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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049554 ID=TCONS_00049554|Name=TCONS_00049554|organism=Clytia hemisphaerica|type=transcript|length=1308bpRun BLAST on NCBI transcript from alignment at scaffold_160:225101..237479- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049554 ID=TCONS_00049554|Name=TCONS_00049554|organism=Clytia hemisphaerica|type=transcript|length=12379bp|location=Sequence derived from alignment at scaffold_160:225101..237479- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049554 vs. Swiss-Prot (Human)
Match: FMNL3 (Formin-like protein 3 OS=Homo sapiens GN=FMNL3 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 2.374e-22 Identity = 91/351 (25.93%), Postives = 159/351 (45.30%), Query Frame = 2
Query: 284 LRRFEGNKKEDIMLKALKFKSNKKESVREGRHSVQFYMNQLCRHLDPQLRTKSPSKKLLKGXXXXXXXXXXXXVDLRSNPNATWLREFIDEPNCGHVVLLRFLKYLQ-----------------------------DHSSPVAMA----NSLERANNYKNKKTDALLSR----------EPNDEHLCLLCLKAIVRNKYGFHKVLSAPRSLATMTYCLRLSNVKTKIAVLRILSEACDHGGGFDKALQAFEDYKQIKKERYRFESLVHSVILKGKQSTPTYQEVVVHFFNALLSNAPSLNQRVFHQQELEQAGFTAERVEQTLEGLSSEGIYDELSKWRNNYIDVSTTLDE 1207
LR+++ KK D++ +F+ V+ H+ Y+ +L LDP + KK + + +L LE+ LR+N + W+REF+++ N G VL+ +L + Q D P A++ NSL R+ + L R + +D H+C+LCL+AI+ +YGF+ V+S P ++ + L N +TK VL +L+ C GG + L AF+++K++ KE +RFE L+ + + S + + F N ++ + +N RV Q E + G E Q SE + ++ + +N DV L++
Sbjct: 55 LRQYDNEKKWDLICDQERFQ------VKNPPHT---YIQKLQSFLDPSV----TRKKFRRRVQESTKVLRELEISLRTN-HIGWVREFLNDENKGLDVLVDYLSFAQCSVMFDFEGLESGDDGAFDKLRSWSRSIEDLQPPSALSAPFTNSLARSARQSVLRYSTLPGRRALKNSRLVSQKDDVHVCILCLRAIMNYQYGFNLVMSHPHAVNEIALSLNNKNPRTKALVLELLAAVCLVRGGHEIILAAFDNFKEVCKELHRFEKLME--YFRNEDSNIDFMVACMQFINIVVHSVEDMNFRVHLQYEFTKLGL--EEFLQKSRHTESEKLQVQIQAYLDNVFDVGGLLED 387 The following BLAST results are available for this feature:
BLAST of TCONS_00049554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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