|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049958 ID=TCONS_00049958|Name=TCONS_00049958|organism=Clytia hemisphaerica|type=transcript|length=500bp
AAGAAGTGTCGGAGGATATTGAAAACATCAGTGAAGATTTCTAAAGGTAT
ATTACGATTTGAGAAGCGCAAACGATGTACGCCTTGAAGCTGAAGACAGC
GCTGAGAAATGCANTATTACGATTTGAGAAGCGCATACGATGTACGCCTT
GAAGCTGAAGACAGCGCTGAGAAATGCAGTATCAATCACTTCAAAGAGAT
GGTCAAGCGGCGCCATACCCTTTGATCCTACCATCGTCCTTGGTAATGTT
GTGCATCCTAAGAAATTTGCACCATTAAAAAACATTGCAGTCTATCAGCA
AGAGATTGACGGAGAAGAAGATGCTATGCAGGATAACTTACGCGCAATAA
GAAGCCTTCAGATGCTTGCTATAGAGCTTGGCTATAGTAAAGAAGATAAA
GCTAAAGACGCGAAGTTAAGCCAGTCAATGAAAATGCTGCACCAAAACGT
GGATTCGGCTGCTACAAAGTATGCAGAGAAATTGCAAACAAATCTTCCCC Run BLAST on NCBI transcript from alignment at scaffold_167:1289685..1291816+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049958 ID=TCONS_00049958|Name=TCONS_00049958|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at scaffold_167:1289685..1291816+ (Clytia hemisphaerica)
AAGAAGTGTCGGAGGATATTGAAAACATCAGTGAAGATTTCTAAAGGTAT
TTCAGTAACTatgaattttttgtaaaatacttTAGTCCTAGCTAGCGTAA
TAAATTCTGGTAAAGACTTTTATCTTGGGAAAGGGGAGGGGGGTGTTGAT
GGCCTGAGCTTTCAATCGGAATAAAATCTCgaaattttcttatattttca
agttttctaTGAGGGGAGGgcaaacttttaatttttatgattAAACCTGG
GACAGCGGCACAAgaccaataacttttgattataTACACTACTGCATTGT
AGCAAAAATTTGGTATAGGTTAACATTATTACAGTCTAGCGTTCAAAATC
TAATGTTTTCACACCACATTTCAAACTTGGAATGGATTTGGTGAGCCTCC
TATTCCATTTCAACGCCCTAACAGATCCAATCCCTCCCTCCTTGCCGGGG
CAAATAAGCAATGTCATTGAAGTTTATATTTCGatactaatagacctttt
cataaattacgccaCGAACAACACTTGcttcgtattcaaacaattaacat
gtcccttgagacattaaatgattttttatgaatagaaagtaggtttaata
aaatccgctgggagtaaatcaccatggcaataatctCAAAACGAGGTAAT
GGATGTTcgtaaccattgagtttaaagcccaaagggctaatTTAGAATCT
CTAACATTTCCCAGGCGACAAAAAGTGAAGCCCTTCGGGTTTGGAGGAca
atgttcgtaacgtaatttatgaacaGGTCTATTCATACGATTGCCAGACA
ATCTTGTTTCCAGGGTGAACCTCTTATTTGAATTAATAATGAGATTAGCC
CTGGAAGCCATTATATTTTTATCGCTAGTATGAGGcgattttcagaaaag
attaaGAAATTTTGGGAAAGCAAGTCTATTTACAGTTGACCCTTGGAATT
GAACTCGTAACTGAGAATTAGTTTGAACtatagagagattcgaataatat
aTGGTCAAAATATCGAGAGTTCAccgtattttgattttttttgaaaaagg
gaaaaaagagAGGGACAAACCCGAGGTTTGCTTTTGTAACATAACATTCC
AAGATTACGCAATCTTTTAACGGCTCTGACCATGGTCAGAAAGTTGGTTA
GTCGATTTGTAAATGAAGCTTTTGTTTAGGGTAtcttttaatgggtaatt
aatctttttgtttcaaagtttctTTAAAAGTTTACATTAAAAATAGGGAT
GAAGAATTGTTGAAGAATTGGgcaaaaaccactattttcaagattttgag
acaaggaagcttttacaaaaattttccgaaaatctatttttagttcGGGT
AAATAATTCTAccgcaaaaagtttttcaaaatgttttttcttcgtcgaaa
ataaggttttcaaagttgaaatatactcttcttcgcaaaagttcTCATTT
TCTAcgtggtaattttttttcatcttgacatttaaattttcgaatttaGG
AATAATCACCCCACCAAAATATTGTATAACGTGTCATAGTTTTGTGGACT
ACTTTAaacagaaatttatattttgtacgtgtcaaatataaaaaaatcac
tatggtcagagcccttaaagttattttaaaaacatttgtgGGCTCAACTT
GTTTGATAAGGTAGTACTTAATTTTTAGGTATATTACGATTTGAGAAGCG
CAAACGATGTACGCCTTGAAGCTGAAGACAGCGCTGAGAAATGCANTATT
ACGATTTGAGAAGCGCATACGATGTACGCCTTGAAGCTGAAGACAGCGCT
GAGAAATGCAGTATCAATCACTTCAAAGAGATGGTCAAGCGGCGCCATAC
CCTTTGATCCTACCATCGTCCTTGGTAATGTTGTGCATCCTAAGAAATTT
GCACCATTAAAAAACATTGCAGTCTATCAGCAAGAGATTGACGGAGAAGA
AGATGCTATGCAGGATAACTTACGCGCAATAAGAAGCCTTCAGATGCTTG
CTATAGAGCTTGGCTATAGTAAAGAAGATAAAGCTAAAGACGCGAAGTTA
AGCCAGTCAATGAAAATGCTGCACCAAAACGTGGATTCGGCTGCTACAAA
GTATGCAGAGAAATTGCAAACAAATCTTCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049958-exon-scaffold_167-1491911889:1289685..1289730 | TCONS_00049958-exon-scaffold_167-1491911889:1289685..1289730 | Clytia hemisphaerica | exon |
| TCONS_00049958-exon-scaffold_167-1510915933:1289685..1289730 | TCONS_00049958-exon-scaffold_167-1510915933:1289685..1289730 | Clytia hemisphaerica | exon |
| TCONS_00049958-exon-scaffold_167-1575043694:1289685..1289730 | TCONS_00049958-exon-scaffold_167-1575043694:1289685..1289730 | Clytia hemisphaerica | exon |
| TCONS_00049958-exon-scaffold_167-1491911889:1291363..1291816 | TCONS_00049958-exon-scaffold_167-1491911889:1291363..1291816 | Clytia hemisphaerica | exon |
| TCONS_00049958-exon-scaffold_167-1510915933:1291363..1291816 | TCONS_00049958-exon-scaffold_167-1510915933:1291363..1291816 | Clytia hemisphaerica | exon |
| TCONS_00049958-exon-scaffold_167-1575043694:1291363..1291816 | TCONS_00049958-exon-scaffold_167-1575043694:1291363..1291816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1289685..1291816 + |
Blast
The following BLAST results are available for this feature:
|
