TCONS_00049565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049565
Unique NameTCONS_00049565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049565 ID=TCONS_00049565|Name=TCONS_00049565|organism=Clytia hemisphaerica|type=transcript|length=430bp
GACCAGATAGAGACCACATCgaacagccaataaaaacaataacaaacaaa
cagttcttctttccactggaataggccagaaataaacaaaataaattctt
ccTGGTTTCATGCCATATCCAAAAAATATTCGTTGCCATCCCAAAGCATA
CAAAAAGTACAAGTTCGTCTTCCTTTCAATCATCATTGGATTGCAGCACT
TATGGTTATAGGTAGGATAGGATCTAATctgatttgataattttcattct
CAATGTTTACAGTCTCTGGGATTCTTCAATCCTGTTATGGAAATAACCCA
ACAACTCTGCTGCTGTTGATGCAAAAAAAGgatttccatcttcttttctC
CTCCATCCACTGATACTGTTTCTTTTTCGTTCGgtttaaacttttcaaaa
caaatgattttggttctctctcaaaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_160:274463..274892

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049565 ID=TCONS_00049565|Name=TCONS_00049565|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_160:274463..274892 (Clytia hemisphaerica)
atttttttgagagagaaccaaaatcatttgttttgaaaagtttaaacCGA
ACGAAAAAGAAACAGTATCAGTGGATGGAGGagaaaagaagatggaaatc
CTTTTTTTGCATCAACAGCAGCAGAGTTGTTGGGTTATTTCCATAACAGG
ATTGAAGAATCCCAGAGACTGTAAACATTGagaatgaaaattatcaaatc
agATTAGATCCTATCCTACCTATAACCATAAGTGCTGCAATCCAATGATG
ATTGAAAGGAAGACGAACTTGTACTTTTTGTATGCTTTGGGATGGCAACG
AATATTTTTTGGATATGGCATGAAACCAggaagaatttattttgtttatt
tctggcctattccagtggaaagaagaactgtttgtttgttattgttttta
ttggctgttcGATGTGGTCTCTATCTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031436XLOC_031436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049565-exon-scaffold_160-1491911889:274463..274892TCONS_00049565-exon-scaffold_160-1491911889:274463..274892Clytia hemisphaericaexon
TCONS_00049565-exon-scaffold_160-1510915933:274463..274892TCONS_00049565-exon-scaffold_160-1510915933:274463..274892Clytia hemisphaericaexon
TCONS_00049565-exon-scaffold_160-1575043694:274463..274892TCONS_00049565-exon-scaffold_160-1575043694:274463..274892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:274463..274892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.748856	1.10341	1.85803	0.922935	1.61036	0.595702	0.552421	0.887942	0.135278	0.347754	0	1.0012	0.209063	0.549689	0.425343	0.101258	1.57513	0.614106	0.55623	0.504739	0.300557	0.742704	1.33313	1.19746	5.09053	3.23898	0.771071	0.878756	0.483614	0.62425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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