TCONS_00049924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049924
Unique NameTCONS_00049924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049924 ID=TCONS_00049924|Name=TCONS_00049924|organism=Clytia hemisphaerica|type=transcript|length=342bp
GATGAAGGGATTGGAGAGTGAGTTACTGGAACAAATCAACACATTGAGAG
AACAACACAAGAAAGAAGAGGCAGCTCACAAAATAGTTTTCACCAAAAAA
CTGGCTCAggtttttttacactttcattttttttgatttccaaaagaAGG
TATCATCTACCGAACATAGTAAATAACTTTTTCGAGTTGAGAAATCTCCT
TTTGACGTCTTAATTTgagacttatgacgtcatattCGTCTTAACTCAGg
cttttgtaactcgggtttttgtaactcgggttttccgggcctcccTAACA
TAATATGGTATGGAGAAATGACTTATTATGGTTGATTCTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_167:908594..908935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049924 ID=TCONS_00049924|Name=TCONS_00049924|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_167:908594..908935+ (Clytia hemisphaerica)
GATGAAGGGATTGGAGAGTGAGTTACTGGAACAAATCAACACATTGAGAG
AACAACACAAGAAAGAAGAGGCAGCTCACAAAATAGTTTTCACCAAAAAA
CTGGCTCAggtttttttacactttcattttttttgatttccaaaagaAGG
TATCATCTACCGAACATAGTAAATAACTTTTTCGAGTTGAGAAATCTCCT
TTTGACGTCTTAATTTgagacttatgacgtcatattCGTCTTAACTCAGg
cttttgtaactcgggtttttgtaactcgggttttccgggcctcccTAACA
TAATATGGTATGGAGAAATGACTTATTATGGTTGATTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031645XLOC_031645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049924-exon-scaffold_167-1491911889:908594..908935TCONS_00049924-exon-scaffold_167-1491911889:908594..908935Clytia hemisphaericaexon
TCONS_00049924-exon-scaffold_167-1510915933:908594..908935TCONS_00049924-exon-scaffold_167-1510915933:908594..908935Clytia hemisphaericaexon
TCONS_00049924-exon-scaffold_167-1575043694:908594..908935TCONS_00049924-exon-scaffold_167-1575043694:908594..908935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:908594..908935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87467	0	0.46053	1.70732	0.366941	1.73842	1.85077	1.31717	0	0.368612	0	0	0.264103	0.248695	15.6327	11.5113	1.89168	0.887996	0.28356	0.853546	0	0	0	0.85698	0.305446	0.259251	0	0	0.42018	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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