TCONS_00049570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049570
Unique NameTCONS_00049570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=transcript|length=872bp
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAAT
TGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATT
CGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATA
TTATCCACTTGTACGTGAATATGATTTTGCTCTATATGGCATCAAATTCg
aaagAGATTTGAGCAATTATATGGACCATAATTATGAAATTGAAGTGATC
GTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAACCACGTGCCCG
GACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGCGGTCGTGAAT
TTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAACATCACAGAC
TGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGAAAAACCGAAG
GGAAAATTTACTCTCAGAAATACACAAATTTCctatatacatgttttttt
ttatacaaaaatccgaaaacag
Run BLAST on NCBI

protein sequence of TCONS_00049570-protein

>TCONS_00049570-protein ID=TCONS_00049570-protein|Name=TCONS_00049570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MDWQVFGIIWFSLLTMVTSLNTYSFELHSDQKIGEKIIRCLFIRLSDETT
GQTHDFSQRYYPLVREYDFALYGIKFERDLSNYMDHNYEIEVIVNHDWCS
FENGGQPRARTGDLKGTNLKRISGREFYYTMTVDIKAVVNITD
Run BLAST on NCBI

transcript from alignment at scaffold_161:136169..138600+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at scaffold_161:136169..138600+ (Clytia hemisphaerica)
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG GTTCAGTTTGCTAACGATGGGTGAGTACCTTAACGCAAAacggatttttc attttttttcgggattttcTAATTCTTGtcatgaaaaaaggaaaattatt aaatatcTTCATTAAGTATCTTTGCGGGGAAATCACTCAGTTATTTCAAT TCAACCTCGTATTTGATATCGTTTATATCTTTTTTCACCATAGTAACATC TCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaa agaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAA ACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTT TGCTCTATATGGCATCAAATTCgaaaggtattttttttttaaaattaccT GACTATGGCCCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAA AACTTTGTCAGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAAC TAAATTTCTAcgagaaaaaactatataagaacacaaggctacGATAGCTA AAATATTAAGGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGT TCTGGAATCcgtttcagaattttcaaagtAAGCTAttcttatattgttgt ttcttttaaactagtgttttttttctaaaataagcACCGcggtttaaatt tatttttcgctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGA CCCATTTTTATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcac attttcctttaaaatattTGCAGAGATTTGAGCAATTATATGGACCATAA TTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATG GCGGACAACCANaattttttttcggacactttggtgtgattttcggacaa atatgacggtctcaggcaaaaatcatagggttaaaaattaatgaaaattt tagctcgagaaaaaaagacctgttgtatatttttggaaagctctcaaaaa attaagattagagatatattgcaagtatagttGATTTCTGTACcttactc gagatattaacccttgaaaaccgtttttttcagccagaaacagctatttt gtccagtttttgcgctttttgaagctcaatatctcgagttaggtactgaa atcacctatacttgcaatatatctctaatccNTACCGGACAAACACATGA CTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTTTGCTCTAT ATGGCATCAAATTCgaaaggtattttttttttaaattacctgACTGTGGC CCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAAAACTTTGTC AGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAACTAAATTTCT AcgagaaaaaactatataagaacacaaggctacGATAGCTAAAATATTAA GGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGTTCTGGAATC cgtttcagaattttcaaagtAAGCTAttcttatattgttgtttcttttaa actagtgttttttttctaaaataagcACCGcggtttaaatttatttttcg ctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGACCCATTTTT ATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcacattttcctt taaaatattTGCAGAGATTTGAGCAATTATATGGACCATAATTATGAAAT TGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAAC CACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGC GGTCGTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAA CATCACAGACTGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGA AAAACCGAAGGGAAAATTTACTCTCAGAAATACACAAATTTCctatatac atgtttttttttatacaaaaatccgaaaacag

Coding sequence (CDS) from alignment at scaffold_161:136169..138600+

>TCONS_00049570 ID=TCONS_00049570|Name=TCONS_00049570|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_161:136169..138600+ (Clytia hemisphaerica)
ATGGATTGGCAGGTGTTTGGTATAATTTGGTTCAGTTTGCTAACGATGGT
AACATCTCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattg
gtgaaaagaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACC
GGACAAACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATA
TGATTTTGCTCTATATGGCATCAAATTCgaaagAGATTTGAGCAATTATA
TGGACCATAATTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGT
TTTGAAAATGGCGGACAACCACGTGCCCGGACAGGTGATTTGAAAGGAAC
AAACCTTAAACGAATCAGCGGTCGTGAATTTTATTATACGATGACTGTTG
ATATTAAAGCTGTTGTTAACATCACAGACTGAATGGATTGGCAGGTGTTT
GGTATAATTTGGTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTA
TTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGAT
GTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTC
TCACAAAGATATTATCCACTTGTACGTGAATATGATTTTGCTCTATATGG
CATCAAATTCgaaagAGATTTGAGCAATTATATGGACCATAATTATGAAA
TTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAA
CCACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAG
CGGTCGTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTA
ACATCACAGACTGAATGGATTGGCAGGTGTTTGGTATAATTTGGTTCAGT
TTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAATTGCATTC
TGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATTCGTCTGT
CGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATATTATCCA
CTTGTACGTGAATATGATTTTGCTCTATATGGCATCAAATTCgaaagAGA
TTTGAGCAATTATATGGACCATAATTATGAAATTGAAGTGATCGTCAATC
ATGACTGGTGTAGTTTTGAAAATGGCGGACAACCACGTGCCCGGACAGGT
GATTTGAAAGGAACAAACCTTAAACGAATCAGCGGTCGTGAATTTTATTA
TACGATGACTGTTGATATTAAAGCTGTTGTTAACATCACAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031439XLOC_031439Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049570-proteinTCONS_00049570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049570-exon-scaffold_161-1491911889:136169..136538TCONS_00049570-exon-scaffold_161-1491911889:136169..136538Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1510915933:136169..136538TCONS_00049570-exon-scaffold_161-1510915933:136169..136538Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1575043694:136169..136538TCONS_00049570-exon-scaffold_161-1575043694:136169..136538Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1491911889:136712..136895TCONS_00049570-exon-scaffold_161-1491911889:136712..136895Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1510915933:136712..136895TCONS_00049570-exon-scaffold_161-1510915933:136712..136895Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1575043694:136712..136895TCONS_00049570-exon-scaffold_161-1575043694:136712..136895Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1491911889:138283..138600TCONS_00049570-exon-scaffold_161-1491911889:138283..138600Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1510915933:138283..138600TCONS_00049570-exon-scaffold_161-1510915933:138283..138600Clytia hemisphaericaexon
TCONS_00049570-exon-scaffold_161-1575043694:138283..138600TCONS_00049570-exon-scaffold_161-1575043694:138283..138600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:136169..138600 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362879 0.786282 0.361404 0 0 0 0.000328434 2.14051 0 0 1.87023 2.2769 0.282953 0.965008 1.54878 2.09912 0 6.38282e-09 1.5914 2.23303 1.05141 0.521132 0.929176 1.25386 1.97259 1.38134 0.423939 0 0 0.932014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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