TCONS_00049558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049558
Unique NameTCONS_00049558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049558 ID=TCONS_00049558|Name=TCONS_00049558|organism=Clytia hemisphaerica|type=transcript|length=404bp
GGAACCGATAAGAAATCGAGACAAATctataaaaacaacaaaccCATGTG
AGCTCAAAATGGTCAAACTCTCTAAGTTTATTTTCGATAGAACTTCCTTC
TTTGTTCAAGACTTCGAAAAGCCACTTCGCCGACTAGCGTGCACAAGTTG
CATCACTTGCCTAGAATATTCTTTTTGCAAGATTACAAAACTTGCTTGGT
ACTAAAAACTGGATAGGACAGTGATACTTCTTTGAACTTATCACCTGGAT
AGGGATTACCACAAAATGTTGTCAGTTTTGAGAAGATCAAAGAGCATATT
TTCAACAGGTGTATACCAAAACTTGGGGAAATATGTAAGTTTTTTTCCAT
TATTGCTTTTcctctgaaaatatttgaaatttgttCTGTGTCCTACAATA
AAAT
Run BLAST on NCBI

transcript from alignment at scaffold_160:141263..141666

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049558 ID=TCONS_00049558|Name=TCONS_00049558|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at scaffold_160:141263..141666 (Clytia hemisphaerica)
ATTTTATTGTAGGACACAGaacaaatttcaaatattttcagaggAAAAGC
AATAATGGAAAAAAACTTACATATTTCCCCAAGTTTTGGTATACACCTGT
TGAAAATATGCTCTTTGATCTTCTCAAAACTGACAACATTTTGTGGTAAT
CCCTATCCAGGTGATAAGTTCAAAGAAGTATCACTGTCCTATCCAGTTTT
TAGTACCAAGCAAGTTTTGTAATCTTGCAAAAAGAATATTCTAGGCAAGT
GATGCAACTTGTGCACGCTAGTCGGCGAAGTGGCTTTTCGAAGTCTTGAA
CAAAGAAGGAAGTTCTATCGAAAATAAACTTAGAGAGTTTGACCATTTTG
AGCTCACATGggtttgttgtttttatagATTTGTCTCGATTTCTTATCGG
TTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031429XLOC_031429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049558-exon-scaffold_160-1491911889:141263..141666TCONS_00049558-exon-scaffold_160-1491911889:141263..141666Clytia hemisphaericaexon
TCONS_00049558-exon-scaffold_160-1510915933:141263..141666TCONS_00049558-exon-scaffold_160-1510915933:141263..141666Clytia hemisphaericaexon
TCONS_00049558-exon-scaffold_160-1575043694:141263..141666TCONS_00049558-exon-scaffold_160-1575043694:141263..141666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:141263..141666 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.3055	33.4283	11.4641	12.5352	53.7017	47.1891	46.314	51.5889	12.9825	11.1959	18.9348	20.9545	27.8735	28.9817	27.6789	29.9625	24.0944	36.3035	10.4699	18.268	43.0962	41.8281	62.6086	62.2846	39.8323	66.8217	20.0199	29.6189	34.4477	39.8144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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