TCONS_00049543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049543
Unique NameTCONS_00049543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049543 ID=TCONS_00049543|Name=TCONS_00049543|organism=Clytia hemisphaerica|type=transcript|length=2329bp
caaaaatgaaaagaacaattttaatcGAGGATCAAAGACAGAGATCAACG
CTTACAAAGTTTATGGACGTTGGTCGAAAAGTTACCGTCAGAAAATAAAG
TCAATTTAAAATATTTGATATGCTTTTTGGCGAAACTTGCTGAAAATTCA
GAAGTGAATAAAATGACGCCCAGCAATATTGCGATTGTTGTTGGACCTAA
CATGCTGTGGAACGACAACGATGGAGGTGTAAGCATAGCGGACACTGGTA
ATATTTCCATCATTGTTGAATCACTTATTGAACATTCCAATTGGTTTTTC
CCAGAAGGTTGCGAGTTCAAACGACACCAACTATCAGACGAACAAATAGA
CGCCATCAGCAATCGTTTTACCCAACGCGAAGGAGAGCAATCACCGGAAC
CTCTACAGCACTCCATCTCAGGTGGTTTATTCAGTGAAGTCTCTAAGAAG
TTGGGCTGGAACAAAGATGGGGCCGACATAACACAGGCCAATACAACAAG
CAACACAAACACCGCTGGTTCGCAGGCTACTTCCTCAGCGGCCATAGGCT
ATTATAATCCGCTCGCTGCACAATATGATCCAGATCTCGACGCCCTCTAC
GATAGCCCGCCCGTGCCGCCAAAACCACCATCTTCGAATACGGGTGGAGG
CGACGACTCCATGGAATTCAGTCGAACAATGTCAACGTCCTCTGTTGGAT
CGAatagCGAAGAATCCAACCTTTCAACGCCCGCTACACCCACCCATCGC
AGAACGCCTTCTGGCAATCTTCCGAAACGGCCAGCTCCGCCTCCACCTAA
AGGGCGTCCTCAAACACCTGGATCTCCCAAAACATCGAGTTCTCCTTCAC
TATACCCGAAGTTACCAAGTCCGCCTGACCATCCTGCACCGCCCCCGCCC
AAACCGAAATTATCGGCACTTGCAAAAACCACAAATATCGTTGACACTTT
AGAGAAAACTGAATGAACTTTGAAGTAAGAAATCTTTAAAAGTGTTTCAC
GTTAATTTAATGACGTTTCAATCTTAGAGTAGTTTTATCtgaattttcat
aatttaataTTTAAAGTTCAATCTTTTCTTAAAGTGGTGTAGCCATAGAT
TTTCGCCCTGCTGCATTATTGATTAAGTGCAGTAGGTTTTTCATATAAGA
ACGTACATCTTAAAGGCCTAATACttgaagaacatttttaacATTTGCAG
GCTTGTGTAGTACCAAAATACTCACATATGAAAGGCAAAAATGAGAATTT
GGACAGagtctgaaaaaagaaattttgaatttttgtgaagaACATcttca
gaaaaattatttttttataaaaagcctCTGGTCTTTGTTTTGTACTGTAA
AATCCCTGAAAAAGGCTTGGGCTAAATATATTTCCTCTTAAAAATTTTTG
CATCAGTATTTTTGACaagaaataatgaaattttaaattgattCGAATTA
AAATTCTTcatattttatataaaatatcataaaaatatatttttttagag
AATTCTAGAAGaatattcttgtttttttcttctagtGGGAGGGGTTTTGA
ATGTATaatcttttattatttttttatctataatgtgtttttgtttttgt
ttattttgatatgTTGTTCAACATTAGACATAATACACATTTTacaatat
aagaacaaactatcgGAACtagaggcttcgatggccaataTATTAAGAAG
ATGTTAAGAACGTTTTATGGACTCAATTAAACACGTAATTTTTTAGGAAA
TCGTACAAaaatttaacgtttttcagaatttaaagttcgggcgagaattg
ccaatttagcacttccactttcttccattgaatattttgagTTTAGAGGG
GTTCGGTGCCTTCTAGGCTTTATTATAAGCctttttggagcaaatttgag
cttttaaatcctgagatcctaagtctcatgttaaaacttaaacttaaaac
tctactttccgactgtagtttaacgcgctAAAAATTATTTGTGGTGTTTA
ATATATCGCAGGTAAATCGcctttgttttaaatattttgtccatgattgt
agatcaCTCAAAATACCACCATATCTTTCAAGACTTTGGAAGCAGGAAAT
ATCCCTAGTTTTTATTGATGTTATGGATAGCTATCTCAATAATTTGGCGC
TAACAAATTGTACCACGTTTATCAGTAAAACCTAAAAGTGATGCTAGTTT
CTCAGgtggaaaaatttaaaaaatttagttgaATTCTAGCGTGTAGCAAA
TTGATAcgtattttatttcaatgtaaatttttttgttattgttttcgttt
taaatcttaattttatttgtcaattttac
Run BLAST on NCBI

transcript from alignment at scaffold_160:176217..183429-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049543 ID=TCONS_00049543|Name=TCONS_00049543|organism=Clytia hemisphaerica|type=transcript|length=7213bp|location=Sequence derived from alignment at scaffold_160:176217..183429- (Clytia hemisphaerica)
CAAAAATGAAAAGAACAATTTTAATCGAGGTATATAGACCTTATGGGAGT
TTTTGATTGTTCTAAAAAAGCTATGCATTGTGGGATTGTTTCGAGTGTAT
TACATTAGAATTCCCTCGAGGAATTCCTAAGAGATATATCTATTGTAATA
CACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAAAAACT
CCGATAAGATCTATTGTCGTTGAATCATACTCTATTTCACTTTACTTCTT
TTAATACAGGATANATTGTCGTTGAATCATACTCTATTTCACTTTTTAAT
GTTACTTCTTTTAATACAGGATCAAAGACAGAGATCAACGCTTACAAAGT
TTATGGACGTTGGTCGAAAAGTTACCGTCAGAAAATAAAGTCAATTTAAA
GTATGTATACTGCTGAGTTTTTCCCAATTGAGTGACTCACTTGAATTTCA
AGCTACATTATTGTAACAGTCTCCATAACACGATGGGGAGCAATTTGATC
GAGTTAAGGAAATTTCAAGTTTTGGAGTAAGGTTTTTAAGGCATTGTTAA
GGAGATTTTCGAGTTGAAGTCCCCGTTGAAAATTGAAAAAAGGACTCACC
AAAGCTTTAGTTGAACCTCCCTGTACCACATTAATATAACCATGGAGGTA
TAAAGAAACAGGAGAAGTATGCTATTGTAACCATGCTCGCCCTACGATTA
AAAATATTACGAGGTATGCATGCTCATAATCTCATATATCGTGCATTTTT
AATGAGCTCTTTTGTTGATAGGTAAAATCTTATTGGCTAACTTAAGTGTT
GGAAATAAGATGGGACGAGATTCATTGTTTCTGACATTGATGTAAGAAAA
TATTTGGCCAAATAAAGGGCCTGTAAACTTTGCAATCCTTCATCAAATGA
CAAGATTTTTCGATCTACATTTTCTTCAAGGTGAACTCTATTGCTTAATA
CTTTCCTCCAAAATTCTCCAGCGACTTTTTGTCTACAAATTGGGTCTGAA
ATTGTGAGTGCTTATAAAGAACTTTTCATTTTCTGGCTTGAGAAAATATT
TTTTCAAAACAAAATTTAATGGATGACAAAATTGAACGCAAACTTATTTC
GTGGAGCTAAATTTTATTTTATTCTCGTATATTAGAAGGCTGGAAATCTT
CGATGCTGATAGTAAGAATGTTCAGAGCAAACTCGAGTTCTACTAAAAAG
TCCTATTTCATCGGGCGAGCCTAGAATTTCTTTTGATTTATTACATAAAA
GAAATCAAAAGACTTTAACGACCAATTACCGACAAATTCATCTCCTGTCT
TTCTTTATACCTCTATGATATAACAAAGTCTTTCTATTCTAAACATTTCC
ACCCTGACATAATCAAACGTCCGGACTTTTTTCTGGGACACCCGGTACAT
TTTTTCGATAGAAAGGTAGTTTATCGATAAATTTTCGCAATCAAAACAAA
ATACGAAAATAGTTACAGTTGAACTCATGTAATTCGAATTCTCAAGGGAC
CGAGAATTTTGTTATCGAATTACATGAGTTTCGAACTAAATGTGAGTTTT
CGTATTTTTGACATAATTCGATATGAAAAAAGTCTTTGATTGTTGATTGT
TTCATTTTCTGCTCTCGTTTCTTGGAAATCTCTTCGGAGATCTTCTGAAT
CAGTGGGATGACGTTCGATGATTCGAAAAGGATCATTTTTTTAGACTCTC
GATCGCGTCGTCAATTCCATTTTGCCGAATTTTCGACTTCTAGTGCTTAG
AATTTTATGGGGAAAACAGCGGGACCGGTATTTTCAAAAATTTTGGACGG
GATAACGGTAATTTTCAAAAAAATGGCCGGGATGGCGGTAATTCAAAACC
CCTTTTGTGGATCTTTCATTTACAATGATTTTATGATGCAAATGTATTAT
CAAGGGCATATAATTAATGTCTAAAACCCTCTGAGGAGTAAGTATTAACG
ACAAACCAATAAAATTTTCCATTAAAGATGCTACATTACTGATTTCTTGA
TCAACAAATAGTCATCAAATACGACAGAGATAGAACAACAGAAATTCAGA
TGTTATCATTCCAGCCGCGGCTTTCTTATACTATGATTCGACTAAAGTAC
TCTTCTTTGATTACAAAAATCATTGCGTACCTCGTTTTTAAACTATTATT
TCTAAGATACTTGTCTAATTACAGAGAGTAGTTTGAGTCATTTTCCAGGT
GAGAGGACCAATATTTTAGTTCGAATTACAGAAAGATTCGAAAAATGGAA
GGTCGTTTTTGGGAGTATCTGACACTGTAATTGTTCTAGTTGAAAACTGT
TGAGCAAAGCTTATAAAATTATCATCGACCGACACTCTCTTTTTGCAGAT
ATTTGATATGCTTTTTGGCGAAACTTGCTGAAAATTCAGAAGTGAATAAA
ATGACGCCCAGCAATATTGCGATTGTTGTTGGACCTAACATGCTGTGGAA
CGACAACGATGGAGGGTGAGTGTTCTTTCTAGGTGTGCTCTCCTTCGTTA
TGGCTTTGGAATGGTTTTGTAAAAAGCTCAAAGGTTTTTGAATACCTTAT
CGGCCCTTTTTACGCCGGCCCTTTTAACGTCGGCCCTTATTACGCCACGA
GCCCAAAAATAACGCCAATAAGGGCCGGTGTAAAAAGGGCTGATAAGGTA
GATTGCAGTTTTTCACCGTCATTTGAGTAAAAATTAGGCGGCGATTTTTT
TAAATTTTTATTGTGTTTACCTGTGTTCCATACTGAATTTTTATCATGTT
TTAGTGTAAGCATAGCGGACACTGGTAATATTTCCATCATTGTTGAATCA
CTTATTGAACATTCCAATTGGTTTTTCCCAGAAGGTAAGATTTTGGAATT
TTGAAAAACTGTGGAAAGAATTTTCTTCAAAATTTAGGCATTGGGCTATA
GAAATAATTCAAAATAAATTAATATAAAGTTACCTTCCCGGATAGAATAA
GTTGAAATGCTCCACAGTCAACTTTAAAGATATTCGTTTTTATGATAGAA
TTTGCACCTCTGCTGATAAAGCATAGAATTTTAAAATTGTGCCTGCACGA
CGCCGAAAGGAGAGAAAGTGGCGGACGAGTTAGCCCTTTCCGTGCCGATG
TCGGCATATGCTGACATGAGCATTTTCGATTTCCTTGCCATTGTCGGGAT
TTGCCGACATGCGAAATTTCGACCTATTTGCCGAAAATTTATCACTTTTT
ACAAGACTTTTGTATTAGGTGGTTTGAAATGAAAAAAATGAATAGTTACA
AACTTTTCTATGTTGAAAAATAACTATTCTACAATGTTCGACTCAAAATT
ATAGTCCTTGGCTAATACTTCATATATTATTCAGAAAATGAAAGTGAAAA
TCGCTACTTTTTGCCCTGGCAAATAGGTCGAGGGTGTAAAAAAATAGGCC
GGCAAATAGGTCGAACCTTAAAAAATACGCACGGCAGTTAAAGGGTTAAT
TGAACATTCTAATTGGTTTTTCCCTGAAGGTAAAATTTGGGTAATTTGAA
AAACTGTGGAAAAATTTCCTTCAAAATCCATTTTCTTTTGAACATAAACG
CTGGGCTAATCTAAGAAAGATGATTGGAGATGATTTAATAATTGATGTCT
TTTATATCAGGGTTGTTTTAATGTATGTACTTTAATGGGTTTAATTTTCG
CTGATATTAAATTTCGCGGTTGAGCTCATCCGTGAAATTTTAATACTTCG
TTGGGTCTTAATTTCATTGATGGTATTATTGGGTGACAATATTTCTCACA
ATTTTGTGCCTTTTACTGTCTGATAATGTATGTTGGTTGTTGATGCCAGT
AAACATTCAAAAAATATTTATTTGACATTTTTTAAAGTTTTGTTTAGAAA
TATTTCGCGGATAAAGATTTTCCAAATTTCCATTGGGATTTATTTTCACG
TATCACACCCAAATCTGCGAAATCCGCGAAATATCATCCCTACAAAAATT
TGTCCCATTATGCTTTTGATCAAAAGGTTGCGAGTTCAAACGACACCAAC
TATCAGACGAACAAATAGACGCCATCAGCAATCGTTTTACCCAACGCGAA
GGAGAGCAATCACCGGAACCTCTACAGCACTCCATCTCAGGTGGTTTATT
CAGTGAAGTCTCTAAGAAGTTGGGCTGGAACAAAGATGGGGCCGACATAA
CACAGGCCAATACAACAAGCAAGTAAGTCGAAAATATATAGTGGAGTCTC
CATAAATCGAACACCTCGAACACGAACGGGGAATGCAAATTTATTCGAAT
GAAGAAAATCTCGAGTTATGGAGTAAGGTTTATAAGGCATTGTAAACTTA
AGGGACCAGCAAACTTGTTCGAGTTATAGAGTCTCGAATTATGGAGATTA
CACTGCACTGTAGTACAAGACTAAAATCTTTCCATCACGCGAACCTCTCT
AATTCGAATACTTGAAGTAGCAAGGTATAAACTTCCCTCTCCACGGTAAA
GTGACTGAAGCAATTTGGAATAACTCGCTGTTTTGACCCGCAAATCGAGG
AGGGTAAAAGTCCTGATTTACCGTCATCCTCAGCCAGTTAGGATCTAGAC
AACTTAGAAACTTAGCGTCTCTGTCGCAGAAAAACACACATACATAAGCT
TGGTAATATTCAAACATTACTTCAACTTTCTACTAAAGCGTACAATTACT
GACCGATCGCAAGCTTCTTGTAACTGAGCAAAAAATGAACAAATGTTGAA
TTCTCCAATATAATTTGATTGTCAACTCTCTCTCTCTAATTCGAACCTCT
ATCATTCATGTTTCTCTGTTGAACTTGAAAATTGCCCCATTAAATTGTTA
CATTAAAAGTTATCCATAATCATAATCTTGAGTTCTAAAATCAAATTAAA
AAAGAGTCAACTTATATAGATTTTAAAAACACATATTTTCTTGAATAAAA
TACGAAGCTTTTCGTAAGACGAACTTCGTATTTTATTCAAGAAAATAACA
TGGCTTATTGATTGATAAAACTGTAAAACTAACTTGCCAGTTTTCAACAT
AATTATTCTCAATAACCAAATAATACGTTCGACTAACGAACAATCAGTAC
GTAGTAGAATAACAAACGTAGTACGCCTCTCTGTTTTAATTAAGTGTAAT
TCTTCATTGTAGCACAAACACCGCTGGTTCGCAGGCTACTTCCTCAGCGG
CCATAGGCTATTATAATCCGCTCGCTGCACAATATGATCCAGATCTCGAC
GCCCTCTACGATAGCCCGCCCGTGCCGCCAAAACCACCATCTTCGAATAC
GGGTGGAGGCGACGACTCCATGGAATTCAGTCGAACAATGTCAACGTCCT
CTGTTGGATCGAGTAAGTATAAGATTGTTAAACCAAGGGCCATTTAACGG
TCGCGGCGAGTCATGGGGATCAGGACCAATATTTCTATTGGTTCAATCTT
TCTGATAGAGCGCAGTCAGACCTGTTTACCAATGGTTCTCTTCGACCAAG
AAGTAGCTTATTGTTTTATTTCTAGAAAAGTATACAGTTGACGCTCTCTA
ATGCGACGTCCTCCTATACGGTACGCTCCATTACCAAGGCTTCAAAACTG
GAAAATTATCATCAATGTCTTGATTTTTTTATTTCAGATAGCGAAGAATC
CAACCTTTCAACGCCCGCTACACCCACCCATCGCAGAACGCCTTCTGGCA
ATCTTCCGAAACGGCCAGCTCCGCCTCCACCTAAAGGGCGTCCTCAAACA
CCTGGATCTCCCAAAACATCGAGTTCTCCTTCACTATACCCGAAGTTACC
AAGTCCGCCTGACCATCCTGCACCGCCCCCGCCCAAACCGAAATTATCGG
CACTTGCAAAAACCACAAATATCGTTGACACTTTAGAGAAAACTGAATGA
ACTTTGAAGTAAGAAATCTTTAAAAGTGTTTCACGTTAATTTAATGACGT
TTCAATCTTAGAGTAGTTTTATCTGAATTTTCATAATTTAATATTTAAAG
TTCAATCTTTTCTTAAAGTGGTGTAGCCATAGATTTTCGCCCTGCTGCAT
TATTGATTAAGTGCAGTAGGTTTTTCATATAAGAACGTACATCTTAAAGG
CCTAATACTTGAAGAACATTTTTAACATTTGCAGGCTTGTGTAGTACCAA
AATACTCACATATGAAAGGCAAAAATGAGAATTTGGACAGAGTCTGAAAA
AAGAAATTTTGAATTTTTGTGAAGAACATCTTCAGAAAAATTATTTTTTT
ATAAAAAGCCTCTGGTCTTTGTTTTGTACTGTAAAATCCCTGAAAAAGGC
TTGGGCTAAATATATTTCCTCTTAAAAATTTTTGCATCAGTATTTTTGAC
AAGAAATAATGAAATTTTAAATTGATTCGAATTAAAATTCTTCATATTTT
ATATAAAATATCATAAAAATATATTTTTTTAGAGAATTCTAGAAGAATAT
TCTTGTTTTTTTCTTCTAGTGGGAGGGGTTTTGAATGTATAATCTTTTAT
TATTTTTTTATCTATAATGTGTTTTTGTTTTTGTTTATTTTGATATGTTG
TTCAACATTAGACATAATACACATTTTACAATATAAGAACAAACTATCGG
AACTAGAGGCTTCGATGGCCAATATATTAAGAAGATGTTAAGAACGTTTT
ATGGACTCAATTAAACACGTAATTTTTTAGGAAATCGTACAAAAATTTAA
CGTTTTTCAGAATTTAAAGTTCGGGCGAGAATTGCCAATTTAGCACTTCC
ACTTTCTTCCATTGAATATTTTGAGTTTAGAGGGGTTCGGTGCCTTCTAG
GCTTTATTATAAGCCTTTTTGGAGCAAATTTGAGCTTTTAAATCCTGAGA
TCCTAAGTCTCATGTTAAAACTTAAACTTAAAACTCTACTTTCCGACTGT
AGTTTAACGCGCTAAAAATTATTTGTGGTGTTTAATATATCGCAGGTAAA
TCGCCTTTGTTTTAAATATTTTGTCCATGATTGTAGATCACTCAAAATAC
CACCATATCTTTCAAGACTTTGGAAGCAGGAAATATCCCTAGTTTTTATT
GATGTTATGGATAGCTATCTCAATAATTTGGCGCTAACAAATTGTACCAC
GTTTATCAGTAAAACCTAAAAGTGATGCTAGTTTCTCAGGTGGAAAAATT
TAAAAAATTTAGTTGAATTCTAGCGTGTAGCAAATTGATACGTATTTTAT
TTCAATGTAAATTTTTTTGTTATTGTTTTCGTTTTAAATCTTAATTTTAT
TTGTCAATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031425XLOC_031425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049543-exon-scaffold_160-1575043694:183401..183429TCONS_00049543-exon-scaffold_160-1575043694:183401..183429Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:183030..183110TCONS_00049543-exon-scaffold_160-1575043694:183030..183110Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:180965..181081TCONS_00049543-exon-scaffold_160-1575043694:180965..181081Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:180596..180675TCONS_00049543-exon-scaffold_160-1575043694:180596..180675Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:179258..179453TCONS_00049543-exon-scaffold_160-1575043694:179258..179453Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:178118..178317TCONS_00049543-exon-scaffold_160-1575043694:178118..178317Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1575043694:176217..177842TCONS_00049543-exon-scaffold_160-1575043694:176217..177842Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:183401..183429TCONS_00049543-exon-scaffold_160-1510915933:183401..183429Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:183030..183110TCONS_00049543-exon-scaffold_160-1510915933:183030..183110Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:180965..181081TCONS_00049543-exon-scaffold_160-1510915933:180965..181081Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:180596..180675TCONS_00049543-exon-scaffold_160-1510915933:180596..180675Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:179258..179453TCONS_00049543-exon-scaffold_160-1510915933:179258..179453Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:178118..178317TCONS_00049543-exon-scaffold_160-1510915933:178118..178317Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1510915933:176217..177842TCONS_00049543-exon-scaffold_160-1510915933:176217..177842Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:183401..183429TCONS_00049543-exon-scaffold_160-1491911889:183401..183429Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:183030..183110TCONS_00049543-exon-scaffold_160-1491911889:183030..183110Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:180965..181081TCONS_00049543-exon-scaffold_160-1491911889:180965..181081Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:180596..180675TCONS_00049543-exon-scaffold_160-1491911889:180596..180675Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:179258..179453TCONS_00049543-exon-scaffold_160-1491911889:179258..179453Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:178118..178317TCONS_00049543-exon-scaffold_160-1491911889:178118..178317Clytia hemisphaericaexon
TCONS_00049543-exon-scaffold_160-1491911889:176217..177842TCONS_00049543-exon-scaffold_160-1491911889:176217..177842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:176217..183429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.616506	0.0807946	2.06108	0.914146	0	0	0	0	0	0	0.179751	0	0	0	0	0	0	0	0	0.405157	0.458164	2.24563	1.24559	0.679217	0	0	0.936028	2.38452	0.785086	0.0450459
Blast
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BLAST of TCONS_00049543 vs. Swiss-Prot (Human)
Match: RHG17 (Rho GTPase-activating protein 17 OS=Homo sapiens GN=ARHGAP17 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.474e-28
Identity = 52/99 (52.53%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   31 IKDRDQRLQSLWTLVEKLPSENKVNLKYLICFLAKLAENSEVNKMTPSNIAIVVGPNMLWNDNDGG---VSIADTGNISIIVESLIEHSNWFFPEGCEF 318
            ++D+D++LQ LW   +KLP +N VN +YLI FLAKLA+ S+VNKMTPSNIAIV+GPN+LW  N+G    ++ A + ++  ++E +I+H++WFFPE  EF
Sbjct:  350 VQDQDKKLQDLWRTCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMAAATSVHVVAVIEPIIQHADWFFPEEVEF 448
The following BLAST results are available for this feature:
BLAST of TCONS_00049543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG175.474e-2852.53Rho GTPase-activating protein 17 OS=Homo sapiens G... [more]
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