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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049995 ID=TCONS_00049995|Name=TCONS_00049995|organism=Clytia hemisphaerica|type=transcript|length=1115bp
CCACTTCTATTTCCTTTTCTTGGTTACATTTTACAATGTAAAATACCTAC
TACACCAAAATCCAAATATGAAACTAAATATTAAACACCCAAtaaagata
agataagataagtattctaaaaacaaaatcaaaatagcaATCCAATAGTA
GATGTAATTTCAATCTACGTATATTTATATGTTCCTTTTAATCTTCATTT
CGACAAATTCGGGAAGGTTGAATCCACGCCATCGTATTTTACCACCACCT
TTAGTGAAGTTGTAATTACCAGTCAACAGCGTGCTGTAGCAATCTTTGAA
CCACCACCCAACTCTTCCGTAATTAGTCGAACAACTAGTTCCATAGTTGT
CATTATCCTGATCATACGTTGAAAACTTCATGTTGTTGTGGAGACCAAGA
AAAGAGCGGTATCCGGTTAAATGGGATGCGTTTCCTGACACACCGCTGAT
CTTCAATGTGTATTTGCTCACCTCATCTCCAATTTCAAAAGTGTCGTATT
TGGCGAAAACTAATTTAGTTTGTCCTTTCATTCGCATATTGATGAGCAGT
GTGGAGCTTTTGGGCGCAAAGGTGGGTTTGGTGAAATCGTGCATATTTTA
TTTCCGAACCAAAATTCGgttaaaagttttccaaatccgAGCTTGTAATC
TTTCCAGGGTCTTTGGAAATTGACAGAACCATCTTGGCGACGCAAAATGG
TTGTGAAACCACCTCCTTCACTCGTCTGATCGCAAAAGACATTGATCTCA
CTGAATCGAGGACCATGGATTTTGTACAAACCATTTTTTCGAAAGCCAGC
TTGTAGAAATTCCAAGCAATCTTGCATCGGCTCGACGTCTGTGCAATCAC
AACTGTCACTATCCTTGATTGGTTTGCAAGGAGCGCAGTGTCCATGAAGC
TTTCTTAGGTATCCAACTTCAGAGTTCAAAAGTTGAACTTCTTTTTGGAG
GTTTTGTGTAGATTGTTTCAACACATGAACGTTTTGTTGAAGGTTTGTGA
TGGTTTTATCCAATAATCGTCCAGCAGTTTGATTGGTTGAGGTTGAAGAA
GCTTGAAAGATACAAGCAAATAATTGAACGCAGATGATCGCCAACATTTT
TGATGTCTCCATAAG Run BLAST on NCBI transcript from alignment at scaffold_167:1780152..1793141+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049995 ID=TCONS_00049995|Name=TCONS_00049995|organism=Clytia hemisphaerica|type=transcript|length=12990bp|location=Sequence derived from alignment at scaffold_167:1780152..1793141+ (Clytia hemisphaerica)
CCACTTCTATTTCCTTTTCTTGGTTACATTTTACAATGTAAAATACCTAC
TACACCAAAATCCAAATATGAAACTAAATATTAAACACCCAAtaaagata
agataagataagtattctaaaaacaaaatcaaaatagcaATCCAATAGTA
GATGTAATTTCAATCTACGTATATTTATATGTTCCTTTTAATCTTCATTT
CGACAAATTCGGGAAGGTTGAATCCACGCCATCGTATTTTACCACCACCT
TTAGTGAAGTTGTAATTACCAGTCAACAGCGTGCTGTAGCAATCTTTGAA
CCACCACCCAACTCTTCCGTAATTAGTCGAACAACTAGTTCCATAGTTGT
CATTATCCTGATCATACGTTGAAAACTTCATGTTGTTGTGGAGACCAAGA
AAAGAGCGGTATCCGGTTAAATGGGATGCGTTTCCTGACACACCGCTGAT
CTTCAATGTGTATTTGCTCACCTCATCTCCAATTTCAAAAGTGTCGTATT
TGGCGAAAACTAATTTAGTTTGTCCTTTCATTCGCATATTGATGAGCAGT
GTGGAGCTTTTGGGCGCAAAGGTGGGTTTGGTGAAATCGTGCATATTTTA
TTTCCGAACCAAAATTCGgttaaaagttttccaaatccgAGCTTGTAATC
TTTCCAGGGTCTTTGGAAATTGACAGAACCATCTTGGCGACGCAAAATGG
TTGTGAAACCACCTCCTTCACTCGTCTGATCGCAAAAGACATTGATCTCA
CTGAATCGAGGACCATGGATTTTGTACAAACCATTTTTTCGAAAGCCAGC
TTGTAGAAATTCCAAGCAATCTTGCATCGGCTCGACGTCTGTGCAATCAC
AACTGTCACTATCCTTGATTGGTTTGCAAGGAGCGCAGTGTCCATGAAGC
TTTCTTAGGTAACCAACTTCAGAGTTTAAATGTTGAAGTTCTTTTTGAAG
TTGTTGAGTAGATTGTTTCAACACATGAACGTTTTGTTGAAGGTTTGTGA
AGGTCTGAGATTTCCCCAATAATTGGCCCAATAATCGTCCAGCAGTTTGA
TTGGTTGAGATTGAAGAAGCTTGAGAGATACAAACGAATAATTGAACGCA
AATGATCGCCAACATTTNGGTTGAGGTTGAAGAAGCTTGAAAGATACAAG
CGAATAACTGAATGCAAATGATCGCCAACATTTTTGAATCTTCCAAGTTG
AAAGTATAGTAAGCTTCTCGTTTGAGATGAAATTTCCGTAAAAAGTTTCA
CCTTTTATAAATTTCTCTACATATTCTGGGTGATCGAGTGGAGGTAATTT
GTTTTGTCTCGATTTTGaggaagatttttttttctccaagaaAACATTAT
GTAAGATTTCAcaattctagagaaaaagttttgaaatctcTTTAGCCTGA
AAAATGACCAAGCATTAACGAACAATGCTTAGAAACctctaatacacctt
tcccgagatGTTGccattttttaaaggttttcaaattttttttagagatg
aatcaatcctgaaaatttgagctcaaaagcTCTTTTCTATCACTGTATAT
GGCTATGCTTATTCATGGTGCAAAATGTCTCATAAAAATCGAAACTTATA
GCCCGGCCTCGTTTTCAtttaattctattgtttaaaataaaagttcaatt
caaaatacagttgacgctctctaattcgattttcaaggggaatcggattt
tcatcgaaaacgggagcgtatcgaatagtagaaagtCTCCCTAATCCGAT
AACCACGAGGTAAATATCGAATTATAGAGCtgagaaagaaaaacataagC
GAGACTCGATTGGTTTGAACGCGAATCAGGATAAATGTCTAAGTTCTTGC
TGAAAACCTAAGTTCTTCGGAAGAAAACTTTCGATATTTgcctgttttga
aaagttttgaggaATCGAATTTCCAAATTATAATTCAAacgcaaaaaaat
cgaaaatttgaatttcgagCTCCGTCCTAAAGGCCTTTTTACACGCtaga
aatcgaataagagagcgaaaAACCTTAAagggacttcaaattttcatcga
aaacgggagcttatcgaataatagaatgtcgaatagtagagcgtagttta
tgagagtttcttaaggaaatttgacggtgactttcaatttgatcgaaaac
gggagcttatcgaatagtagaacgtcgaattagagagcgtccacTGTAAC
TCAAAAACCGGAAGAGCTTTTTGGATaatcctttttttatttgttttgta
tttttttacagatttttattttaccaaaatgaaacacTCAAACATTGTAA
CAAAAAAAGTCACAAACatctcgggaaaggtgtattattaTTGCAGATGG
GGAACACGCCATGACCGATACACTGATAAAAAGACCTTCTATATGCTGGA
TGATTTGTATGCTTACGTTTTCAATTTCGCGCATATCGAGCTTTGTCGCA
ACTATGCAATTATTGGGGCAAAGCCATATTTAACAAATAATAATTTTTCG
CAAATAAAAAATTCTCCGTTAAAAACACGTGTctttatcaaatatttttc
tgtcgACGGAAGTATTTTCCGACGCGGGAATATTTTGTATTAGCTGACga
atcttaaatattttgaaattattcaaaataacGTTCTTTGACAATGCTTG
GTATAAACTTCtgagaattttgatgtttttccaGCCTTCACTTCCGAaat
gttcattgaaaacattttaaaatagcCTGAACGACCATCTTATCCCTCGT
TAATTATTATGGCTAATTTAAAATTTAGCCACTCCTccttttttcttact
tttgtccacatattttttcaatcttcatttttattttttgtcacTTGATA
AAAGTTTGAGTAACAACTAAtcaatagaaatattcgaattgcacAACCAT
GAAATGggttagtttttgaaaaaaatcgtggatttttttccgcaaggttt
ttctttttctcttttcgcgGGGTGATTACAGCAGGGCTATTACGGATTAA
TCACCCCATTTCTCCCTTATAtttctaagctaaatgtaatcagcGATATA
ATTATGTCCGGAAAAACATATCCCAAATTATGGCCAGGTATTTCTTCAAA
TGGAatgttttcgtttttgtttACTCTTATTGAAAGTTAACTCGGCAAAT
GAGTAAGGCTTTatattcttgttgttttttgaatagATAATCAAAACACT
GATAAAATGCCCAAATAGTCCAGGCAATATGGGGCATGAGGTACCACCTT
GACGGCGAAAAAggtttgaaactgtttttggGTTCAAACATTTCTATATT
TTGAGAATCACGATGGTTTTCAGGCTAACCAGGGGGCGATAAATTTTCAG
AAGGGGTGTTTCGAGAGTACGTGGCAATCGTTTTTGGAGCCGATTAGCCT
GGGGTAGGGTACTGCATTTCAAGATATCTTATGAACTACATATCAAAACC
TATTAAAACTTTGCAGGGTTTTAGATAAAGCATCAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
tgagcttcaaaaagcgcaaaaactggacaaaatagctgtttctggctgaa
aaacacggttttcaagggttaatatctcgagttaggtacataaatcacct
atacttgcaatatatctataatcttaactttttgagagctttccaaaaat
atacaacaggtctccgttttctcgagctaaaattttcattaatttttaat
cctatgatttttgcctgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACGTTGTCTGAGACTC
ATATTTTCAATCAATTGAAGCATTTTTGTTGATaatatttataactttat
atacATTCTTAGTTTAGAAGTCTGACTTAACAATTGTTAAGTGcctttgg
tattttacagaccacttTTCTGGCTacttttgatttaaataaaattgact
CAATTTGAAATGTCTTNcccttagctttccaaaaatgtataacaagtgct
tctaacaaaacagtcaagcgattccaaaaaatcgaacaaaattcccccta
ctaaaacATATGccaaaaataatgtaaaaaacAAACAGTAAAGTATATCC
GGAAAAAAGGGGAACAGATTGGTACAAAAAAATCCTCAGGATCTGTTGCT
TCAACGGATTTTTCTAATAGAAAACTGAGGAACTTGAGGATTTGTTATTC
TACTATCCTCCGGACACACTGTAGGATAGATATGACCAATAATATCATTA
TTCACCCAATCTCGTgaattttcagtaacctttgtTCGATTCAAAAGACC
TACGGCGATCCTTCGTGCTGGTCTCGTCATGTCAATATTTCTACCGTGCA
CGTGAATCATCTAAAACATCTGCTATCNGCTCGTCACATAAAGCACTTTA
TATTTTTGGCAAGCAAATTTAGGCTAAAAGTGCTCGCTATCTCTAACACT
CGTCATCTCGAAACTTCGCTTTCTGGATCTTAATCTTGATTCCTTGAGGT
GTTTTTCACTGTTACAAAaaaatagtagagggcattttgtaaaatcgctc
gactgttttgttaaaagcacttgttatacatttttggaaagctaagtgGT
AGGTNATCTTAAGTTTAAACTTACCAAGAATAATGTTgcgctacaatcat
ggttgaaatataatgagaattccgtttattttaatgtttttcaagattta
aagttcaggcgagaaagtcgattttgggctatctctttaatttaatcgaa
tatttcaattagggaggggttggcagacttccaagctatattctgagcct
tattggactatttttgaatttttgaatccTCAGgtcctcctaagtcttaa
gtctagcgttaaaactcagagttaaaactctacctttcgaacgtacttta
gagcacttacaaatcgattgtggttttaaaaacttcccggtggatttccc
ttttttctcaaatattacgaccttgATTGTATCAATGTTGGTACTCGCTA
atatttttacagggaaacaaGAGACAATCGTTCTCAATGCAAGTTGAATG
GTTTTAAAGAACCAAAATTGAATATCATTTTAGATTTGATCATTAGAAGA
TCCCTGTCTCAACGACCCATTGAATCTGTGGGAATAAGGTTAAGAAAAGT
ATCCAATGGGATTGACTAATCTcttggttttaaggggtattttaAGACTT
GGTGGCTATGGTTAGCTTAGTGGTTGTTAGCTCAGTTGGGTTGGTGTGTA
GGGGTGAGTCATAGTACAGGTTAGCGCCTTGACCGATACTACCGAATTCT
CCTCATCGCTCGCCTGGGAAGATAATGTTTTAGAAAAAAGCACATCTCAA
CGTTGTCTCAAGGAGTTCGGCGATCAGATGCATAGTAGTCATCAGTAAAT
GTGATTCAGCAATGTAGGTTTAAGGTGGTCGTATAAAAGTTGGAGGTAGC
CATTACACAGTTTAGCGTAAGCAACATCCCATCCCGTCCTGTTTAAATTG
ATTCGAATAAAAAGACCTGAGTGAGAATCAACCGCATAACCTAGCGTAGA
CTGGAGCTACTTTCTTCTTTAGATTTTTGTGCTAAAAACTGAAAACCTTT
TAAAAACCAGcacaaaaaaaaggttttttagacAAGTTCCCAGATAAATC
TCTCATATCAGATCGCCATTTCAACCCTCTAATCTAAAGTGATGTTGCGA
ATGTGATCTCTCGTACAACTTAGTGGATCAACCAGGGTCTGTTCGGAGAT
AACcgataaatgcaaaaaaaaaaatatatctgaTGTAGTATAAGGCCCTA
AGTAAAAATTTTACTGATCTTTCAGGGTTACGAATACCATCATACTCTCT
TTAAGTTGATACAGCAAAATCTTCATTAGTAGTGTCTTAAAGATATTGAC
GAAAAACTGTATTACTCTAGAACTAGGAAAAGGTTTTAAAGCCTAGAAAG
TAATGTCAAGCTTGACTTAACGTGCCGATACTGATGGCTTTGATCTGTAA
TTTAGATTAGGCACTGTACGCCACCTTGAATGTTGCAtgtacagtaaaac
ctctaattaacggacactctaaaaggcggacacccctgattagcggacaa
tttcattttccccggccgttccctagtcaaatcctcataaaaaagtttct
aaaaggcggacactcaattagcggaccctctgattagcggacNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTtta
cttactcatcaattttaattcacaagctttctcccattggattgacacgt
atgtggagcaagattggtcagaaagaggaatagAAAAACATTGTTTGTTT
ATATCATGCATAATAGAACAACAGGCAGACATTTTCCCtttatgaaatat
gtgtctgatatgaaatgggaacacttgtgtaaaaataaaacctttaacgt
tTGAGTCGTTATTAAGACTTTTCCACTACAATGTAAACACAGGTCAACTG
TGTCAGTCTTGTTTGATAGTGCAGCATAATACTTTAAATGTATTCATTTT
CAGCTACTTTTATATAGATATACCCAAAAAAGGGAAGGcttagtctgtaa
aataccaatcaGATAAATAAAATGTTTAAGGGATATATTTTTTGTCTGCT
TCCACAAGTCAACGTAGCGGGGTTTCGTGCAACGCTTTatatatctggtc
tgtaaattacatttTCCATCTAATCGTCTCATCATCTGATTTAAATTGAG
CAGNNNNNNNtgaaaattttaaaagcatttCAACTTTGATTTACATGACT
TGATGACAAGTGAGATATTTCAAATTGagtcaattttatttaaatcaaaa
gCAGCCAGAAaaatggtctgtaaaataccaaaggCACTTAACAACTGTTA
AGTCACACTTCTAAACTAAGAATGTATATATAGTTATAGATATTATCAAC
ATAAATGCTTCAATTGATTGAAAATATGAGTCTCAGACAACGTTGAGGTG
TCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACAATCTTTG
ATGCTTTATCTAAAACCCTGCAAAGTTTTAATAGGTTTTGATATGTAGTT
CATGAGATATCTTGAAATGCAGTACCCTACCCCAGGCAAATCGGGTCCAA
AAACGATTGCCACGTACCCTCGAAACACCCCCTCTGAAAAGTTATTGCCC
CTGGTTAGCCTGAAAACCATCGCGATTCTCAAAATATAGATGTGTTTGAA
TccaaaaacagtttcaaacttttttcgcCGTCAAGGTGGTACCTCATGCC
CCATATTGCCTGGACTAAAAACAACCGTagcaaaaatcattaaaaaaaac
tgacagGATAACGgtatatattttaattttgttgaTGATAAGCAGTGGAA
TAGTATCAAATTTCAAGATATTACATTCAAGTGAGTTCACGTGCTAGACG
ACTTCAAAttatcccgtaataccgtatcATAACATTATTATAACACGCAT
TATAACACCTATAGCACTTTTCCATGAAAAACCGCATACGAGGTCCATTT
TCGTTCCAAGGGGTTGAGGTTTGATATGTggtggaattccatagggagat
acaaaaatctgtcataAATAACAGGAATTCCAtggggtagctttttaaat
cctactaaaatttagaattccagaggggtataagcctgaaattgcctgga
attccagggggttacgtcatttccagccacaaagggatggacctcctcaa
cagggggtatacgtttttttctggaaaagccttaTCATAAACGACTCAAG
TTTACCAAACTTACAAACTTATTTGTTTTAgatttgaaaaagttatttga
gaaaaaaggagcTACGTTATTCAAATACATCATTAGCAGTTTTACATTAG
TTAAAGGTTTACTTTTAcacaagtgttcccgtttcatatcagacacatgt
ttcatatcaggacagtgtctgcctattgttatattgtgctgatataaaca
aaaaaatgtttttcttttcctccttcTGACCGATCTTGCCCCACGTCCGT
GTATCACTCTTATTACGATATCATTCTTATTCAAAACCTCTAAGCTGGTT
CAATCATCAGGATTATATGGATTTATAATGATTGgtcattttgttcattt
ttcataccaaagattcttaGAGTGGCCCTTTTGTGACTATCAGCTcggaa
attgaaaaatgaaaaaaagaagacgtaTTTCACCTTTTTATTGATTCTTG
AAACCACATATTAAActtacaatttaaaaaaattgaggaACACACTTAAT
TCCCTAATAAAACAAGAATTCATAAGaaaactgtcgaacgtgctaaccgc
actggctcaacttcagtatctttgaaatcattcgtaggcccaattgtaaa
cttaatggcttaagaaaaattatagcaNNNNNNNNNtatagcattttggg
ttttagcctcgttttggcgaaaaactcgtccccaggccccaaaaattaaa
attttgaaaaaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tggcgaaaaactcgtccccaggccccaaaaattaaaattttgaaaaaatg
aaaaaaacacccccagggatttgcccaaggatcaagtgtgcaaaatttca
gcccagtcggatcatttttgaagtctccagcctgccccaaagttttggtg
acagacagacagacagacacacacacacagacagacagacattctcagat
tctagctcaactgaagttgagaataggtgattaagaaaaacaatgttACA
ATATTTCTGTTCAAAATAAACGAATCTAAATATTCCAATGAAACGTAATT
TTAGATGTTACGCCTCATCTTAATCTCGGCTAACTCAGGATGAAAACCAA
ATCCCCACCAAATCACCAGatcccccagggatttgcccaaggatcaagtg
tgcaaaatttcagcccaatcggaccatttttgaagtctccagcctgcccc
aaagttttggtgacagacagacagacagacagacacacacagacagacag
acagacattctcagattctagctcaactgaagttgagaataggtgattaa
gaaaaacaatgttACAATATTTCTGTTCAAAATAAACGAATCTAAATATT
CCAATGAAACGTAATTTTAGATGTTACGCCTCATCTTAATCTCGGCTAAC
TCAGGATGAAAAACAAATCCGATTTTTTCGTAGAACTTAATTGCGATTTA
TCTTTCTTCTTGGGAAACCTCCTTGCTTCCAAACATCTGAAGCTCACATT
TTTCCAATTCTAAGCCTTTCAAAAAGAGTTCGTCGGAAATATCAGGAGAT
ATTTTTAGTCAGGGCCACAATCTCGGAGAGTTTAAAGATAATTCTGTTTT
TCATTGTTATACCcataaaagttcaagaatacAGAAGTTAGAAATATAAC
TaatcctaaaaaataaaattagtcCCCATTTGATCGTATCGAAATCTTCA
GTTTGTTCGTTTTGCGGTTATGTGTTCCTTTTTTCCGAGCTcctagaaaa
aaaagtttgtatcgCTTAGTTATTAGTTTTGTCAATGTCTATTTGATCTT
AtctcaaaatgtaaacaaagaagGGACCTATGGGTTTCAAGTATAAAAGA
CTCTTAGCATTTTCATCATTCTTAGTAACCACTGTCTAGGAAAACGTCTT
GTAAATGAATTCCAGATAAAGGGTTGAgctgaagtttttataagatactt
aaTTTGGTCATTTGACGTATATAATAGAAATGACGAATTCTTTagagaaa
ataacaaaattgtttttttacagattaacgaccaaccaaatgaaataaga
gcttgtaaaaactttaACCTGTCCCAAAATAAAAAGGTTGATTTCTTGCA
TTTTGTAAGGATCATATCATACCTTTATGTTCTTCATTAGAGATTACGGC
GCACCATCAATTCCACAAACTCGGGTTCGACTTCCTTGGGATTATACCAA
GAGATTTCGCCATTGCCGGTACCCTTGGTGAATTTGTAATTACCAGTCAA
AAGCGTGGTGTAGCAATGATTGAACCACCAGCCAACTCTTCCGTGTCCAG
TCGAACAATGGCCAGAAGAATAGTCATTATCCTGATCATACGTTGAAAAC
TTCATGTTGTTGTGGTGGTAAAGAAAAGAATCGGATTCGGTTATATGAGA
TGCGTTTCCTGACACACCGCTGATCTTCAATGTGTATTTGCTCGCCTCAT
CTCCAACTTCGAAGGTATCATATTTTGCATAAACTGGTTTTGTTTGTCCT
TTCATTCGCATATTGATGAGCAGTGTGGAGCTTTTGGGCGCAAAGGTGGG
TTTGGTGAGATCGTGCATGTTTTCATTTCCAAACCAAAATTCGgttaaaa
gttttccaaatccgAACTTGTAATCTTTCCAGGGTCTTTGAAAATTGACA
GAACCATCTTGGCGACGCAAAATTGTTGTGAAACCACCTCCTTGGCTCGT
TTGATCGCAAAAGACATTAATCACGCTGAATCGAGGGCCATGGATTTTGT
ACAAACCATTCTTTTGAAAGCCAGCTTGTAGAAATTCCAAGCAATCTTGC
ATCGGGTCGACGTCTGTACAATCACAACATTCACTATCATTGATAGGTTT
GCAAGGAGCGCAGTGCCCATGAAGCTTTCTTAGGTATCCAACTTCAGAGT
TCAAAAGTTGAACTTCTTTTTGGAGGTTTTGTGTAGATTGTTTCAACACA
TGAACGTTTTGTTGAAGGTTTGTGATGGTTTTATCCAATAATCGTCCAGC
AGTTTGATTGGTTGAGGTTGAAGAAGCTTGAAAGATACAAGCAAATAATT
GAACGCAGATGATCGCCAACATTTTTGATGTCTCCATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049995-exon-scaffold_167-1491911889:1780152..1781059 | TCONS_00049995-exon-scaffold_167-1491911889:1780152..1781059 | Clytia hemisphaerica | exon |
| TCONS_00049995-exon-scaffold_167-1510915933:1780152..1781059 | TCONS_00049995-exon-scaffold_167-1510915933:1780152..1781059 | Clytia hemisphaerica | exon |
| TCONS_00049995-exon-scaffold_167-1575043694:1780152..1781059 | TCONS_00049995-exon-scaffold_167-1575043694:1780152..1781059 | Clytia hemisphaerica | exon |
| TCONS_00049995-exon-scaffold_167-1491911889:1792935..1793141 | TCONS_00049995-exon-scaffold_167-1491911889:1792935..1793141 | Clytia hemisphaerica | exon |
| TCONS_00049995-exon-scaffold_167-1510915933:1792935..1793141 | TCONS_00049995-exon-scaffold_167-1510915933:1792935..1793141 | Clytia hemisphaerica | exon |
| TCONS_00049995-exon-scaffold_167-1575043694:1792935..1793141 | TCONS_00049995-exon-scaffold_167-1575043694:1792935..1793141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1780152..1793141 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
BLAST of TCONS_00049995 vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.260e-30 Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = -3
Query: 187 LLINMRMKGQTKLVFAKYDTFEIGDEVSKYTLKISGVSGNASHLTGYRSFLGLHNNMKFSTYDQDNDNYGTSCSTNYGRVGWWFKDCYSTLLTGNY---NFTKGGGKIRWRGFNLP-EFVEMKIK 549
L +++R G+T FA YD F +GD ++Y LK+ G SG A Y HN FST+D+D D+ T+C+ +Y + +W+++C+ L G Y N ++G W+G +F EMK++
Sbjct: 2072 LRVDLRDHGET--AFAVYDKFSVGDAKTRYKLKVEGYSGTAGDSMAY------HNGRSFSTFDKDTDSAITNCALSY-KGAFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLR 2187 HSP 2 Score: 71.2478 bits (173), Expect = 1.260e-30 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = -1
Query: 594 QDCLEFLQAGFRKNGLYKIH--GPRFSEINVFCDQTSEGGGFTTILRRQDGSVNFQRPWKDYKLGFGKLLTEFWFG----NKI 824
+DC + + G +GLY I+ G + + VFCD TS+GGG+ LRR++G NF + WK Y GFG EFW G NKI
Sbjct: 1982 KDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKI 2064
The following BLAST results are available for this feature:
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