TCONS_00049561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049561
Unique NameTCONS_00049561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049561 ID=TCONS_00049561|Name=TCONS_00049561|organism=Clytia hemisphaerica|type=transcript|length=384bp
GTTACGTTTGCTGATGCACCTCTGCTTGAATCGCTCGAGTTGGTTGACAT
TTTCTTGATCCCTCTTGTGCTCTTCACAGACAAGCACGTGTTTCTTGATG
GTGAAGTTGTCATGATCTTTGTGTCTGCATATGAATTGACGTTGACATTT
ACCTTCCTGATGCTTGCCAGTGTCGACGTGGGCACCAGGGAAAAGACATT
GGTGACACAAATGTTTACGTTTTAGGATGGAAAAGCGTTCAGAAGGTGAC
ATATCTGCGAATTCCTTGCAGACAAAGTATTGGATCAGCTTGTTTTCTTT
TGGTCCAATGGTTGTTGGATGATCCTTTGAACCACAAATGACGCACTGAG
TTTGATCGTCTGGAATTGGAATTGAAGGATCTCG
Run BLAST on NCBI

protein sequence of TCONS_00049561-protein

>TCONS_00049561-protein ID=TCONS_00049561-protein|Name=TCONS_00049561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
RDPSIPIPDDQTQCVICGSKDHPTTIGPKENKLIQYFVCKEFADMSPSER
FSILKRKHLCHQCLFPGAHVDTGKHQEGKCQRQFICRHKDHDNFTIKKHV
LVCEEHKRDQENVNQLERFKQRCISKRN
Run BLAST on NCBI

transcript from alignment at scaffold_160:258512..258895

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049561 ID=TCONS_00049561|Name=TCONS_00049561|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at scaffold_160:258512..258895 (Clytia hemisphaerica)
CGAGATCCTTCAATTCCAATTCCAGACGATCAAACTCAGTGCGTCATTTG
TGGTTCAAAGGATCATCCAACAACCATTGGACCAAAAGAAAACAAGCTGA
TCCAATACTTTGTCTGCAAGGAATTCGCAGATATGTCACCTTCTGAACGC
TTTTCCATCCTAAAACGTAAACATTTGTGTCACCAATGTCTTTTCCCTGG
TGCCCACGTCGACACTGGCAAGCATCAGGAAGGTAAATGTCAACGTCAAT
TCATATGCAGACACAAAGATCATGACAACTTCACCATCAAGAAACACGTG
CTTGTCTGTGAAGAGCACAAGAGGGATCAAGAAAATGTCAACCAACTCGA
GCGATTCAAGCAGAGGTGCATCAGCAAACGTAAC

Coding sequence (CDS) from alignment at scaffold_160:258512..258895

>TCONS_00049561 ID=TCONS_00049561|Name=TCONS_00049561|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_160:258512..258895 (Clytia hemisphaerica)
CGAGATCCTTCAATTCCAATTCCAGACGATCAAACTCAGTGCGTCATTTG
TGGTTCAAAGGATCATCCAACAACCATTGGACCAAAAGAAAACAAGCTGA
TCCAATACTTTGTCTGCAAGGAATTCGCAGATATGTCACCTTCTGAACGC
TTTTCCATCCTAAAACGTAAACATTTGTGTCACCAATGTCTTTTCCCTGG
TGCCCACGTCGACACTGGCAAGCATCAGGAAGGTAAATGTCAACGTCAAT
TCATATGCAGACACAAAGATCATGACAACTTCACCATCAAGAAACACGTG
CTTGTCTGTGAAGAGCACAAGAGGGATCAAGAAAATGTCAACCAACTCGA
GCGATTCAAGCAGAGGTGCATCAGCAAACGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031432XLOC_031432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049561-exon-scaffold_160-1491911889:258512..258895TCONS_00049561-exon-scaffold_160-1491911889:258512..258895Clytia hemisphaericaexon
TCONS_00049561-exon-scaffold_160-1510915933:258512..258895TCONS_00049561-exon-scaffold_160-1510915933:258512..258895Clytia hemisphaericaexon
TCONS_00049561-exon-scaffold_160-1575043694:258512..258895TCONS_00049561-exon-scaffold_160-1575043694:258512..258895Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049561-proteinTCONS_00049561-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:258512..258895 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72333	1.78996	0.797915	1.56105	0.483021	1.74243	1.66126	2.21161	1.22031	0.92864	0	1.82067	1.23309	2.10568	0.115117	0.247076	0	0.0519961	1.09069	2.43159	0	0.434946	0.232446	0.211327	0.398275	1.77846	0.725126	0.203462	0.490799	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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