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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049569 ID=TCONS_00049569|Name=TCONS_00049569|organism=Clytia hemisphaerica|type=transcript|length=640bp
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAAT
TGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATT
CGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATA
TTATCCACTTGTACGTGAATATGATTTTGCTCTATATGGCATCAAATTCg
aaagAGATTTGAGCAATTATATGGACCATAATTATGAAATTGAAGTGATC
GTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAAC Run BLAST on NCBI transcript from alignment at scaffold_161:136169..137427+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049569 ID=TCONS_00049569|Name=TCONS_00049569|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_161:136169..137427+ (Clytia hemisphaerica)
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGGTGAGTACCTTAACGCAAAacggatttttc
attttttttcgggattttcTAATTCTTGtcatgaaaaaaggaaaattatt
aaatatcTTCATTAAGTATCTTTGCGGGGAAATCACTCAGTTATTTCAAT
TCAACCTCGTATTTGATATCGTTTATATCTTTTTTCACCATAGTAACATC
TCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaa
agaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAA
ACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTT
TGCTCTATATGGCATCAAATTCgaaaggtattttttttttaaaattaccT
GACTATGGCCCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAA
AACTTTGTCAGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAAC
TAAATTTCTAcgagaaaaaactatataagaacacaaggctacGATAGCTA
AAATATTAAGGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGT
TCTGGAATCcgtttcagaattttcaaagtAAGCTAttcttatattgttgt
ttcttttaaactagtgttttttttctaaaataagcACCGcggtttaaatt
tatttttcgctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGA
CCCATTTTTATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcac
attttcctttaaaatattTGCAGAGATTTGAGCAATTATATGGACCATAA
TTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATG
GCGGACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049569-exon-scaffold_161-1491911889:136169..136538 | TCONS_00049569-exon-scaffold_161-1491911889:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1510915933:136169..136538 | TCONS_00049569-exon-scaffold_161-1510915933:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1575043694:136169..136538 | TCONS_00049569-exon-scaffold_161-1575043694:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1491911889:136712..136895 | TCONS_00049569-exon-scaffold_161-1491911889:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1510915933:136712..136895 | TCONS_00049569-exon-scaffold_161-1510915933:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1575043694:136712..136895 | TCONS_00049569-exon-scaffold_161-1575043694:136712..136895 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1491911889:137342..137427 | TCONS_00049569-exon-scaffold_161-1491911889:137342..137427 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1510915933:137342..137427 | TCONS_00049569-exon-scaffold_161-1510915933:137342..137427 | Clytia hemisphaerica | exon |
| TCONS_00049569-exon-scaffold_161-1575043694:137342..137427 | TCONS_00049569-exon-scaffold_161-1575043694:137342..137427 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:136169..137427 + |
Blast
The following BLAST results are available for this feature:
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