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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049934 ID=TCONS_00049934|Name=TCONS_00049934|organism=Clytia hemisphaerica|type=transcript|length=3438bpRun BLAST on NCBI protein sequence of TCONS_00049934-protein >TCONS_00049934-protein ID=TCONS_00049934-protein|Name=TCONS_00049934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp MSQTRTLTKPPVQPSRTHDYLYDPLYSLSSERDHARATFRATTNVSRIRRRun BLAST on NCBI transcript from alignment at scaffold_167:1058137..1077553+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049934 ID=TCONS_00049934|Name=TCONS_00049934|organism=Clytia hemisphaerica|type=transcript|length=19417bp|location=Sequence derived from alignment at scaffold_167:1058137..1077553+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1058137..1077553+ >TCONS_00049934 ID=TCONS_00049934|Name=TCONS_00049934|organism=Clytia hemisphaerica|type=CDS|length=41256bp|location=Sequence derived from alignment at scaffold_167:1058137..1077553+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049934 vs. Swiss-Prot (Human)
Match: CFA91 (Cilia- and flagella-associated protein 91 OS=Homo sapiens GN=MAATS1 PE=1 SV=2) HSP 1 Score: 286.189 bits (731), Expect = 1.699e-83 Identity = 149/303 (49.17%), Postives = 206/303 (67.99%), Query Frame = 3
Query: 738 KMSQTR----TLTKPPVQPSRTHDYLYDPLYSLSSERDHARATFRATTNVSRIRRIPMFRDMFSSLQHFPNSQVQIDAHDPVPSFMPRQWRGYSDQAREALVRYTKFNYDPSVQVPSKTFEQTDVSGSDRYXXXXXXXXXXLQQVPPEVVLQANSG-PYTNTDVIAERAPTPLTRNVMVQTDYRESETQTDPYTPECVAQPGSSPELLTVANLSWGRGLPAGLAEVEMIERARIKRAWEATLPPLNDLEQLDERRKMMDEQERKEWAFRESEIEKLQAIKIQVLKKMLQNREQRNNEMNTKRL 1631
++SQTR + + +R +D+LYDPL+ +SSE+DH +A +AT SR+R++P F+ MFS+L H+P + DPVP F+ R+W+G+ ++ REAL + T D S Q+P + +E +V+G +RY++F RP +PF QQ+P VV + PYT + P V QTDYR+++ QTDPY+ E V S PELLT+A L+WGRGLPAG AEVEMIERAR KRAWEA+LP L+D Q ++RRKMM+E ERKEWAFRE EIEKLQ I+++VLK++L+ RE+ NE+N K L
Sbjct: 15 QVSQTRYRERSRAGSHISSNRAYDFLYDPLFIVSSEKDHTQANIQATLIRSRLRKVPRFKTMFSNLIHYPRYSLYWSKSDPVPPFISREWKGHKEKHREALRQLT--TTDASFQMPKEVYEDPEVTGKNRYKYFERPFLPFFQQMPFNVVYAVSKAEPYTFPPTSTKHLSIPSKSTVGTQTDYRDADVQTDPYSAEYVVCQDSIPELLTLATLTWGRGLPAGQAEVEMIERAREKRAWEASLPALSDTSQFEKRRKMMNEMERKEWAFREQEIEKLQEIRLEVLKELLRKREENQNEVNMKHL 315 HSP 2 Score: 248.825 bits (634), Expect = 1.461e-70 Identity = 155/251 (61.75%), Postives = 194/251 (77.29%), Query Frame = 3
Query: 2136 QAEEDQELAVVFLQKVIRGRAVQNMMYDGKEKRRELIDELRSTHALQQAEISLKKKEKQSILQLQRQEKLTEHYESNVDEIIGELEGSCLGDMLDFLSKELVRFQEERRIHAFAMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFKQVIGVHQETVESYLTNIISGAIETTAEDQARREVEEMAAKINQVAHDMEASRTQLQSEEIVAELVTSFLLPEVQKISMRENVKRNQRKNLLAAHRIIHDEVDDI 2888
Q ++ ++AV++LQK++RGR VQNMM++GKEKR ELI ELR+ HALQ+ E +KK EKQ L LQRQ L EH S V+ + LEG L DM DFLSKELVR QEERRIHAF MLAERQRR+REAEESGRRQ+E++R REEDEIFK+V+ VH T+ SYL +II TAE+QAR E+E+MA KIN +A++ME+ RT LQSEEIVAELV SFL+PEVQK ++E V+ QRK++LAAH+IIH + +
Sbjct: 323 QEGKEAKMAVIYLQKLLRGRVVQNMMFEGKEKRLELIQELRTCHALQEDEKLVKKAEKQVTLALQRQRNLHEHKVSLVENHLAGLEGRALADMFDFLSKELVRLQEERRIHAFVMLAERQRRVREAEESGRRQVEKQRLREEDEIFKEVVKVHHSTISSYLEDIILNTEANTAEEQARAEIEKMAEKINDIAYEMESRRTYLQSEEIVAELVYSFLIPEVQKYFVKEKVRNAQRKHILAAHQIIHSYTESM 573 The following BLAST results are available for this feature:
BLAST of TCONS_00049934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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