|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049912 ID=TCONS_00049912|Name=TCONS_00049912|organism=Clytia hemisphaerica|type=transcript|length=1697bp
aaactttgaGTAAAATCCAGCATcaagtttcaaatttcaattcaaaGAAT
GAGGGAATAAATATAGATTGTACAAGGAAGAAAGTTGAAGAACATGCTTT
GAACTCTGCAGTTGGCTATAAtgaaacaagcgatacttttatggacctac
ctgtttataaaacgaataatgaAAGTTTAATGAAGGcaatgtaaaaacaa
aaactgaataatttaaaatttagcAAGTTGGTGCCATAACTTCTTGAACA
GATTTTTAACAAAGTCCAAAgtcattttttggcattttttgggctcaaat
tggcccaaaaactttttttctcaatgctACTAAGTTCCTTGATgctacaa
aaacattattgtgaaacaaaaacaaaaattgcacAAGATGAAGGACTGTT
TCTATTATGTTTCATGTTTGACACGTGATCAATGGTTACTGCACATGCGA
ATgaggttcgaatcccactcgcagcggtttaATTGTTAAGTAAACAAATC
TTCGCCCAGATCAACCcttgccatgtgaggggaattgggtagtcagttca
agatGCTGACGGGCCGCTTTGAAACGTCAATAGTTGCTAGAATGGGCCAC
ACAGCCTCCTGCAACTCGACCAAATGGTaatagaaaatcaaatttcatat
ttccgGAACTTGCTTCTTCTACTGCCAATGTTGAAGCCACCTGTTGGTCT
TTTCATCCCACTGTTTGATGATGAATTGGCCAAAGTTGATACCATGGAAG
GGTTCAATGCACTACTGTTGTTGGTGGTGGAATTTTCACAAGCtgagtca
gcattttttgaagaTGAAGATCCAGAAAGCttgtctttttcatttttatc
atctAAACTACCTTTAGTCAGTGCGAGTTGTTCATTTTTCATACATCCCC
AGTGGAGTGAGGTGTGAGTTGCTTTAGAAAGTTCAGTCCATTTCTCATAA
GTAACACATAAACCAGAATTCATCCATTTGTCATAATCTTTACGTAGCAA
ATCATCACTCAATACTTTATAAGCTTTAGTTATCCTGGAAAAGAATTTAC
AAACTCATTTTAAGACTCATTTTAAGGAActcattgggctcttccagaaa
atttttgtacatggggggggtggaggatacaTTGGATATTTTGTTTGGGA
GGggaggggtagtgaaaaatctgcaaaatttgccttgttttgagGGCCAA
TTTTctctgtttaggggtaattttgaatgtccggggggtcaactgatgct
tgttcaGGGGGTAAGAACTGTTGTCCGGGAGGGGGGGTTCATAATCACTA
TGGTCGGGgtgtaaatttctaaaaaacgTTATATCCTCAACCCCCCCata
tatattcaaattttttctggaaaagcccattttaacAAGAACTTATTTTA
CTTGGTGAATTTCAGGTCGACGTTTAGTCCGAATCTAGCGCTCCACTGAT
TCATATATTTAATTGAATTGAAGGGTCTAATATTGTATTATTGCATCTAA
TTTTCTGGGGGTCCATAACTGTAATCAGCAAATTTGTCAAACAAACAAAG
TCTCTATGTACATGTGACTCACTGGCGACAAAATgtatgaaaacattaaa
aaagctctaaaatcTGACGTAAAACAGAAGACACCAGTTGActtgatatc
tctaaaactggacaCAGTTTAGCAATTAGCCAATCTAGTGTGTAAAG Run BLAST on NCBI transcript from alignment at scaffold_167:680349..682248+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049912 ID=TCONS_00049912|Name=TCONS_00049912|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_167:680349..682248+ (Clytia hemisphaerica)
aaactttgaGTAAAATCCAGCATcaagtttcaaatttcaattcaaaGAAT
GAGGGAATAAATATAGATTGTACAAGGAAGAAAGTTGAAGAACATGCTTT
GAACTCTGCAGTTGGCTATAAtgaaacaagcgatacttttatggacctac
ctgtttataaaacgaataatgaAAGTTTAATGAAGGcaatgtaaaaacaa
aaactgaataatttaaaatttagcAAGTTGGTGCCATAACTTCTTGAACA
GATTTTTAACAAAGTCCAAAgtcattttttggcattttttgggctcaaat
tggcccaaaaactttttttctcaatgctACTAAGTTCCTTGATgctacaa
aaacattattgtgaaacaaaaacaaaaattgcacAAGATGAAGGACTGTT
TCTATTATGTTTCATGTTTGACACGTGATCAATGGTTACTGCACATGCGA
ATgaggttcgaatcccactcgcagcggtttaATTGTTAAGTAAACAAATC
TTCGCCCAGATCAACCcttgccatgtgaggggaattgggtagtcagttca
agatGCTGACGGGCCGCTTTGAAACGTCAATAGTTGCTAGAATGGGCCAC
ACAGCCTCCTGCAACTCGACCAAATGGTaatagaaaatcaaatttcatat
ttccgGAACTTGCTTCTTCTACTGCCAATGTTGAAGCCACCTGTTGGTCT
TTTCATCCCACTGTTTGATGATGAATTGGCCAAAGTTGATACCATGGAAG
GGTTCAATGCACTACTGTTGTTGGTGGTGGAATTTTCACAAGCtgagtca
gcattttttgaagaTGAAGATCCAGAAAGCttgtctttttcatttttatc
atctAAATGATAtataaatagaaaagaaaaagtcattttATTGAATAATA
CCATATTTCTTGTATAATCAGAAGTGGCTGCCAGATACGTTTAGAGTATG
TTAACTCACTTATGAAGCTTATTGCTCAAGAGTATGTAACTGAGCCTCTC
TAAACCCCACATGTATCGATCAAATGCtcacaaaataaacaaagattatA
CACTCCTACACTACCTTTAGTCAGTGCGAGTTGTTCATTTTTCATACATC
CCCAGTGGAGTGAGGTGTGAGTTGCTTTAGAAAGTTCAGTCCATTTCTCA
TAAGTAACACATAAACCAGAATTCATCCATTTGTCATAATCTTTACGTAG
CAAATCATCACTCAATACTTTATAAGCTTTAGTTATCCTGGAAAAGAATT
TACAAACTCATTTTAAGACTCATTTTAAGGAActcattgggctcttccag
aaaatttttgtacatggggggggtggaggatacaTTGGATATTTTGTTTG
GGAGGggaggggtagtgaaaaatctgcaaaatttgccttgttttgagGGC
CAATTTTctctgtttaggggtaattttgaatgtccggggggtcaactgat
gcttgttcaGGGGGTAAGAACTGTTGTCCGGGAGGGGGGGTTCATAATCA
CTATGGTCGGGgtgtaaatttctaaaaaacgTTATATCCTCAACCCCCCC
atatatattcaaattttttctggaaaagcccattttaacAAGAACTTATT
TTACTTGGTGAATTTCAGGTCGACGTTTAGTCCGAATCTAGCGCTCCACT
GATTCATATATTTAATTGAATTGAAGGGTCTAATATTGTATTATTGCATC
TAATTTTCTGGGGGTCCATAACTGTAATCAGCAAATTTGTCAAACAAACA
AAGTCTCTATGTACATGTGACTCACTGGCGACAAAATgtatgaaaacatt
aaaaaagctctaaaatcTGACGTAAAACAGAAGACACCAGTTGActtgat
atctctaaaactggacaCAGTTTAGCAATTAGCCAATCTAGTGTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049912-exon-scaffold_167-1491911889:680349..681204 | TCONS_00049912-exon-scaffold_167-1491911889:680349..681204 | Clytia hemisphaerica | exon |
| TCONS_00049912-exon-scaffold_167-1510915933:680349..681204 | TCONS_00049912-exon-scaffold_167-1510915933:680349..681204 | Clytia hemisphaerica | exon |
| TCONS_00049912-exon-scaffold_167-1575043694:680349..681204 | TCONS_00049912-exon-scaffold_167-1575043694:680349..681204 | Clytia hemisphaerica | exon |
| TCONS_00049912-exon-scaffold_167-1491911889:681408..682248 | TCONS_00049912-exon-scaffold_167-1491911889:681408..682248 | Clytia hemisphaerica | exon |
| TCONS_00049912-exon-scaffold_167-1510915933:681408..682248 | TCONS_00049912-exon-scaffold_167-1510915933:681408..682248 | Clytia hemisphaerica | exon |
| TCONS_00049912-exon-scaffold_167-1575043694:681408..682248 | TCONS_00049912-exon-scaffold_167-1575043694:681408..682248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:680349..682248 + |
Blast
The following BLAST results are available for this feature:
|
