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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049573 ID=TCONS_00049573|Name=TCONS_00049573|organism=Clytia hemisphaerica|type=transcript|length=1882bp
AAATATTAAACGGATGGGATTAAGTAATTAAGACAAGGAAATACTTTGTT
GAGATTTACAGTGGGCAGGATGGACGAGGAAGGACGATTCTGTATGAGTT
GGGATGACTTTGCCCACTTTGATGGGGTTGGATAAGTATAGTTTATAAAA
TCAGCAACGTAAAAATGGCGGACACCAGCCGTAAACGTAAAACGAAGAAA
CAAGGAAAAACGCGTCGACGTAGCACCGCTTTTACGAAAGCACGTAAAAT
GCAACGCAAAGTCGTTGTATTGGGGTCACTGAAGTGCGGGAAGACGGCTT
TTGTAGAACGATTTGTCAACAACGCATTTACGGGTAATTACAAAACTACC
GTCGAAGATTTACACGTGCGTAGCTTCAAACATCAGGCACGTCACTACAC
GCTGCAAATTAGTGATCTAGCGTCGCCGTTTCAATTCCCTGCAATGAGGG
ACCTGCATATTCAAGGTGCGCAACTTATACTATTGTTGTATCAAATTGGA
GATGATAAATCGTATCAGGAAGCACGCAAGGTTTACGATATCGTACGCGA
AAAACGTACGGACGACGTTCCCGTGATATTAATAGGAACACAAAAAGATT
TGATTCCCATTAACGATTTAGACCCGGACGATTTTATACAAACATTATAT
CGTGATGAGATTGCAGCTACTGGTCATGTGCTGACGTCAGCGAAAACAGG
TGAAGGAATACAAGAAGCATTTGAAATGGGTTTGGATGCAGTACACGCTA
AAAAGAAGGGGGCTGAAGGGGAGAATGATGATGCAAAGTCAGATACTTCT
TCGATAGGATCTGATGAGAAATGCGTGATACTTTAAAATTAAGCTTGttc
attttgaaaactttttattacttctttagttgactctctctctgattcga
tcttcaagagaccaatttttttcttggaaTCAGAGAAAGATTCTAATAAT
AGAAATTCGAACTATCGATTTTGATGCTACATGATGGTATGATTGTGTTC
TGAAGAAGAACACAATCCCCACACAATCATACTCATTGATCATTGTTGTC
AGATTTCGTAGAATTGTAAGAACAAGCGAATCTCAGAATTTTAACACAGA
GACACATGATATCTTACATTGTCTGTCGACTACTTTTTTAATCGAGTGAA
AAGTTAAAATATAAGAGTACTTATTTttgatgagtttttttttttaaatt
atgagtcattctgagcctcatgtttcttaaaagtgtgtttcttaaaataa
aaaaacgtgtatatatttgggatttttaccaaatttttatcaaaattgat
aTTTCAAACTTAAATTTGTAATATTTCATTGGTCCTATTTACATCTTTTT
AAGGAAATTAAATATTaattaaagaaaaagttttcttgTGAATAGATAAA
TCAAATTGccataagtaagtaagtaagttacAGATTATTGCTCCTACTAA
AGATATAGCAAGGTTCAAATTGAAAATAGTGATGAATCGACAGATTCCAC
AATATATCAAAGTAAACGAGTCCTTCGTGTCGGGACTGAACCCAAGTGac
tttttttcatgaatctgctaataggaaatttgtataattttgaaagtaaa
ttttCCTTTCGGCTTTTCTGAACTTTTCAAAAGGGACACAAACATACAGT
CTGTAGTGGTAACTAACAACGTGGTTAGTTTTCAAACTGCTTTAATATCA
ACAGTCATAGTATAATAGAATTCACTTCCCCAATTTTCACTACCACTGAT
TCTCTTCAGGTTTGTTCCTTTCAAATCACCTGTCCGAGCACGTGGTTGTC
CGCCATTTTCAAAACTACACCAGTCATGATTGACGATCACTTCAATTTCA
TAATCATGGTCCATATAATTGCTCAAATCTCT Run BLAST on NCBI transcript from alignment at scaffold_161:142034..146356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049573 ID=TCONS_00049573|Name=TCONS_00049573|organism=Clytia hemisphaerica|type=transcript|length=4323bp|location=Sequence derived from alignment at scaffold_161:142034..146356+ (Clytia hemisphaerica)
AAATATTAAACGGATGGGATTAAGTAATTAAGACAAGGAAATACTTTGTT
GAGATTTACAGTGGGCAGGATGGACGAGGAAGGACGATTCTGTATGAGTT
GGGATGACTTTGCCCACTTTGATGGGGTTGGATAAGTATAGTTTATGTAG
GTGGCTCTATTTTTCAAATcgcaatttttctttataagaaccataAATTT
GACTGAGACTCAATTGTTTGCTCATTTTTccgttattttcaaaaattaac
ttTGCTTTGCTTCATTCACTTATTATCTTCAAAAAGGACTTAAAATCCGC
ATTTGAAATGTGAGATTTGTTCTTAAAAGTTTTGATCAAAATTGAATTCT
GTATTCttcataaaattgttcttagatTGAGAGTTTAAGGAAGTGTTTAG
TACCAGGAAATCAAGCTGGAGTGGCGCATATTTCATAACATCGTACAAAA
ATGCGTATATGAAGCATAACAAACCCATCTCAATCTAGGATTTTTAACAG
TGGGTTTCGTGGAGTAAGTCGGTGTATCGGTGAACCAATGGATTATAAGA
TCAACCTTTATTAGAAGACAACCCTTTTTCACagcccggtgggatttttt
cagccaatggggataaaagTAACGGGACTCAAACTCGATGCAACGATGGG
GATTGACATTCCTatcttttttatggctgggggtttcaattattttgtta
tCAACTCAGAAAGCATAATAGagcataatattttgaagtGAGGGTTGGTT
TAATTGATTATTTCGGTAGGGGCGAAGATTGGAGCATAATTTTTCTccgg
ggtcccagtgggtccgTGAGAATGGGGGTGTTGGAAGGAGGATGGTATAT
CTACTTTTTAACAAGTGTAAAAACACGTGAAAAATTGGTATAATACAATT
TATGATAGAAGGCAATTCTTGTGTGTTCAATCAGTCCTCGCCAAAGTCAG
tcaattttaagaattttcattttcaacgtAGAAGAAACTTAGAAAACGGA
ACTAAATTCCAAACCAGAAAATCTCATCGAAAAATCACCAACGGTCAATA
TTAGCAAAGCAATACCAATACCGGATTTTTTNAAACCAGCCAATCTCATC
GAAAAATCATCAAGGGTCAATATTAGCAAAGCAATACTAATATCGGATTT
TCCGTTACCTCTGGTTGCCTGGAAACAATATAAACTTCCTTCTTCTTCAA
ACTTTACTTGTTTTCTTTCAGTTAGGTTAAATAAATTTGAGTACAGGGAG
AGAAGATTAAGGCTAACTATAAAGAACTTACTAAAGtgtgtccagatata
attggcagtggaaacaagaatgcctttgtaacttttgatagtccgatata
atttcaaaaaatgtttttgcttcttttagataatcaaaagcgctatattt
taatatttttttttgttgaaaaattcgtgatttttagcggttacatttgc
gattgcaaaaattgaactttttttaatttttacaccagtggtagttcaac
cttaggttgagaagattgtcaaatttcaaggcaaacggaaaaagccttcg
gaagatatgggacccgaaataccccttggtagcatttttctgtgaaacat
caaatctccaaatttttaataaaaatgggGGTAGTGATGatataaaacag
tttttcaatcacatacagggtgtccctaattaaagtatcgagtcgaaaca
caactatgagtagaaagttttatgtgcgtgttcacaaaattgtattttaa
gctctccctcttttttgaactaccccggtggaggtcctataaattaacct
atgtttgttcgtccgtccgttcgtctgttaccaacctttctcaggattga
atcataggaatcttttgatttttggtataaaggtgcaaaatggtggtggc
caaaatgtgacggagcccgattttcgaaaaaagattttttggggtaaatt
tgggccaaaaaacggctaaaaaacggNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNcagatttttgcaaaaaaattttgttggctcaaaaaacgcat
gtttatctataagaatcactattaataagcatacatcaatgttcttattc
aaattactcaatattggttcattgttttttttctgaatttttgcatgaaa
gtaggtaaaagatggctcaagcagatttatCAGCCAACCTTGTCTAGGTT
TTGAAACTTTCACCTAGGTTACTGTTATGGGGTCAGCCTGGGATTTCTAA
CTCCTATTATTTGAAATATGTAAATTAGATTGAAAAGATATTagcttgaa
aattcaaagaaaataattatttgttCGAAAAACAAATACCTTTTTCGatt
ttattgtaaatttgatcttttttgaTTCGTTTTGTAGAAAATCAGCAACG
TAAAAATGGCGGACACCAGCCGTAAACGTAAAACGAAGAAACAAGGAAAA
ACGCGTCGACGTAGCACCGCTTTTACGAAAGCACGTAAAATGCAACGCAA
AGTCGTTGTATTGGGGTCACTGAAGTGCGGGAAGACGGCTTTTGTAGAAC
GATTTGTCAACAACGCATTTACGGGTAATTACAAAACTACCGTCGAAGAT
TTACACGTGCGTAGCTTCAAACATCAGGCACGTCACTACACGCTGCAAAT
TAGTGATCTAGCGTCGCCGTTTCAATTCCCTGCAATGAGGGACCTGCATA
TTCAAGGTGCGCAACTTATACTATTGTTGTATCAAATTGGAGATGATAAA
TCGTATCAGGAAGCACGCAAGGTTTACGATATCGTACGCGAAAAACGTAC
GGACGACGTTCCCGTGATATTAATAGGAACACAAAAAGATTTGATTCCCA
TTAACGATTTAGACCCGGACGATTTTATACAAACATTATATCGTGATGAG
ATTGCAGCTACTGGTCATGTGCTGACGTCAGCGAAAACAGGTGAAGGAAT
ACAAGAAGCATTTGAAATGGGTTTGGATGCAGTACACGCTAAAAAGAAGG
GGGCTGAAGGGGAGAATGATGATGCAAAGTCAGATACTTCTTCGATAGGA
TCTGATGAGAAATGCGTGATACTTTAAAATTAAGCTTGttcattttgaaa
actttttattacttctttagttgactctctctctgattcgatcttcaaga
gaccaatttttttcttggaaTCAGAGAAAGATTCTAATAATAGAAATTCG
AACTATCGATTTTGATGCTACATGATGGTATGATTGTGTTCTGAAGAAGA
ACACAATCCCCACACAATCATACTCATTGATCATTGTTGTCAGATTTCGT
AGAATTGTAAGAACAAGCGAATCTCAGAATTTTAACACAGAGACACATGA
TATCTTACATTGTCTGTCGACTACTTTTTTAATCGAGTGAAAAGTTAAAA
TATAAGAGTACTTATTTttgatgagtttttttttttaaattatgagtcat
tctgagcctcatgtttcttaaaagtgtgtttcttaaaataaaaaaacgtg
tatatatttgggatttttaccaaatttttatcaaaattgataTTTCAAAC
TTAAATTTGTAATATTTCATTGGTCCTATTTACATCTTTTTAAGGAAATT
AAATATTaattaaagaaaaagttttcttgTGAATAGATAAATCAAATTGc
cataagtaagtaagtaagttacAGATTATTGCTCCTACTAAAGATATAGC
AAGGTTCAAATTGAAAATAGTGATGAATCGACAGATTCCACAATATATCA
AAGTAAACGAGTCCTTCGTGTCGGGACTGAACCCAAGTGactttttttca
tgaatctgctaataggaaatttgtataattttgaaagtaaattttCCTTT
CGGCTTTTCTGAACTTTTCAAAAGGGACACAAACATACAGTCTGTAGTGG
TAACTAACAACGTGGTTAGTTTTCAAACTGCTTTAATATCAACAGTCATA
GTATAATAGAATTCACTTCCCCAATTTTCACTACCACTGATTCTCTTCAG
GTTTGTTCCTTTCAAATCACCTGTCCGAGCACGTGGTTGTCCGCCATTTT
CAAAACTACACCAGTCATGATTGACGATCACTTCAATTTCATAATCATGG
TCCATATAATTGCTCAAATCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049573-exon-scaffold_161-1491911889:142034..142179 | TCONS_00049573-exon-scaffold_161-1491911889:142034..142179 | Clytia hemisphaerica | exon |
| TCONS_00049573-exon-scaffold_161-1510915933:142034..142179 | TCONS_00049573-exon-scaffold_161-1510915933:142034..142179 | Clytia hemisphaerica | exon |
| TCONS_00049573-exon-scaffold_161-1575043694:142034..142179 | TCONS_00049573-exon-scaffold_161-1575043694:142034..142179 | Clytia hemisphaerica | exon |
| TCONS_00049573-exon-scaffold_161-1491911889:144621..146356 | TCONS_00049573-exon-scaffold_161-1491911889:144621..146356 | Clytia hemisphaerica | exon |
| TCONS_00049573-exon-scaffold_161-1510915933:144621..146356 | TCONS_00049573-exon-scaffold_161-1510915933:144621..146356 | Clytia hemisphaerica | exon |
| TCONS_00049573-exon-scaffold_161-1575043694:144621..146356 | TCONS_00049573-exon-scaffold_161-1575043694:144621..146356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:142034..146356 + |
Blast
BLAST of TCONS_00049573 vs. Swiss-Prot (Human)
Match: RAP1B (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-16 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 3
Query: 258 KVVVLGSLKCGKTAFVERFVNNAFTGNYKTTVEDLHVRSFKHQARHYTLQISDLASPFQFPAMRDLHIQGAQLILLLYQIGDDKSYQEARKVYD-IVREKRTDDVPVILIGTQ 593
K+VVLGS GK+A +FV F Y T+ED + + + A+ L+I D A QF AMRDL+++ Q L+Y I ++ + + + + I+R K TDDVP+IL+G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117
The following BLAST results are available for this feature:
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