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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049590 ID=TCONS_00049590|Name=TCONS_00049590|organism=Clytia hemisphaerica|type=transcript|length=5729bpRun BLAST on NCBI protein sequence of TCONS_00049590-protein >TCONS_00049590-protein ID=TCONS_00049590-protein|Name=TCONS_00049590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1230bp MLLKKYFYFTLSLILTLLQIASCKNYPKRYGHINKRARTRNASRGRQSIVRun BLAST on NCBI transcript from alignment at scaffold_161:59572..83138- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049590 ID=TCONS_00049590|Name=TCONS_00049590|organism=Clytia hemisphaerica|type=transcript|length=23567bp|location=Sequence derived from alignment at scaffold_161:59572..83138- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_161:59572..83138- >TCONS_00049590 ID=TCONS_00049590|Name=TCONS_00049590|organism=Clytia hemisphaerica|type=CDS|length=88632bp|location=Sequence derived from alignment at scaffold_161:59572..83138- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049590 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 236.113 bits (601), Expect = 4.945e-62 Identity = 212/673 (31.50%), Postives = 307/673 (45.62%), Query Frame = 3
Query: 1830 PHSTTSYQTVVDHGEVHEHPCLNGGVYISMVHGTYQCICPVGYIGKTCQ-EKNYCHPCPCKNKGDCTQTKEEPFYKCRCKRGFYGIDCEAK-DPCYPNPCRNQGVCTHDGTIASCVCPRRFRGKRCET-LNNCDPDPCANGGRCVELKGEGKFQCECLPMYRGALCR-KRSFCFTNPCRNGGTCREGEEHFVCDCPKGFSGPACADRM--CQPNPCMNGGTCVEDGDRFKCVCLPWTTGNLCE-ETRPCLTNPCMHGGRCIDSFSGFHWSFGPMQYYCTCKRPFKGLNCEHH----SCQNCHKNAHCEVD-----RCVCDEGFEGNGEQCRKMDDTCRPNPCLNKGICIP-VADYCQGNTCGFKXXXXXXXXXXXXKHKNPCEPDPCMNGECIPLPEGEYRCNCEVGYKGDQC-----------SERDACHPNPCQHNGVCKDDGGKASCECVGMWKGSFCKECGCPTKSLHGSPQMMCSPQGQCICQHGYT-PDMKTGVCVKQVGNYEALK------PCRSSPCEHGGRCIDVSDSDFRCDCKLGYSGKVCQHK-SPCQPGP-CLNDGICLEKDGKFLGCKCRPGYLPPMCIKPELQDGPCRPNPCLHEGA--CIINGDAYDCHCPERYTGPNCN--VDKCAK--CDHNAECILGK-------CKCRPGYIG 3698
PH + Y V E +PC++G + Y+C+C G++G C+ +KN C PC+N G C Y+C CK+GF G +C+ D C NPC NQG C D + +C C + GK C+T L C P+PC N C E + C C P ++G C C + PC N G C + ++C+CP GFSG C + + C NPC NGG+C++ + F C+CLP TG+ C+ + CL+ PC +GG C D + Y C C+ F G++CE++ + +C C VD C+C GF G C + C +PCLN+G C+ + Y G+ + N C PC N + E +C C G+ G C S R + CQH+GVC + G C+C + GS+C+E +P CQHG T D G + V Y+ + C++ PC++GG CID+ + F+C C G G +C+ C GP CLN G C+++ G + C+C PG+ C E C NPC EG+ CI + Y C C +TG +C VD C + C + C + C+C PG+ G
Sbjct: 712 PHHPSCYSQV---NECLSNPCIHGNCTGGL--SGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNG--YRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVN---------SYTCKCQAGFDGVHCENNINECTESSCFNGGTC-VDGINSFSCLCPVGF--TGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLV-------NLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEE---QLDECASNP-----------CQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNH-FKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGY-SCRCLPGFAGERC---EGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSG 1339 HSP 2 Score: 219.55 bits (558), Expect = 5.036e-57 Identity = 210/693 (30.30%), Postives = 301/693 (43.43%), Query Frame = 3
Query: 1881 EHPCLNGGVYISMVHGTYQCICPVGYIGKTCQEKNYCHPCPCKNKGDCTQTKEEPFYKCRCKRGFYGIDCEAK-DPC-YPNPCRNQGVCTHDGTIASCVCPRRFRGKRCETLNN-CDPDPCANGGRCVELKGEGKFQCECLPMYRGALC-RKRSFCFTNPCRNGGTCREGEEHFVCDCPKGFSGPACADR----MCQPNPCMNGGTCVEDGDRFKCVCLPWTTGNLCEE-TRPCLTNPCMHGGRCIDSFSGFHWSFGPMQYYCTCKRPFKGLNCEHHSC---QNCHKNAHCEVD------RCVCDEGFEGNGEQCRKMDDTCRPNPCLNKGICIPVADYCQGNTCGFKXXXXXXXXXXXXKHKNPCEPDPCMNGECIPLPEGEYRCNCEVGYKGDQCS-ERDACHPNPCQHNGVCKDDGGKASCECVGMWKGSFCKECGCPTKSLHGSPQMMCSPQGQCICQHGYT-----PDMKTGVCVKQVGNYEALKPCRSSPCEHGGRCIDVSDSDFRCDCKLGYSGKVCQHK-SPCQPGPCLNDGICLEKDGKFLGCKCRPGYLPPMCIKPELQDGPCRPNPCLHEGACIINGDAYDCHCPERYTGPNC--NVDKCAK--CDHNAECILG----KCKCRPGYIGNGYTCEREMCDAT-CVEWSTCING----QCVCNPGYAHVS-----NKCVPTPNI 3830
PCLNGG + TY+C C VG+ GK CQ + C PC N CT + + C+C GF G CE + C P C++ G C + C CP+ F G+ C++L C P PC NGG C + G+ F+C CLP + G+ C R C + C+NGG C +G + C CP ++G C + + QPN C NGGTC + CVC+ +G+ C E C C G CID + F C C GL C CHK A C+ + C C +G++ G C + D C + NPCE G+C+ +G + C C GY G +C + + CH +PCQ++ C D G +C C+ +KG C+ ++ C GQC+ + P VC + + C S+PC +G +CID + + C C G++G +C+ C P PC + G C + + C C PGY+ +C Q C +PCL++G CI + Y C+C +G NC N D CA C H C+ G C C PG+ G + + C + C + +TCING +C+C G H S N+C+ P I
Sbjct: 112 SRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQ--FSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQ-TGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFS---------CMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYK--GADCTEDVDEC------------------------------------AMANSNPCE----HAGKCVNT-DGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCE------LEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDD------CSSTPCLNGAKCIDHPNG-YECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYT-CICNPGYMGAICSD---QIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHGI-CMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCI 730 HSP 3 Score: 144.821 bits (364), Expect = 2.645e-34 Identity = 160/563 (28.42%), Postives = 223/563 (39.61%), Query Frame = 3
Query: 1884 HPCLNGGVYISMVHGTYQCICPVGYIGKTCQ-EKNYCHPCPCKNKGDCTQTKEEPFYKCRCKRGFYGIDCEAK-DPCYPNPCRNQGVCTHDGTIASCVCPRRFRGKRC-ETLNNCDPDPCANGGRCVELKGEGKFQCECLPMYRGALCRKR-SFCFTNPCRNGGTCREGEEHFVCDCPKGFSGPAC----------ADR--MCQPNPCMNGGTCVEDGDRFKCVCLPWTTGNLCEE-TRPCLTNPCMHGGRCIDSFSGFHWSFGPMQYYCTCKRPFKGLNCEHHSCQNCHKNAHCEVDRCVCDEGFEGNGEQCRKMDDTCRPNPCLNKGICIPVADY----CQGNTCGFKXXXXXXXXXXXXKHKNPCEPDP-CMNGECIPLPEGEYRCNCEVGYKGDQCS-ERDACHPNPCQHNGV--CKDDGGKASCECVGMWKGSFCKECGCPTKSLHGSPQMMCSPQGQCICQHGYTPDMKTGVCVKQVGNYEALKPCRSSPCEHGGRCIDVSDSDFRC------DCKLGYSGKVCQHKSPCQPGPCLNDGICLEKDGKFLGCKCRPGY 3479
+PC NGG + V+ T+ C+C G+ G CQ + N C PCKN G C+ Y C+C+ GF G+ CE + C + C N G C SC+CP F G C +N C PC N G CV+ G G ++C C Y G C+ + C +PC+N GTC + + C CP G++G C A R + + C + G C+ G+ C C TG+ CEE C +NPC HG C D G Y C C ++G+NCE+ EVD C + PC N G CI + ++ C T G ++ + C P C+NG G Y C C G+ G++C + + C NPC G C C C + G C+ + PQM C G C PD C C C G +C+ + S RC DC+ G + CQH C P ++ + C+C P +
Sbjct: 918 NPCQNGGSCMDGVN-TFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNS--YTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVD--GLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGG---------YRCECVPGYQGVNCEY------------EVDEC--------------------QNQPCQNGGTCIDLVNHFKCSCPPGTRGL----------LCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCE------TFVDVCPQMPCLNGGTCAVASNM-PDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTA-SGPRCFCPSPRDCESGCASSPCQHGGSCHP----------QRQPPYYSCQCAPPF 1406 HSP 4 Score: 142.51 bits (358), Expect = 1.462e-33 Identity = 141/458 (30.79%), Postives = 199/458 (43.45%), Query Frame = 3
Query: 1872 EVHEHPCLNGGVYISMVHGTYQCICPVGYIGKTC-QEKNYCHPCPCKNKGDCTQTKEEPFYKCRCKRGFYGIDCEAK-DPCYPNPCRNQGVCTHDGTIASCVCPRRFRGKRCETLN-NCDPDP----------CANGGRCVELKGEGKFQCECLPMYRGALCRKR-SFCFTNPCRNGGTCREGEEHFVCDCPKGFSGPACADRM--CQPNPCMNGGTCVEDGDRFKCVCLPWTTGNLCEE-TRPCLTNP-CMHGGRCIDSFSGFHWSFGPMQYYCTCKRPFKGLNCEH--HSCQNCHKNAHCEVD--------RCVCDEGFEGNGEQCRKMDDTCRPNPCLNKGICIPVADYCQGNTC----GFKXXXXXXXXXXXXKHKNPCEPDPCMNGE-CIPLPEGEYRCNCEVGYKGDQCSERD---ACHPNPCQHNGVC--KDDGGKASCECVGMWKGSFCK 3131
E E C NGG + ++ ++ C+CPVG+ G C E N C PC N+G C Y+C C G+ G +C+ + C +PC+N+G C + C+CP + G C+ N +CD C + G C+ C+C Y G+ C ++ C +NPC++G TC + + C+C G+ G C + CQ PC NGGTC++ + FKC C P T G LCEE C P C++GG+C+D G Y C C F G CE + C + ++ +D CVC F G C D C PCLN G C ++ G C GF + ++ C C GE C+ G RC C S RD C +PCQH G C + SC+C + GS C+
Sbjct: 990 ECTESSCFNGGTCVDGIN-SFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGT--YRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCI--NAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGG---------YSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAF--TGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFS----------GARCQSSCGQVKCRKGEQCVHTASGP-RCFCP--------SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCE 1412 HSP 5 Score: 84.3445 bits (207), Expect = 6.696e-16 Identity = 83/296 (28.04%), Postives = 113/296 (38.18%), Query Frame = 3
Query: 2931 DPCMN-GECIPLPEGEYRCNCEVGYKGDQCSERDACHPNPCQHNGVCKDDG--GKASCECVGMWKGSFCKECGCPTKSLHGSPQMMCSPQGQCICQHGYTPDMKTGVCVKQVGNYEALKPC-RSSPCEHGGRCIDVSDSDFRCDCKLGYSGKVCQHKSPCQPGPCLNDGICLEKDGKFLGCKCRPGYLPPMCIKPELQDGPCR-PNPCLHEGACIINGDAYDCHCPERYTGPNCNVDKC----AKCDHNAEC-----ILGKCKCRPGYIGNGYTCEREMCDA---TCVEWSTCING 3767
+PC+N G C+ G C C G+ G+ C RD C N CQ+ G C GKA+C C + G C+ Y PC S PC +GG C +S + C C++G++GK CQ C PC N C +F CKC G+ C E C P C H G C+ +Y C CP+ +TG C+ + C + C +C C PG+ G TCER + D C C++G
Sbjct: 33 EPCVNEGMCVTYHNGTGYCKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQ--------------------------------------------YSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQF-SCKCLTGFTGQKC---ETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGF--EGSTCERNIDDCPNHRCQNGGVCVDG 278 The following BLAST results are available for this feature:
BLAST of TCONS_00049590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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