98517	1.72918	1.79235	0.0780769	6.17818e-09
Blast
[Close]
BLAST of TCONS_00049542 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 363.229 bits (931), Expect = 3.255e-114
Identity = 177/350 (50.57%), Postives = 256/350 (73.14%), Query Frame = 2 
Query:    2 REVKRLDAVARSPLYTHLSATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFISLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAEAENLMVSVERLMEYADIENE-PDNGDLKADKNWPEKGRITASHTSFRYHQSLDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDVDIXXXXXXXXXXXXXIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEVQLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEATANVDFETDSLIQETIRMKFQDCTVLTIAH 1048
            R+VKRL++  RSP+++HLS++L G+ TIRA+  ++R    F    +  +E+W +F+++ RWF +RLD I  ++ ++  F  +IL   +  +D     ++++YALTL G+FQ+CVRQSAE EN+M+SVER++EY D+E E P     +    WP +G I   + +F Y      VLK ++ +I  +EK+G+VGRTGAGKS+L++ LFR+   +G++ ID +  + + L DLR  +SIIPQ+PVLF GT+RKNLDPF+++TD+++W AL EVQL ET+ DLP K++TE+AESGSNFSVG+RQL+CLARA+L++N+IL+IDEATANVD  TD LIQ+ IR KF  CTVLTIAH
Sbjct:  887 RDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLIL---AKTLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAH 1233
The following BLAST results are available for this feature:
BLAST of TCONS_00049542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP43.255e-11450.57Multidrug resistance-associated protein 4 OS=Homo ... [more]
back to top