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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050016 ID=TCONS_00050016|Name=TCONS_00050016|organism=Clytia hemisphaerica|type=transcript|length=1271bp
ccttagagagactttgggagggtgaaaaaccctacccttaaggcacgcac
atacccagcacccatttttgcctaagtaccccccccgggggctCATGTTG
CCTCGATCTTGCTCCAAATGCCTGTATAACTTGTATACCTATCGACATAT
GTAGAATTACACGTATATTTCAAAGATGCAATAAAAAAGCAAGAAAGAAT
TTCTGTATAATATCAAAAGTTTGAAGTATGTCAGTATGTAAGTAAGGCCC
TTTGAAGTATTACTATTTTGATCCCTCTACTACGAGTATGCTCTTTGTTG
GCAGGTTAAAAACCTTTGAAACCTCATCAAAGTGTGGATACTTTTGCTGA
GGACCTTTATATGATTTTTCAGTACAACATAGCCCACcatgtttaatttt
tttcaacgaACAATTTGTATAAGTTAAAAAAGAATATAAAATACCAATCG
TAAAAAAGCCAAATCCCACCAAAAAACAATATTACTTTGTTTTCCCTTGT
CGTGCATTGCATAGTAGAATCAAGTTTTGAACTGCGGACAGCGTAGACAT
ATCATTTTGGCCAGTGATAACATGTCGGTCAATCACCACATGCATACAAT
CGTTCTTACTATGACTATAAACTCCGTCTTTTTCTTTAATCGTGTCTTCA
ATTACTAAAGGTAATTCACCAAAATTGTCCAAAAGGGCCATCTCATAAAC
AGATGACCCTGTCATTGAATATTCTTGAAACGCCCAGGAAGTCTTATCTT
TAGCTTTTGCGCCAAATAATGCTGCTACACCATAACCGACTGCACATATa
ggtttcatttcatttttgaaaatctctaCAATATTTTGTAAGTCTTTATT
CTCCACCAAATCATACATACATCCCAACCCACTGGGGATCAATAATGCAA
CATACCTTAGAGGTTCGATATCTTCTAACTTACTAGGTACAGAGAATGGT
TTAGATTTAAATTCATTCAACCAGCGTCGACTGTTATCATCGATTTGTGC
AAATTCAATAGCTTTTCCTCCTGGGGTAGCAATAACAACATTAAACGCCG
AATGTGTCAGTGTAAATGAATGGATAAAAGATTGGGCTGATACACCATAA
cctgaacctgtacaaaccatCAAACAATTCGGCTTCTTGTTAGCCAtagt
cttttttaaattttatacacttttatatctgaaaatataaaaagaaagaa
atattaaaGAACATGTTCAATAAAAAACTTAATGTAGTATTAAAATAGTT
TAGTTCTTTTGATTTTATGAG Run BLAST on NCBI transcript from alignment at scaffold_167:131378..132703- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050016 ID=TCONS_00050016|Name=TCONS_00050016|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at scaffold_167:131378..132703- (Clytia hemisphaerica)
CCTTAGAGAGACTTTGGGAGGGTGAAAAACCCTACCCTTAAGGCACGCAC
ATACCCAGCACCCATTTTTGCCTAAGTACCCCCCCCGGGGGCTCATGTTG
CCTCGATCTTGCTCCAAATGCCTGTATAACTTGTATACCTATCGACATAT
GTAGAATTACACGTATATTTCAAAGATGCAATAAAAAAGCAAGAAAGAAT
TTCTGTATAATATCAAAAGTTTGAAGTATGTCAGTATGTAAGTAAGGCCC
TTTGAAGTATTACTATTTTGATCCCTCTACTACGAGTATGCTCTTTGTTG
GCAGGTTAAAAACCTTTGAAACCTCATCAAAGTGTGGATACTTTTGCTGA
GGACCTTTATATGATTTTTCAGTACAACATAGCCCACCATGTTTAATTTT
TTTCAACGAACAATTTGTATAAGTTAAAAAAGAATATAAAATACCAATCG
TAAAAAAGCCAAATCCCACCAAAAAACAATATTACTTTGTTTTCCCTTGT
CGTGCATTGCATAGTAGAATCAAGTTTTGAACTGCGGACAGCGTAGACAT
ATCATTTTGGCCAGTGATAACATGTCGGTCAATCACCACATGCATACAAT
CGTTCTTACTATGACTATAAACTCCGTCTTTTTCTTTAATCGTGTCTTCA
ATTACTAAAGGTAGTTCACCAAAATTGTCCNTCTTTTTCTTTAATCGTGT
CTTCAATTACTAAAGGTAATTCACCAAAATTGTCCAAAAGGGCCATCTCA
TAAACAGATGACCCTGTCATTGAATATTCTTGAAACGCCCAGGAAGTCTT
ATCTTTAGCTTTTGCGCCAAATAATGCTGCTACACCATAACCGACTGCAC
ATATAGGTTTCATTTCATTTTTGAAAATCTCTACAATATTTTGTAAGTCT
TTATTCTCCACCAAATCATACATACATCCCAACCCACTGGGGATCAATAA
TGCAACATACCTTAGAGGTTCGATATCTTCTAACTTACTAGGTACAGAGA
ATGGTTTAGATTTAAATTCATTCAACCAGCGTCGACTGTTATCATCGATT
TGTGCAAATTCAATAGCTTTTCCTCCTGGGGTAGCAATAACAACATTAAA
CGCCGAATGTGTCAGTGTAAATGAATGGATAAAAGATTGGGCTGATACAC
CATAACCTGAACCTGTACAAACCATCAAACAATTCGGCTTCTTGTTAGCC
ATAGTCTTTTTTAAATTTTATACACTTTTATATCTGAAAATATAAAAAGA
AAGAAATATTAAAGAACATGTTCAATAAAAAACTTAATGTAGTATTAAAA
TAGTTTAGTTCTTTTGATTTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050016-exon-scaffold_167-1575043694:132044..132703 | TCONS_00050016-exon-scaffold_167-1575043694:132044..132703 | Clytia hemisphaerica | exon |
| TCONS_00050016-exon-scaffold_167-1575043694:131378..131988 | TCONS_00050016-exon-scaffold_167-1575043694:131378..131988 | Clytia hemisphaerica | exon |
| TCONS_00050016-exon-scaffold_167-1510915933:132044..132703 | TCONS_00050016-exon-scaffold_167-1510915933:132044..132703 | Clytia hemisphaerica | exon |
| TCONS_00050016-exon-scaffold_167-1510915933:131378..131988 | TCONS_00050016-exon-scaffold_167-1510915933:131378..131988 | Clytia hemisphaerica | exon |
| TCONS_00050016-exon-scaffold_167-1491911889:132044..132703 | TCONS_00050016-exon-scaffold_167-1491911889:132044..132703 | Clytia hemisphaerica | exon |
| TCONS_00050016-exon-scaffold_167-1491911889:131378..131988 | TCONS_00050016-exon-scaffold_167-1491911889:131378..131988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:131378..132703 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029062 | Class_I_gatase-like |
Blast
BLAST of TCONS_00050016 vs. Swiss-Prot (Human)
Match: GALD1 (Glutamine amidotransferase-like class 1 domain-containing protein 1 OS=Homo sapiens GN=GATD1 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 5.654e-72 Identity = 106/213 (49.77%), Postives = 150/213 (70.42%), Query Frame = -2
Query: 497 KPNCLMVCTGSGYGVSAQSFIHSFTLTHSAFNVVIATPGGKAIEFAQIDDNSRRWLNEFKSKPFSVPSKLEDIEPLRYVALLIPSGLGCMYDLVENKDLQNIVEIFKNEMKPICAVGYGVAALFGAKAKDKTSWAFQEYSMTGSSVYEMALLDNFGELPLVIEDTIKEKDGVYSHSKNDCMHVVIDRHVITGQNDMSTLSAVQNLILLCNARQ 1135
+P CL+V +G+ GVSAQSF+H FT+ +AFN+ +ATPGGKA+EF + +++ RW+ +F+ K ++ P+KLE I+ RY ALLIPS G + DL + L I++ F +E KPICAVG+GVAAL A +D+ SW F YS+TG SV E+ F LPLV+ED +K+ +S S+ D +HVV+DRH++TGQN ST+ AVQNL+ LC +R+
Sbjct: 9 RPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDR-SWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRK 220
The following BLAST results are available for this feature:
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