TCONS_00049987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049987
Unique NameTCONS_00049987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049987 ID=TCONS_00049987|Name=TCONS_00049987|organism=Clytia hemisphaerica|type=transcript|length=469bp
aaaagaatcaatatctaaaatttaatcaaaaatacaaaagattgACTATC
ATGATAattgaaaatgccaaaaaagaaaattgatgttCCTGAGAAGAGGG
CAATATCACTGCGGTATAGAGACACATTTTTGCTGGCAAACAAAGCAATT
TCTGAGGAAATTAGACAGAGACCAAGTACAAGCACTTCCAGAGATTCTTC
TACTTCAAGatataacattgaaaataaaaaatcaaacaaatcagAGAATG
AGAGCCAAACAAGTGTTGTTTGTTCAATAACATGAAATAATAGCTGGCGA
GGAATGAAAACTGTTTTATTTAATACATCATGATTAAAAGTGCAAGAAAA
GACTTCTGAATTATTCCCTTTTGCATTaaaattcaacattttcattagat
ttaTGGAGTGTaatatatattttatgaaaAGTGATATAATATAAATTTAT
CGTATCAGTTTTATAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_167:1681240..1681708+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049987 ID=TCONS_00049987|Name=TCONS_00049987|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_167:1681240..1681708+ (Clytia hemisphaerica)
aaaagaatcaatatctaaaatttaatcaaaaatacaaaagattgACTATC
ATGATAattgaaaatgccaaaaaagaaaattgatgttCCTGAGAAGAGGG
CAATATCACTGCGGTATAGAGACACATTTTTGCTGGCAAACAAAGCAATT
TCTGAGGAAATTAGACAGAGACCAAGTACAAGCACTTCCAGAGATTCTTC
TACTTCAAGatataacattgaaaataaaaaatcaaacaaatcagAGAATG
AGAGCCAAACAAGTGTTGTTTGTTCAATAACATGAAATAATAGCTGGCGA
GGAATGAAAACTGTTTTATTTAATACATCATGATTAAAAGTGCAAGAAAA
GACTTCTGAATTATTCCCTTTTGCATTaaaattcaacattttcattagat
ttaTGGAGTGTaatatatattttatgaaaAGTGATATAATATAAATTTAT
CGTATCAGTTTTATAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031671XLOC_031671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049987-exon-scaffold_167-1491911889:1681240..1681708TCONS_00049987-exon-scaffold_167-1491911889:1681240..1681708Clytia hemisphaericaexon
TCONS_00049987-exon-scaffold_167-1510915933:1681240..1681708TCONS_00049987-exon-scaffold_167-1510915933:1681240..1681708Clytia hemisphaericaexon
TCONS_00049987-exon-scaffold_167-1575043694:1681240..1681708TCONS_00049987-exon-scaffold_167-1575043694:1681240..1681708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1681240..1681708 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.2581	34.9045	35.2181	31.8704	19.5055	18.1723	14.7363	15.931	18.8125	15.3563	17.2806	11.5414	8.4398	6.97415	6.1986	4.98903	11.1654	10.9192	8.18538	10.0179	11.8737	11.3901	21.7471	22.6161	10.6947	10.9831	7.81737	6.1725	10.7495	10.8014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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