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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049993 ID=TCONS_00049993|Name=TCONS_00049993|organism=Clytia hemisphaerica|type=transcript|length=2578bp
cttcgcgaaaataagtcccgcgaaaattaaattatttcgcgaaaaaaatt
gtctcgcgaaaataagttaccgcgaaaattagtacccTTAAGGTAAATGA
TTTCANGTAACATCAGAAGATTTAGCTGATAAAATGGCTATTCAACATGC
AACATTTGAATTTGGAGGACGTAAAATTGAATTAAAGAAATCAGTTCCAA
CTAACGAAGgAGGAGGACACAGAGGAAGAAGAGGTCGAGGTGGCAATAAC
CAAATGCAAGGAGGAATGGGACCATACGGTGGAGGTGGTTACGATCCATA
CTGGGGTTACGGTGGCAACTATGGAGGCTACGGTGGTGGTTATGGAGGAT
ATGGTGAAGCCTATGGGTGGGGTGGTTATGGTGGCGGAGCAGGTGGCAAC
CGAGGAGGGCGTGGTGGCAGAGGAAGATTTACACCATACTAAACTACCAA
GCAAATTCGAATTACAAATTCTCTTCTTTGGAACTTCGATTTGAAAccag
ttttcaaaactttggagaACTTTggagaactttttcaaaaaggatTTTGG
AAGTCGTCAATTGATAATAAAGAACTTTGGAGATgatgaatttttatttg
aaagcaaAGGATTTTAATGTGAGCTGTAGATAACTTGATGAGTAACAAAC
AAGACGATCCTTTTGTGAACTTTTTTAACActttaatataaaaattttaa
agctggAATAGCCATTTTATCTTAACCATTTTTGTGTTGTGTTTAATTCA
GGTTGGTATTGACCAGACCAAGTGGTGAAGTCATTCCCATAGCCCCTCCc
tattttttggggaaatcaaaatttactCCTCGACTTTTAACTAAAGTTAC
ACACCTGGCTATTTCTCTGATTATTCTAAGTCTCGATTAATTTTTATATT
ATTctgattttttaaactttgattAATTTAATTTCCTATGTTGAAGTAGA
TGAAATGGCAAGGGGAAAATATATAATGCTCTGtcgtttttgctattttt
ttacAGGTGTGTAACTTTAGACTTATCTTGAACTTAGTTAAAAGTACTCT
CAGGTGCCTTCACTTCAAATAAATgtctgaaaaatacaaaacaagcTCCT
Gtccaaataaattaaaaattgtgagaattttgactaattttattcagttt
ttcGGACATattgttcaattttgtttgtcatGGCAGATTTATATACATTA
TGGGAAAAACATTTGATGGATTTTTAAGTTGCTCTATTTATTCTCCCAAA
tatgtgctatttcaggctttaaaacatGTCATGGGTTTTTCCTTTAGAGT
GATTTCTTTAATTATTCAAATAACCTTAGGAGGCACGTGAGAGTACAAAT
CCTTTGTTTCGATTTGTCCAATTCCTTTGAGAGTGTAACATGAAAAATGT
CATGTATGGTTCTCAGCAGTTTCCTTTATTCTATTTCTAGACTGCGCTTT
GAATCATTGTTTGAAGCATATAGCTTATAGCCTTATCAAGGACATTAAAG
CATTAATTCGATTTAGAGATTATTCTTGCAAATAAGGCGAgaacaattta
atttgttgttttatggGCCCGAcaaaccctatttttgctaaaatcaaaaa
aaaaatattgaatctcCACTACAAtgtattttacacactagttatttgta
agaatcaaatttgaataaagctgaaaattaattcaagaaattgaaaaatt
tagaaaatcaggTATTCCATACACaaagattttattatgatcttcatcga
agataaaaaattgaatttttaatccatatattttttggaaaatattttcg
gtactttaccaaccctgataaatgaaaaatttattcttattttaccgacc
gactgacccatattttgctaacgatctgcctgtagaacaacaaattaaat
tggtctagCCTAATGCGTTTTTGAAAACTAATTCttgtttgattttgtat
tttgaaaCTGCTGAGAGCTTATTTTTCTCCAATGTTTTGTCCCCCTGTCA
TTGCCCTTTCTCCTCAAAAGAAGTATGTGGTAAAGCCTCCAAGTAAGTTG
AGGGGAAGGAGGTCTGATATTGTCGAACGTTGAAAGAGGTTGGGTCCATA
AATTCTATGAGAAATTACAAGCGATTTACATTCTAATCTTTATAATTTTT
AACGACTCGAGGCGATTTAACTGTGCTGATTTCTGATATGTTTCACATAA
TTACGTTTTCCCCGTTAAATATTCGAAAACGTCCACCGGCCATCCGCTGA
TTAAACTTTATAACGACTTTTGAATTGCAGAAGCGCTTGAGGCATTTTGT
ATCGAAACTGAgggtttaaaaaatttattacatctgatacacgctttttt
ttataataatagtgtactttggatgagggtcaagtacacgtttgtttttt
taagaaacaggctcagaatgcctaaaaactgagaaacatctaagaaacat
gctgaggctgagaatgaaaaaaaattttaattcgtttttttttttagaac
cttccaattaaaacgaaaattcttttcattgcgtgaaaataggctgatta
tgtcaaagactttttaaaaacattgagG Run BLAST on NCBI protein sequence of TCONS_00049993-protein >TCONS_00049993-protein ID=TCONS_00049993-protein|Name=TCONS_00049993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MAIQHATFEFGGRKIELKKSVPTNEGGGHRGRRGRGGNNQMQGGMGPYGG
GGYDPYWGYGGNYGGYGGGYGGYGEAYGWGGYGGGAGGNRGGRGGRGRFT
PY Run BLAST on NCBI transcript from alignment at scaffold_167:1746359..1749261+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049993 ID=TCONS_00049993|Name=TCONS_00049993|organism=Clytia hemisphaerica|type=transcript|length=2903bp|location=Sequence derived from alignment at scaffold_167:1746359..1749261+ (Clytia hemisphaerica)
cttcgcgaaaataagtcccgcgaaaattaaattatttcgcgaaaaaaatt
gtctcgcgaaaataagttaccgcgaaaattagtacccTTAAGGTAAATGA
TTTCANGTAACATCAGAAGATTTAGCTGATAAAATGGCTATTCAACATGC
AACATTTGAATTTGGAGGACGTAAAATTGAATTAAAGAAATCAGTTCCAA
CTAACGAAGGTAATTCACAATTATTAAACAGAATTACACAGGATGCTTGA
ACTTTGAAAGCCATGTGTGTACATTGAAGTACCTTAAGGGTATTAATTTT
CGCGNATTTCGCGAAAAAAATtgtctcgcgaaaataagttaccgcgaaaa
ttagtacccTTAAGGTAAATGATTTCACTATTATCAATTGTAATGCCAAC
agaatttggagattttaaggcttgattatcatttaaaaatttatttaagg
AGGAGGACACAGAGGAAGAAGAGGTCGAGGTGGCAATAACCAAATGCAAG
GAGGAATGGGACCATACGGTGGAGGTGGTTACGATCCATACTGGGGTTAC
GGTGGCAACTATGGAGGCTACGGTGGTGGTTATGGAGGATATGGTGAAGC
CTATGGGTGGGGTGGTTATGGTGGCGGAGCAGGTGGCAACCGAGGAGGGC
GTGGTGGCAGAGGAAGATTTACACCATACTAAACTACCAAGGTAAGAAAG
TTTTCAGCAGAACAACATCCCCTTTGGCCCATTTGATCATTCACCATTTT
CACTTTTTGCCTTTCTTGTTTTTTAGCAAATTCGAATTACAAATTCTCTT
CTTTGGAACTTCGATTTGAAAccagttttcaaaactttggagaACTTTgg
agaactttttcaaaaaggatTTTGGAAGTCGTCAATTGATAATAAAGAAC
TTTGGAGATgatgaatttttatttgaaagcaaAGGATTTTAATGTGAGCT
GTAGATAACTTGATGAGTAACAAACAAGACGATCCTTTTGTGAACTTTTT
TAACActttaatataaaaattttaaagctggAATAGCCATTTTATCTTAA
CCATTTTTGTGTTGTGTTTAATTCAGGTTGGTATTGACCAGACCAAGTGG
TGAAGTCATTCCCATAGCCCCTCCctattttttggggaaatcaaaattta
ctCCTCGACTTTTAACTAAAGTTACACACCTGGCTATTTCTCTGATTATT
CTAAGTCTCGATTAATTTTTATATTATTctgattttttaaactttgattA
ATTTAATTTCCTATGTTGAAGTAGATGAAATGGCAAGGGGAAAATATATA
ATGCTCTGtcgtttttgctatttttttacAGGTGTGTAACTTTAGACTTA
TCTTGAACTTAGTTAAAAGTACTCTCAGGTGCCTTCACTTCAAATAAATg
tctgaaaaatacaaaacaagcTCCTGtccaaataaattaaaaattgtgag
aattttgactaattttattcagtttttcGGACATattgttcaattttgtt
tgtcatGGCAGATTTATATACATTATGGGAAAAACATTTGATGGATTTTT
AAGTTGCTCTATTTATTCTCCCAAAtatgtgctatttcaggctttaaaac
atGTCATGGGTTTTTCCTTTAGAGTGATTTCTTTAATTATTCAAATAACC
TTAGGAGGCACGTGAGAGTACAAATCCTTTGTTTCGATTTGTCCAATTCC
TTTGAGAGTGTAACATGAAAAATGTCATGTATGGTTCTCAGCAGTTTCCT
TTATTCTATTTCTAGACTGCGCTTTGAATCATTGTTTGAAGCATATAGCT
TATAGCCTTATCAAGGACATTAAAGCATTAATTCGATTTAGAGATTATTC
TTGCAAATAAGGCGAgaacaatttaatttgttgttttatggGCCCGAcaa
accctatttttgctaaaatcaaaaaaaaaatattgaatctcCACTACAAt
gtattttacacactagttatttgtaagaatcaaatttgaataaagctgaa
aattaattcaagaaattgaaaaatttagaaaatcaggTATTCCATACACa
aagattttattatgatcttcatcgaagataaaaaattgaatttttaatcc
atatattttttggaaaatattttcggtactttaccaaccctgataaatga
aaaatttattcttattttaccgaccgactgacccatattttgctaacgat
ctgcctgtagaacaacaaattaaattggtctagCCTAATGCGTTTTTGAA
AACTAATTCttgtttgattttgtattttgaaaCTGCTGAGAGCTTATTTT
TCTCCAATGTTTTGTCCCCCTGTCATTGCCCTTTCTCCTCAAAAGAAGTA
TGTGGTAAAGCCTCCAAGTAAGTTGAGGGGAAGGAGGTCTGATATTGTCG
AACGTTGAAAGAGGTTGGGTCCATAAATTCTATGAGAAATTACAAGCGAT
TTACATTCTAATCTTTATAATTTTTAACGACTCGAGGCGATTTAACTGTG
CTGATTTCTGATATGTTTCACATAATTACGTTTTCCCCGTTAAATATTCG
AAAACGTCCACCGGCCATCCGCTGATTAAACTTTATAACGACTTTTGAAT
TGCAGAAGCGCTTGAGGCATTTTGTATCGAAACTGAgggtttaaaaaatt
tattacatctgatacacgcttttttttataataatagtgtactttggatg
agggtcaagtacacgtttgtttttttaagaaacaggctcagaatgcctaa
aaactgagaaacatctaagaaacatgctgaggctgagaatgaaaaaaaat
tttaattcgtttttttttttagaaccttccaattaaaacgaaaattcttt
tcattgcgtgaaaataggctgattatgtcaaagactttttaaaaacattg
agG Coding sequence (CDS) from alignment at scaffold_167:1746359..1749261+ >TCONS_00049993 ID=TCONS_00049993|Name=TCONS_00049993|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_167:1746359..1749261+ (Clytia hemisphaerica)
ATGGCTATTCAACATGCAACATTTGAATTTGGAGGACGTAAAATTGAATT
AAAGAAATCAGTTCCAACTAACGAAGgAGGAGGACACAGAGGAAGAAGAG
GTCGAGGTGGCAATAACCAAATGCAAGGAGGAATGGGACCATACGGTGGA
GGTGGTTACGATCCATACTGGGGTTACGGTGGCAACTATGGAGGCTACGG
TGGTGGTTATGGAGGATATGGTGAAGCCTATGGGTGGGGTGGTTATGGTG
GCGGAGCAGGTGGCAACCGAGGAGGGCGTGGTGGCAGAGGAAGATTTACA
CCATACTAAATGGCTATTCAACATGCAACATTTGAATTTGGAGGACGTAA
AATTGAATTAAAGAAATCAGTTCCAACTAACGAAGgAGGAGGACACAGAG
GAAGAAGAGGTCGAGGTGGCAATAACCAAATGCAAGGAGGAATGGGACCA
TACGGTGGAGGTGGTTACGATCCATACTGGGGTTACGGTGGCAACTATGG
AGGCTACGGTGGTGGTTATGGAGGATATGGTGAAGCCTATGGGTGGGGTG
GTTATGGTGGCGGAGCAGGTGGCAACCGAGGAGGGCGTGGTGGCAGAGGA
AGATTTACACCATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049993-exon-scaffold_167-1491911889:1746359..1746567 | TCONS_00049993-exon-scaffold_167-1491911889:1746359..1746567 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1510915933:1746359..1746567 | TCONS_00049993-exon-scaffold_167-1510915933:1746359..1746567 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1575043694:1746359..1746567 | TCONS_00049993-exon-scaffold_167-1575043694:1746359..1746567 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1491911889:1746808..1747049 | TCONS_00049993-exon-scaffold_167-1491911889:1746808..1747049 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1510915933:1746808..1747049 | TCONS_00049993-exon-scaffold_167-1510915933:1746808..1747049 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1575043694:1746808..1747049 | TCONS_00049993-exon-scaffold_167-1575043694:1746808..1747049 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1491911889:1747135..1749261 | TCONS_00049993-exon-scaffold_167-1491911889:1747135..1749261 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1510915933:1747135..1749261 | TCONS_00049993-exon-scaffold_167-1510915933:1747135..1749261 | Clytia hemisphaerica | exon |
| TCONS_00049993-exon-scaffold_167-1575043694:1747135..1749261 | TCONS_00049993-exon-scaffold_167-1575043694:1747135..1749261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1746359..1749261 + |
Blast
The following BLAST results are available for this feature:
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