TCONS_00049999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049999
Unique NameTCONS_00049999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049999 ID=TCONS_00049999|Name=TCONS_00049999|organism=Clytia hemisphaerica|type=transcript|length=1653bp
TTAAGATCGTCTAAGCTCAATAAACTAAGAGTCATACTTTTGAACTACCT
ACAATCACTTGGATGAAGTGGGAGAGTGGAAATCTCATGAATGCAGAAGA
ATGGCAAAACCAGGCAGCCAGAACTGAGTTAAAGTTTATAGGGAGcaTCA
AAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTG
GAGACTCACTTATTCAACGTCTAGAAGATACTGAGACGTGGGAAGATACA
ATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGA
ACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACATTGTAAACCTA
AAGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTCATCTGAT
GAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAGATGTACT
GAAAGACACTAAGATCGTTCTTATCGCTTTGCTACCACGTGGAGAAAAAG
ACAATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGAACAG
ATTATATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTGGGTT
TGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTATTTAC
ATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCGTGT
GTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAATAA
TAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgat
aaattttttttaagcatGTATAAAATCGTAATTAGGNAATAATAGTATTT
ATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaattttt
tttaagcatGTATAAAATCGTAATTAGGTTTTTAACAGTGGCTCTATCTC
TAAAGATCTAATCTTTAAGCATTACAGAGTCTGGCAAGGGAAAGACACTT
TAAAAAAACTGTATTTGGACTATGCAgcactgcaatgtcttccacggacc
caatagctgattggttgaaagtgacgtaaaatcaatcaatactTCACTtg
taaccaatcagctgttgggtccgtggaagacattgcaatggtgcatatca
tgaagaCGGACCAAGCTGCAAATGAGGTATTTTCGAGATTACTTCGACGA
AATTTAGTAAACACTTTAATTGATACTTTGATGTCCTCGATTTCAGCGTT
TGCATTTTGTTGACCTCTAACAATCAAATCGATTTGGTATTTGATTTTGC
AATTTGTTCTGTTTGTTGGGAGCAGATGTATTTAATTCTGGTAGTCAAAT
TGTTTTGGCATTTTTATATTAATCAAAACGaattttcttgaatttattag
ataaattttcattttactaaataactaaaaatgacaatataattttttgt
aACTCTTCGttaatcattttttatttttacatgcaGTACATTAGAATATT
TCTTTAAAGTCTATTTATATCATCGATAATTCATCCATGAATTTTTAgta
tatctttttaattttacgtTATAAATTTCCTTCTAGAAGATGAACATTCA
ATAAATAGTTTGATAACATATATTTCCATTGCTCCAAttatttaatgttt
tct
Run BLAST on NCBI

transcript from alignment at scaffold_167:1817022..1838945+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049999 ID=TCONS_00049999|Name=TCONS_00049999|organism=Clytia hemisphaerica|type=transcript|length=21924bp|location=Sequence derived from alignment at scaffold_167:1817022..1838945+ (Clytia hemisphaerica)
TTAAGATCGTCTAAGCTCAATAAACTAAGAGTCATACTTTTGAACTACCT
ACAATCACTTGGATGAAGTGGGAGAGTGGAAATCTCATGAATGCAGAAGA
ATGGCAAAACCAGGCAGCCAGAACTGAGTTAAAGTTTATAGGGAGGTAGG
AAGGGCCACATATATGATATTCCTTTACACATTTACGCATTTCGATTTCA
GTGAATAGTATCGTGAAggtcagttagtggaagtagTTCAATTTtagatt
gatttttgaaaacatgagcAGTTGGGtggtttaagataaaaacggcaatt
attgctcttttcggcaattattgtaggctgcacacatcccctctgataag
ttttgatataggggatgcgaattaggctcacaaaaccgttccgaacttag
caaaaaatctgctaaccaaaaaaagagttgaatgatagagaactttgatt
gacaatttgtcgtcttttgttatcttgagagttttgtttgctaattcaat
taatttcgataaacaaaaagaaagagaggagaaacagcctagactaatgt
taatttttctttcagaaaaaagaccataatttgtttacctttattcctGC
AGCTCCCCAACATCCAAGCTCTCAAACATCACAAgccgaatgaaattact
ttcgatttcccgtagaaattatgcgatgaaaaatccgggggtcgaagaat
gaagactttttatttCCGAACAAGTTATCTTTGCTTATATCGAAATATTA
CTGTTCAATATATTTGCTAAATATaatgtttgattacaaaaatgctttac
actgtatttaaagtttgaaaagtcgattctactattctacttagctcttt
gttttcatgtctaacccccgtctcaaaagaagtcccagaatcccgagatG
TTTGCAGTCTggcgttcaaaacaaaatttctttataataggcatttaaaa
tatcaaatttaaaaataatagtataaaaccttattttctactgtatagta
tttcttctaaaacgaaaaaacaaaatacactagaaaaataaagaattcac
gagtgttcccagccggcaaaaaaacgtttaaaaaacgtttaaaaaacgtt
tttcacaacgtttggaaaacgttttttcaggttgtatttgtcgcacttta
caacgttttttcacaacgtcaaaaaaacgtttttcaaacgtttatagatt
acgtttttgcaagtcgtttaaaaaacgttgtttcTACGTTTTCTTCTTGC
CACTTGAAAGACGTCTTTTTGGAACGAATTATGGACGTCTCTAGGACGTT
TCTGAGATGtcttaattttattaatttcggtATGGTACGTTTCTGAGACG
ACTTAAAAACGTCTTTAAAAGTTATTTAGATTAGTTTTAACACATCTCTA
AGACGTTCTTTGCCAAAATAACTCCTATTCATTGCACTATTATGAGAAGG
ACCGTACacacatttgaattttctttgaatgctcTTTTCTATATAATTTT
CTTGGTATAAAATTATACAATCAGTATCACATTTTACCAAACGAGATACG
CGCTGCGCGCGCAAAAAATAAAcgtaatgaaataaaaaatctgatcTTCT
TTCTCTTCCGTCCTTCCTTTCTGGCATCTTTGTGATAATCATTCCAAAAA
CATTTCCAGTATGATTGCTATTCGAAGTGTTAAAAAACGATATCTTGATT
GCGATTTCTTTGGTCTCCTTCACACATTTGCaaacctgaaaaaataaaag
acaaatagtaaatttgatgttttagCTGCGGTTGAGACGTTGAAAACTCC
ATTTCTTTCCACGGGAAAAAGAATGCTCCAGaaggataaagaaaaaactt
cttaaatttTATGGCCAAACTTTATGTTTCACGAAATGTATTCTACGATT
CTACCAAGGACTGTGCTAAATTATTGTCGTTGAGGCAGGGGTGTTTCCAA
GTCAAATTTCAGTAGTTTGAAGTACCAAGCTCAGTCAGTGATGCAGGGGT
ATTAACAACAAATCAGCATagttttggaaagatagtaTTAAAGTCTTGTT
ACATTTCATTCACCTACCTTTAATAGCATATATTCAGTTCTTTCTGCTGG
CGACCACACAAAGTCAGCTGAGGATAGTCGCATTAAGGAAACCAATAATA
CACTCCAGCTTGAATCTGAGGGAaaagaagttaaaataaaaagttttaac
ataaagtttactgaagattatgtaatttttccaaggtttgNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNGTTTTAACACGTCTCTAAGACGTTCTT
TGCCAAAATAACTCCTATTCATTGCACTATTATGAGAAGGACCGTACaca
catttgaattttctttgaatgctcTTTTCTATATAATTTTCTTGGTATAA
AAATCTACAATCAGTATCACATTTTACCAAACGAGATACGCGCTGCGCGC
gcaaaaaataaactttaacataaagtttactgaagattatgtaatttttc
caaggtttgctctcaaaaataaatatcatcAGAAATTAAAACCTGAAATA
AGCTACACTGATAAAGCCTCTAAGAATTAACTTAAatatcaaaagcattt
tcagtTTAATGTAAACTAAACTACTCACATTATCTAGTTGATTTTTGTAA
GAGAACCAGCTTCTTCCAGTCTTCGTGCATGAAACATCCAACTTTTACAG
AACCTttactttgtttgatttttgttttgaactNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtactaaaattatttt
tgagcttttttgcagtaccaccacgtcactaaatgtcatgatgtctgaga
ttttagtaccgacccccccccctgatatcaaaactaatttggggatgcat
gcagcctacaattattgccgaaaacagcaattttttcaatgacgaaatgc
tgattcagcaaaatgcgttgtccttttaagggcaaagatgtcagaggtgt
ttgaaaatagtaaaattgcatcaagaaaaaggtttttcggatttttaaaa
gtgattttttcaatttttcgttgcacagtaacatgaaaagttctaaaata
atatgctaaaagatcctgcatcgatgccgaaacacagccagaaagagata
acaaaacccccgttggaaatttgtttacatatgactcgattttgctatct
gcatttccaacaaaaaccagttttcggcaataattgtcgaaaagagcaat
aattgcagtttatatcttaaacacccgactgatgAGCCAAGATTTattct
tgttatttttttgatgatatcataccgtgagatcgggtaacttgcatcag
tggaggcaaacatgcatagccctcaaatgaatgacctgtctgcttgggta
aattaatgcgtgtccaaatttttttcaatttctcggaGGCAATtccaccc
ctcctagcataataaattatacctttaaagaagcgcattacgatgtagaa
catgaaaatcggtgttatttaaatttaggttttgccaattttgcaaaaaa
tcacaaaaaccaaaaaatgctgacgtcagcaaaatttgttttttaaaata
aCTCCAGCttggctaatggtataaacatgaaatttggaccaaagttgtaT
ATAAAGATTGAGGCTTCtcctgaaaatataggccctggaatggtaggaaa
ggccagatgtcagtctcgcatttttttacatattatttTACATTTATATT
ATTANccctgaagactcttaaaaaaatgccTCTTAATATCATCGCAGGCa
gtgaaaattatgaatttcttttgcATATAGAGGAATATCCTCTAATGTTT
TGATCAGTCTATGATCACAACTGTCCAGAAATGGACTGTCAATCATTAAA
ACCAGTTTTTGAGCCTTCCAGTACATGGAGTAGCCTGTTAAAGCCTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NCAAAAATGAATTCTCCACGacagatttttgatatttggtagTTAAAGGA
TTGATCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATGTTTATGGTC
TTGTgtatctgtgcaaaatttcatgtcatttGGACTTACCAATAAGGAGT
TATAGCAATTtggaattctggtctgtaaattaccagTCCgtattttagac
aaaatttttgaaacttcaaaatgcaatATCTCGNtcagtcatttgatggc
tatgcatgtttACAGTGGagactgatgcaagttactcgaCTTGACGGTAG
TATGGAAAACTCTTTCTTTTGTCCATAATTAGgtacaaattataaatttt
aacAAGATAGACCTACAATGCATGGTGCATGCTGTTTTAATGGACCAACc
aacactttcttttgtcattttatagatttcttttgtttgtgtCTGAAGAG
AAGAAGATTTCGTTTTGGGTAGTCATccatttcaaaaattatcttaGTGT
TTCTTAAAAGAGTGTCTTTTCATCCAGCCAGGACTTCCTTGgtctttttt
atataagtttGCATAGAATAAAAACCTACCTGATTAACACAGCTGCATAG
TTTGCATGCCCCCTTTTTAATATGTAGATGGAAAATTTGTAGGAGAACTT
TGTATAGGGGGTAGAGATTTGGTAAACTTTATCATATACAAATGGTCACA
GTCTGTTTTATCCCGAGGATATccatacccctctgcaaactatgcaGCTA
AACTCTCTGTCAACAACATTGGCTATACTCGTAGGTTTTAAAACATAAAT
GTTTTACAAATAATGAACCTCTTATGACTTCTCtcaaataaatcaatcaa
aagCCTTCTGTTAGGTTTCATTCCATATATTTTTATCCACATGGTGTACT
GATGGTTTCCCTAATTTCctcaataattaaaaattggaactttcctgTGG
GTGGGTGCGATTGGGCGTAACACCAATGCAGTTTGATATTgatattgaca
tatttaatgatgtcatattCAATGCTGTTTATAtttttgtcagcgccgtg
cattAAAGTTTTTGGATATTCAAAACCCCCCGCAAACATTTTGTTCCATA
AGTACTCTCTCTCAGAGAGAGTAGAGTAGTGAATGCTCTCTAAGTACTGA
ATAGAGAAGTCCTTCTTTTCATTCCCAATGCTGTATGATTCAGAATGCTC
TGAAATCACAGATGTCCTAGGTTTTTGGAATACACAAGATAAGGAAACAT
AAATCTATTGCCTGCGACTACTGCTTAGATAAATGCACCTTTCTTATTAT
CTTGCACGTgggtaaaggccacatttttggtacacTGTCCTTTCCGTTAC
GTTTTTAAACTTATTCCGGTCATAACTAAGAAATCAAGCCAAAGTACtaa
aaacttttaacttttttttgttctatGATAAGATACccctttaaaaaata
taatgtgACTATCTATAAATAATTTCTGCACCTTTGAGGTCCCTTTGAAG
TCCAAAtatctcaatttttctttaaaaaataataaaaaattgaacttgat
cttaatttttttttctctaggGCATAAAACCTACTCAAAAAGTTAACTTC
ATTCGCATTCACAAAAGAGGAGACTTTTGCATCAGATTTAATCATGATAT
CGTGTATCTATTGCCCAGCAagcaaatttttctaaaatgtacAGTTTGGT
ACCCTGattttgtcccttccgttacgctagTTACTTTTAGTCAAAATTAC
CTAGTCAAGTTTACTTTTTGGGCCTCTTCTTGTCAGTTTATCATTGGGAT
GTTCCCAGATTCCATTTTCATgctctcatctaatttctaagctcagtttt
ttcaaaaattgttcctGACATGGGAGATGGTCACCaaatttgtcccttcc
gttacgcatGTGTGATTTGGAATATTTAGTCAACTGATTCGCAAGAATCA
TTTTCCTTTGGTGTAGTTTCTATACCCATTGGACTACTTATTTTCATAAA
AGTATTTCTGATTTAGAATTTGTCTCATGGAGATGCTGTGAAGTGAATCT
TGTTGTCCCTTCCGTAACgaatgtcccttccgttacggaaattttttata
aatgctaatatgataaaaattctgagacttttttgttttttctgttcaaa
aCTAAGGtatttgaagacattgcaatgtgtTTCAAGCTGAAAAGGTTTGA
AACACTTCAATGACATTTGATGCagtttgatgaaaaataagCAGAAAAGT
GTCCCTTCCGTTACTTACCTTATCGGATCGGGCGGGTTGCCCGGGCCAAT
GAAACTCGATCCTTCTAGCCGTCTCTATCCATCATAGCTGTCTTGAGGTT
TTCTGGGGGCAAGTCAGTGTCGCGGGAGATAACGTCCAGATACGTGATTT
TTGGACTTCCAACAGAACGACGACCATGTCTTGGGCTCCAAAGAATCAGC
TCGCTGACCAGCTCATCTTTGCTTCGGAAACAGTGGCCTGCAAAACGCAA
GCGTCTTTCACAGATTAATGTGGAATTGTAGGTATATTCCCGTATAGCTG
TTCTTTTCTCGGGTGTTGTTGCCATGAGATGTTTAGAACTGCACGCAGCA
TCCGTGTGTACGTTCCATCTAGCATCTNGTGTTGTTGCCATGAGATGTTT
AGAACTGCACGCAGCATCCGTGTGTACGTCCCATCTAGCATCTTTTCGTG
TGCTTTGGTGAGCGTCCATGCGGCTGAGCCATATAGTAAGATAGACTCTA
TAACAGCTCTGAAGAAATTGCGTTTTAGGTCTTTACAGAGGTTTGACTTC
CATATAACTTGCATCTTATTGAGTGCAGACCATGCTTTGGCGATTCTGAT
CTTGATATCTTTCTCCGTGGAGGAAATCTCACTTCCAAGGTATACGAAAC
TGTCAACGTTCTTTAACGGGTTTCCGTTTGCTGCCTTAATCATAATGTTG
TTAGCTTGATTAAAATTCATTGCTTCAGTTTTCTTCTTCGTTTGGCTTTC
ACTCCTTCTAGCAGCCTCCTGACTGTTAGAATCTGTCCTTGTGTATATCT
ATTAGGTCTAAAGCCATTTTGATTTCGTCGGAGCACTTTCTCTAGTTCTG
GAAGGATTCTGTCACGAAGAAGggaattgtaaatttttgaagcaatgcAG
GTTAACGTGATTCCTCTATAGTTGTTAGGGAGAGATAATTCGCCTTTTTG
GGGAAAGGTAGGATGCAACCTTTCGTCCAGTCcgatattttgttttgttg
caGAAGATAATCATTAAAACGACTGGTCTTCCACAATTCTGGTGGTATTC
CATCAAGACCAGCAGCTTTGTTGTTTTACAactttttaataactttttct
aGTTCATCCATACTAAAAAGTCCTTTTTCAATAGGAAGTTCATGATCAAT
CACGTTTTTTATCTCCTCATTGACAACATTAGGACTTTTCCCCAGTAAAT
TAGAAAAATGTTCTCTCCACTTGTCGAgtctttcattttgactttctCCT
TTGAGTTTTGCTTGCGGTGTACCCTTTCGACCGCTAATGTCGTTCACGAT
TTTCCAGGCTGTCGCAGATTGCTGTTTGTCAGTTGCAGTCTTAATCGCGT
CAATCTGTTTCTGTATGTATTTTGTTTGCTCGGAATGGTATGTATTCTCA
AGTTCTTTCCTGGCTTTTACGTAATTTCTTATATTGCGCGTAGATGGATT
TCTGTTTTTAATTACGTTACGCTTTACGTTACGTTACGCTTTTATCACTT
AGTTGGTATTTTATGAtagtaccgggtgacccacgaaaaagttcggacag
tTTTCGGCGTctcgaggccgaacaaatgtctcaaagtgcttgaaatttta
atatgtaGAAATAAGATATTCTAACTTAAagtttgagctattacttttta
aaattgacccACAAGTtccctacttatgagcttttaaagtcaaaattcac
ttttcggaaagagcgaaattacgtcaaaaaagaggtatcaaattgtttta
ttatcaatcaatcaagcaaGGTCGTTAAATCGTTAGAAAAGAGCatgtta
gatatttttattcaattttaaaaaattttttagattctttactttCACAG
AATTTATTAACAATAAGTTATTCGTTCAGAAAAGAACCACCACCATACAC
TTTCTAGCATATTCCAGGCAAACCCACATTCTCTGTTCTTTCATAAGACG
Cgacattttcataaagaaggcaaattttgcctatttgcaaaatatttttg
ataaaaatatttacaataaatttatataaatctacttcgttgttaattta
ttattttacaaactttaaTTAACTACAACACTAATCAACGAGGTCGCACA
CTCGAAAAACACAAtgttaaagataaaaaaacaattataatttgatacct
catttttgacgtgtttttgcaCTCTCCgataattgaattttgactttaaa
agctcataaatgaagaaccactgaaccaaatttaaaaagtaatagctcaa
agtttaagttagagcatcctctatcattaaaaaaaaaagattaagttTAT
ATTACCTTTATTTCAGACCCTAGCCAACGAAAactgtccgaactttttcg
tggatCACCCGGTATTTATCATAGTTTTGGTAGATTTGTTAGACCCTTTA
ATTAGCTTCCTTCTATTATACCCAAAAAAGATGTTCCattgttaaaaata
agttaaatattttaaaaaaatgacataTTACAAAATGATTTACACATCAA
CTGATaatttgtcccttccgttacacAAAATACACTCTaccgtcaacttg
aaaaatatttattcaaattttatcagTGGGATTGATTCAACAACTCTGAA
GAAGCATTTTTCAATAAATGTCTTTCTTTAAATTGCAATATATAAGGAGA
AAAACCTAATCTCCATTGGTTTATTGATAAGGGTTAAAAACTTGACCGGG
TGGCAATTAGAGCTACAAACCTTTTATAAAACAATGTTATTGAGGGACAC
GCAATTGATTATCATGATAGAACCATTACTtaatataaataaataagttt
agAAGCTTTTTGAGGATAAATATTTTCTAgtgtaacggaagggacaggtg
taccaaaaatgtggcctttacccACGTGCAATCATTAGGTTTGAAATTGT
CAACTAACCTCAATTCTTTATTGTTTAGTTGCAAACAGCAGTGTAGCTGT
AAACCTTCATATTTACAGGAAAGGGTGTTTCAACCCAATGCAACACGTAA
TTTACGTTTCATCTAGTCCGATAAAGgcattaaaaaatcatttttttgaa
gtttgcaaaaaaccgccatatattaaaaaaatgattgacaaatTGAAGTT
TTTCCTCCTGTAAGTGTTTAGAGTTGCACTGTACAGATTTGTAATATAAT
CTAAAATGCTTGCAAAATCCAAAGCATTTTGGTCAGTGATTGTTTCATTC
TAAAAATTGAATTGGCTTTTGGCTGAAGTTAATTTTCAAGGTTTAAAATC
AtaattttgcttaaaatagAGCTAGGTCATTCCTTTGCTTTAGGATTTTC
AATTAACATAGCCTCAAAGCCAGCAGAACTTGATGCAGCTAttgagatat
tttcgtgttcaGCCTCAGCTAGTCCGAAACGCAGGTCATGATAGTtttaa
ttctttgaaaaggtagtattttgagaaaatttttacattgaaGAGAGCTT
TTTCCTGACATAAACActatttattttgatttcacCAATCCATAGAAAAA
GCATATATATGAAAGAACGATGTCAGCCTCTGAACCAGCCCCCGTAGAAG
ATGTTCAAGGTGATGGACGGTGGTCCAGTATGGTGAGTtgctttattttt
ttaagaaaccaatattttattttagtttgaacGTTTCTCTTTTTGATGAA
CCCAATGTTTTAAGTCATGGTCCTCTTCAAACACTCACTTTATTTCCTAA
GGGGCTGCGAAGCCCAAGAATTGTAgtgatgattttttttaccaaaaatt
caattttgatcTATTTGAGAGCCGTTGATTCGATAGCGTTTTTATAAAGC
ACTTTATATTGTTTTGCATTCTATTCATTGGGTCGGGATTGattcatttt
caataaaactcaAATAGAAGAAAACTTGAGATTGacgaaaaataacaaag
aaGTTTTTAtatatagtagggggccaagcctggggttccgtgacatcttt
tctatgacctagccatttttggtctattccaaagaacagtatattacaaa
atatttttgagagggagacgcggattaggcccgggaaaattttttatgac
caaaatagtgacgccatatgcaaaactgcaagggaaaataaggggtagag
aaatagcttattttttaaagtcaaaataaacgaaaattatttgtaccatc
tgatagagcatgaaactccgagcaaaaaattatattacaacaactctctg
actaaaacacacaatggcgtatggcgtcactatttttgtCATGAAAAGTT
TCCCGGGCCTTTATttgcgtcctccctctcaaaaatatcttgtaatatac
tgttcttttgaatagactaaaaatggctaggtcatagaaaagatgtcacg
gaacccaaggcttggccccctactaataaacatttaaaaaaaatggttgT
TTGAGGCATATTAACATGTTTcatctttaaatttttagcaTCAAAGGCAA
GTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTGGAGACTC
ACTTATTCAACGTCTAGAAGATACTGAGGTTTCCTTTGTCTGCCCAATAC
TGTATTGTTATtaccatagtgtcctccagggtttgttccccccactaaat
tcttgatttttttaaatctccctcctctttttttttgcccctacagtata
tggcccccaaaacggcgatcaaatttgaaatttctctcaaatctagagga
aaagagattttacaaaaatttttgctgtataaaaacctttaacatctcta
ctttatttcctggaagttctttttcaaaattttcaatttcaacaatattt
ttcaatcgctttaagataggtagcttttttctaatggcccccaaaacgga
ggtttgaaattttagcgatttctcgagttatctttaagatatgaatacag
aattttgaccatagttttgaaatatgatttagagggttttgggcataaat
ttatttgataaaatttttacagtatacccctggttgtcaaaatgcaggtt
tggggcccccaaaacggaggggtagttaaaatcaaattattaaggccagt
ggtaatagggggaaaaacgatgaacatatttgtgttttcccttaaattga
CGActcgatggatgtaaaatttatgattttaatgaaatatttgaagattt
tcgatattgcaaagtccaaactgaaaatttagaaattttcaaaatgacaa
ttttgatttaacaacgtctcaatcaagtttttgaaaacaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgaaaatagttccattcatgtatggaataagctgtgaaaatt
ttagaaaaaaagctcaactgaaactgaaaatattaagctttaaagatatt
tttctcctatattttgcaaaaaattgacagaatttgctgtttttgctgat
tcagcgaaaaattttatatataatgttaattttttgttataaactattaa
ctcaaggtaataggaatagaattccaagatcttttctttttctcatattt
agaattttcggttttgtcaaccacgcatgctggaaaaactggaaaacctg
gaaaaactggaaaaatggcctttttctgaaaactagctggaaaaactgga
aatagGTACATTTTCCAAACAGGaaagctggaaaaactggaaaagctttt
ttgaaatttcaatttcaactttATGTCAGGAATTGGTTAGAATTATTATG
TGATTATACatatatataattttcataAGATGTTATCTAGTATGagttta
gccattttcagtttaGTTCATCAGACATTCTTTTGTCAAAGCATAGATCT
CTATgaccgatttgaaagaaatgtcttttgaaaatctagaagtaccagtg
gataccccttaaaacctacaaagctGCACTATGGGCTCTCTTAGCCAcca
aattcaattcaatattgTTTAGTTCACTattttacaacctcttataaatg
tactttcataaaatacctaatttcgAGAATTTCAATTATCgcaaagtgtt
ataaaattcaaagttatctaaattttatcaagaatcacatcaaaaaataa
gtggccccccactttttggtagaccatgtcatacgtttttaagagttact
attttaagctggtttgagaccaaatcaaaccacatAAACTATTATTCTTC
CCAattagatatcgttttaaggtgttttgagggtgtaaaatgtgaaaaat
cttcttcgtcgcccaaccatggtgggcgacattctttttccaaaatgttg
gctccctcactcaaaatggctcgccggggcccatacgatggctagccacg
atggctaaaaAGATCTATAGAATATCTACAAGATCTATAAGAATatgaaa
atataattcttcTAAGCCATTTACTTAATCGTGGTTAAAGATTGCAATGc
attgttatcttttttctcatttctttcataaaatgaaaTACCACAGACAG
CGTACTTTCAACACATAAAGTTTCAGCCTAAAATTCCACCTACGTTTTCT
GATAGAGGGtacctttatttttttgtaggtTTTGAGGGGTATCCGCTGGT
AATGATTTTGCACTCGCTTATAGCTGGAAAAAAGTACAGATTTTTGGGTT
AAGGCTGGAAAAAGGTACATTTTCCAGCTGAAAATACCTGGAAAAAAGGA
TGTTTTTGACCCAAAAAGCTGGatttttcatctaaaataaGTGTGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
tccgtctcaaaccagcaaaaacatgctcattcttaagtataaccatcatt
ctttcaaaataaacaaaaatcgtttaattctgataaatctgcAAGTCAGA
AtctttattttaataaaaaccTCCGtcttgggggccgtctccgttttggg
ggccatatactgtatgacttttcagttttttagtttcccccctcttttgc
tttacccccagaaaattctgaaaatatcagttccccccatatacccatat
aaacttctcaaatttcaacctgacacaaacggAACGAAAATGGGTTCCTA
CTGTAGATGCTAAATGCAACATATTCAATAAACAGAAAAACTATAGGAAC
AATAGGAATTTTCAAATCAGTTCTTAGCAGAATATTTTTATCAGAAAATA
ACAATTTCTTTGTTTATTCAGACGTGGGAAGATACAATTAAACCATTGAA
TGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGAACATGTTTTATGGC
GACTACAAAATGGCCTTCTTCAACATTGTAAACCTAAAGTATTTTTATTA
TGGTTTTTCAACAATATTCACGACTCTCTGATTGACTTTATTACACTTAT
GTAtgttttattgacaaaatttcTTACTCCTAAAAACTAttacttttatt
cttttatcctttttATAATCATTTGTCACAAAAAGTTATTGCAGCGAATT
TTATAGCCTCTAGAAGGAAGCTCGTTGGGGTCGGAAACTTTTTTCCACCT
CAGCGCACCGTGTTCTAGAGGCTATGACTTTTGACACAATagttttaagt
aaaaaaaaatatataaatttaatCTTGTCAcgttatattttgttttctcc
AGGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTCATCTGAT
GAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAGATGTACT
GAAAGACACTAAGATCGTTCTTATCGTAAGAATCATAACGTTCTCCTTTA
AAATACTGAAATTATTATCTTAACTGTATATTCGAACTTGGTAATTTGAA
tctctttgtaattcgaacaaacaAGATTCCCTGTTCGAATTCGAATCCAC
GAAAGTCGACTTTAAAAGACTAACCCTTTGACGGAAATCCCTCACAATCC
CATGTTGCTCTATTTTTAAGTCTGCCAGTGGCTTTGACGGATATGGCTCA
GATAATTGCACTGAGTCGTAAAAATTTATGATTTGTTGGTCCAGGATACA
ATAGATATGATGAAACTTTCACCGCGCTGAATCTAaaaatagattttatt
tttgacataatcattactctcgatgtgtttgtacgagttccaatcccatc
aacctttgcgttaatctcttttgtACGTTAATTACATAATTTGACAAAGG
ATATTtaacaacttgcacgtatctttgattgagccgcattgaattgtggg
attgcaactcgtacaaatgtctaaaaaagtgaaaagtaataattatgacg
tatatgttgcggagcgctattataatacaccttttcgaccgtagccgcca
attaccgcgcgggcatttttttgtccgcttcaTCCCAccaaaaccgtccc
agtccttttttcgcacctatagacaatagaaaaatgtgtcaaaaaagggt
tggatcgagtttaaggggataattaaataattaagtggcacgcgcctgac
cgcgcgactacggtcgaaaacgATAATTGATATATCTTTTCTGAAGGCTT
TGCTACCACGTGGAGAAAAAGACAATCCATTGCGTAATAAAATCTATCAA
ATCAATTACGGTATCGAACAGATTATATCAACCATTCCGAACACTCATTT
AATCAATGCTGACCCTGGGTTTGTTCGTTCAGATGGTGTCATCTTTCCTG
AAGACATGGCTGACTATTTACATTTAACACGCCGCGGGTATAAGAAGTTT
TGTGTCCCCATCATGTCGTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAA
AAAGGAAAAAGCTTTTAATAATAGTATTTATACTTTCCATGAGTGAAGAT
TTGTTGAACAGCTACttcgataaattttttttaagcatGTATAAAATCGT
AATTAGGNAATAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAA
CAGCTACttcgataaattttttttaagcatGTATAAAATCGTAATTAGGT
TTTTAACAGTGGCTCTATCTCTAAAGATCTAATCTTTAAGCATTACAGAG
TCTGGCAAGGGAAAGACACTTTAAAAAAACTGTATTTGGACTATGCAgca
ctgcaatgtcttccacggacccaatagctgattggttgaaagtgacgtaa
aatcaatcaatactTCACTtgtaaccaatcagctgttgggtccgtggaag
acattgcaatggtgcatatcatgaagaCGGACCAAGCTGCAAATGAGGTA
TTTTCGAGATTACTTCGACGAAATTTAGTAAACACTTTAATTGATACTTT
GATGTCCTCGATTTCAGCGTTTGCATTTTGTTGACCTCTAACAATCAAAT
CGATTTGGTATTTGATTTTGCAATTTGTTCTGTTTGTTGGGAGCAGATGT
ATTTAATTCTGGTAGTCAAATTGTTTTGGCATTTTTATATTAATCAAAAC
Gaattttcttgaatttattagataaattttcattttactaaataactaaa
aatgacaatataattttttgtaACTCTTCGttaatcattttttattttta
catgcaGTACATTAGAATATTTCTTTAAAGTCTATTTATATCATCGATAA
TTCATCCATGAATTTTTAgtatatctttttaattttacgtTATAAATTTC
CTTCTAGAAGATGAACATTCAATAAATAGTTTGATAACATATATTTCCAT
TGCTCCAAttatttaatgttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031678XLOC_031678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049999-exon-scaffold_167-1491911889:1817022..1817166TCONS_00049999-exon-scaffold_167-1491911889:1817022..1817166Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1510915933:1817022..1817166TCONS_00049999-exon-scaffold_167-1510915933:1817022..1817166Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1575043694:1817022..1817166TCONS_00049999-exon-scaffold_167-1575043694:1817022..1817166Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1491911889:1833210..1833299TCONS_00049999-exon-scaffold_167-1491911889:1833210..1833299Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1510915933:1833210..1833299TCONS_00049999-exon-scaffold_167-1510915933:1833210..1833299Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1575043694:1833210..1833299TCONS_00049999-exon-scaffold_167-1575043694:1833210..1833299Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1491911889:1836443..1836559TCONS_00049999-exon-scaffold_167-1491911889:1836443..1836559Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1510915933:1836443..1836559TCONS_00049999-exon-scaffold_167-1510915933:1836443..1836559Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1575043694:1836443..1836559TCONS_00049999-exon-scaffold_167-1575043694:1836443..1836559Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1491911889:1836874..1836996TCONS_00049999-exon-scaffold_167-1491911889:1836874..1836996Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1510915933:1836874..1836996TCONS_00049999-exon-scaffold_167-1510915933:1836874..1836996Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1575043694:1836874..1836996TCONS_00049999-exon-scaffold_167-1575043694:1836874..1836996Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1491911889:1837768..1838945TCONS_00049999-exon-scaffold_167-1491911889:1837768..1838945Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1510915933:1837768..1838945TCONS_00049999-exon-scaffold_167-1510915933:1837768..1838945Clytia hemisphaericaexon
TCONS_00049999-exon-scaffold_167-1575043694:1837768..1838945TCONS_00049999-exon-scaffold_167-1575043694:1837768..1838945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1817022..1838945 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.32053	8.1065	24.2917	25.2099	2.86464	6.37556	5.63959	8.04421	7.47647	6.82248	4.01035	5.50802	3.62477	7.29595	5.29426	6.31579	3.04998	4.32903	2.61308	1.71817	3.67273	3.3089	13.3551	11.0121	4.80797	3.94038	7.63127	7.04079	11.7787	11.0407
Blast
[Close]
BLAST of TCONS_00049999 vs. Swiss-Prot (Human)
Match: PA1B2 (Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.043e-55
Identity = 87/200 (43.50%), Postives = 132/200 (66.00%), Query Frame = 2 
Query:  143 EHQRQVESCRLQKPNVLFVGDSLIQRLEDTETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCKPKVVVILCGTNNHQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFCVPIMSCVKKFLQEDAKKEKA 742
            +H R V  C+ ++P+VLFVGDS++Q ++  E W +   PL+A+N GIGGD T HVLWRL+NG L++ KPKV+V+  GTNNH+++++E+   +EAI   +       KI+++ LLPRGEK NPLR K  ++N  ++  +  + N  L++ D GFV SDG I   DM D+LHLT  GY K C P+   + + L+E  ++++ 
Sbjct:   27 QHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQT 226
The following BLAST results are available for this feature:
BLAST of TCONS_00049999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PA1B23.043e-5543.50Platelet-activating factor acetylhydrolase IB subu... [more]
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