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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050036 ID=TCONS_00050036|Name=TCONS_00050036|organism=Clytia hemisphaerica|type=transcript|length=594bp
TTTGGACATTGATGTTGTACATCATGTAGATGGAAGGATGATATACAGAA
TGAAGAAAGTGGGACACTCGAATGAATTGTCGGTCAAAATCATAACAATC
TCCACACTCTTTGAAGATCTTGATATCTAGATTCGATTTCAAACATCCAA
CTCGAGCATATTTTCCAGTGTAATAATCATATTTATGGTACTCAGCTATC
AAATTATGGATAGAGATTGCAACAAAGATTGTCGTTAGGAgtaaaattac
agaccagaagaTTGATTCTCTTCGGTTGCCCTTGAAAACTCGAGTTAATC
CGTGGATACTGAACGAGTTGATGTATTCTTCGATTTTCGTTTTGATGACC
ATTTTACTGGTCATCTGGTTTTCATGCCATATGTTGTCTTCATCGCTTTC
TTTCATTTCTTCTGGATCAATCAGCATGTGCTCGTCTTTGTAGTATTTTA
CTATGTATAAGAAATAAGAATCGAAGGTTAGTTGGTAATTTTTGTATACA
TACATAAAGCAGCAATTGAACCTCTTACAGGGTTATAaattctcgtaaaa
tgtttatcaaaatttgaagatttcgGCTGAAAGTTGCAAAATAG Run BLAST on NCBI transcript from alignment at scaffold_167:367273..372617- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050036 ID=TCONS_00050036|Name=TCONS_00050036|organism=Clytia hemisphaerica|type=transcript|length=5345bp|location=Sequence derived from alignment at scaffold_167:367273..372617- (Clytia hemisphaerica)
TTTGGACATTGATGTTGTACATCATGTAGATGGAAGGATGATATACAGAA
TGAAGAAAGTGGGACACTCGTAAGTGTAACCTTTTTTTAAAGTTGTTAAA
TTGTTATTTTCTTTTTGGTGTCTGATAAACGAGGAGGATCTAATTCCGGG
GGTTGGGTGGAGAGGATAGAATCTATCCTTCTGAAAACACTAAAGATTAC
TAAAAAATAAAGGTACGATTTTTCTTCAAACACCTGAAAAATACTTTGGA
AAATAGGGTCCTTGAAATTTTATTACAAAAGAAAGTAGCTATCACATAGA
GGCAAATTGTTTCGCTTACACTTTTGCCACTTTTGCCCTTGTTCCCACTT
CTGCCACTATCATGTTGAAACATTTTTAAAAAGTGTGAAAAGTGGCTCCT
TCAGCTAACTTGTGCCAGGCAATGTGTAAAAACGAGACCACGTTCCTTCT
AATACGGGCCCGAAACAGTGGTCCTTCTAGGTAAAATTCCGACGGAAACA
GAGCCTTATTCTAGGTCTTTATATTACATTTTCAATCGATACAACATAAA
TTATGCCTTCTGCCATCTTTGAATAAATTTATTCTCTAGTTACATAGCGA
CGGATAATTAATACAAAATTAAAATCAAATTTATGCATTCGAAAGCTGCC
ATTTTGTTTACCACTTTTCACACAAACTGCGCGAAACAAAACAAATTTGT
TTTTTGCTTAGTGGAGATTGAGAATTTAACACAAAGGACACAAACGATCA
TTTGGAATTAGGTGACAAAAATGTAAGCACTNAGTGGAGATTGAGAATTT
ACCACTTTTAACACAAAGGACACAAACGATCATTTGGAATTAGGTGGCAA
AAATATAAGCACTTTTGCCACTTTTAGACACATTTTGTAGAAACAATTTG
GAACCTGGTGGCACTTGGGGCAAAAATGTGAAAAATAGCAGCGAAACAAT
TTGAGAAAGTGTCTACTTTGCATTTATTGTTTCATTTTCAAAAAAAAGTT
AAAACGCATGTGTATTTATAAACTGTTAGTCGTTATTATACGCCATACTT
CACTTCTTCACAAGGCCGTGGTTATTAAGGTGATGTAAAGTTTAACGTTT
TAAAACTCCGAATAAAGTTCTTTTCAATGGAATTTTTGCGATAATATTTT
TCTTTAATGTCATCAGAAATGAATTGCCGGTCAAAGTCTTGGACATCTCC
ACAGTTCTTAAACATGATATTATGTTTCTTGCATCAAGCCTTGAATGACT
AATCTCCCTGGGAACTTTATCTCCACCTTTTTCATCAACACAGTTTGATG
AATATGGCTTTGGGAGCCTTTTAAAGATTGTTTTCTCAAACATAATCTCG
TATGTTTGGGAGGGTTTCAGCTCTACTTTTGAATCACATATATTCTTACT
TGTTAAAGGACTGAAAAGTTATATCATGTCCTAATCTAAATGACGATGGA
TTTTTATATTTGAAATTAATAAAAAGTGATTTCTCCTTCAAGCTACCATG
ATAGTTAAAAGTTATATACAAGTGTCATTCATAAGGCTAGTTGGCTGAAA
ATATTTACCACTAAGACAGGCTTGTTTGGCACCCAATCCATTACAAATAT
TAGAAACTTACTATTGGTCCAAAATTTATTTTTTCGTGTTTGGACTTTGA
TCTTATTTGATTTGGATATTTCTTCATAGTTGCATGGTACAGATGTGTTC
TTTCTTATCGGCACCTCCTGCAATAGGTCACCCAGAATATTTTGAATATT
CCCTGAACAACAACCTTTTGTTGCAAAATGTTATACTTGGAAATAGATTC
TCTTCTTCCGGCCGGGCCCTGGCCCGACCACATTTTTTCAAAGCAAAAAG
AAAATTTACTAATCGAGCAAAATTCCGTTTAACCTTTTAAACCTTAAAAC
AGACCTGTTTTAGGCGATCTAGAAGGGTCAAAATTTTCGCCCGTGGCGCC
TTCTTTGCTACTACATCATGACCCTATCACTTTCAAAGTGGAGCCGCGGC
CCATGGAGGATATTTTGAAAATGTAAATGAAGATGAAGAAAGTGAAAATT
TATCTAGATTTTCTTGTATGTATACTTTCCCAAAACCTACTTTCTCTATT
AAAGCTGAAATAGGTCCATTTTGAACATTTTTATCATAATTTATCGCCCA
TTTGGACCTTTTTGGAGAGCTATGACTTCTGATCGAAAAATATGTATCAA
ATATTTTAATACAATTTTAAAAATCAGTGATATGCAAAGTTTTAGAAGAG
TATAACAATTTTTAACCAATTAGATTAGAAAAGATCTTTCTTTTTTTTCA
TCTTTATTTTCGAAAGCTACAATGCACTAAATATTTTCAAACGAGCTATT
ACTCTGAATAATACATTTTCAGCCACCAATTCTTTTGGAATAGACTTTTG
CTTTTTTTATTTTTGAATTGACTTTATCTCGTGTCAAGAGTACCTTCTAA
TCATAATTTTCTGTATTGGGCTCTTCTAGAAAAAAAATTGTACATGGGGG
TCGGAGGATATTTTGTCCGGGGGGTAGCGGAAAATCATCAAAATTTGCCT
TGTCCGGGGGTAATTTGGGGTGTCTGGGGGGTCAGCAGATGCTTGTCCGG
GGGTAAAACCTATTGTCCAGGGTGCCAAAAGTCACCCTGTTCGGAGGGTA
AATCACTAAAAATTGTTATATCCTCCACCCCTCATGTACAATTTTTTTCT
GGAAGAGCCCATTGAAATTTTCTCCAGGATTTCCTTTCCTTAATTATATT
TCAATTGCTATAATGTTAGAAATCATGTATACAAATATCAAAAAAAGAAA
TACAAAAATTTTACGGACAAAATAATTTTTATATACTGAAGAATCTCTCG
CGAAGCTTCTCTCAGAACCTCAAAATATCTTATGTATTATATATATTATG
TAAGAATATTGAACCTAACCGTTTTAGTAATTTCCCAAAAATCATTGAAT
AAGTCTGATAGAAAGCTATTGTAAATGAAATGGCTAGCGATTTTTTAAAA
ATATTTCTCCAATTTCTTATATTCAANCGTTAGTACCTGAAATGGCTACT
AGTAGCGATTTTTTAAAAATATTTCTCCAATTTCTTATATTCAAACAATT
CAAAATGAAAACAATTTCTAGAAATCAAACATTTAGGTTCGAGAAAGGGA
AAAATTCGAATTTGAGATAGATGAAAAGGAAATTCTACTGTAGTTCTCTA
AATTAAGTGGGATGCACTCTTTTATAAGCATAACGTTTATAAGCATTCTT
AGGCTCAAATCCGGTAAGAAATAAGCATAATGCTAATCATACCTCCAAGC
CGAAACGCAAAAAAAATCGTGCAGCTTTTCTAAACGAATAAGCATAAATT
AAGGCTAAAAATGAGATTTTGCTAATCATATTGAGCCTCAACCCGATTTT
TCCGTATGCTTATAAAAATAGTGTATTTGGCATTATCGGCGATCCAAAAT
ATATCTGCAGTCTGATTGGTTAAAAAGAGTACAATATATCTTGTATTTTA
CATGTAAAAATATAAATTAACAAAAAGATGTTGTTGTATTGTAGCGGTAG
CAGCAATCTAACGTCACTTTGCTACAAAAGTGCTCTGCGTTTTTTTCCAA
AACAAAAAGTGCATTTTTTGGGTCACCGATAAACCAGTTATCAGACATTT
GCTCGTACAATATGGAAATATTTCACTCGTTCCGGATTTTCCGTATATTT
TCCTCGCCTAAAGGCTGGTAAAATATTGTACGGGAAAATCGCGGAACTCG
CAAATGTCTGATAACTATTACATATTTAGCGTTTAATAGTACACTGTTCT
TTCAAACTGCATTGTCTTTTAAATACATTTATGAACAGCCAGTAAAACCA
AATAAACTATGATCTCTACAAAAGAGATGATGGATGCTCCAATACAAAAG
ACCAAGATTGCTCCAATCCTACTGAACAATTGAGAAACAGTGTAAATAGG
CTTTTCTTCAAATTCTTTGTGCTCGTCAAAGATTTTACTTCTGACATGAA
GCCAATATCTTATTGGACCAACATCACCAGAATAATCAAAATCACTTTGT
TCTCCTCCAAATAGTACAAGCGAAGTGTCATATCTGATTTCGTCACATGG
TTTTGNGTCCTCCAAATAGTACAAGCGCAGTGTCATATCTGATTTCGTCA
CATGGTTTTGGGCAATCTGGAACAGACATATTCATTCTGTTGAATCTATG
AATACAACCAATAGCCTCAGCTATAGATTGTTGGCGGCTGTACTTTTCTT
TTGTTTCCTCAGGAATGAATTGTCGGTCAAAATCATAACAATCTCCACAC
TCTTTGAAGATCTTGATATCTAGATTCGATTTCAAACATCCAACTCGAGC
ATATTTTCCAGGTAAGATATCTTCACCTTTGTCAGCTACACAATTTGATG
GATAAGGACTTGGCAATCGTTTGGTGACGATTTTCTCATAAGTTATTTCT
ACTTCTCGTGATGGTTGTAACATGACTTTAGAATCAACCAAACTCTTCAG
TGGATTAACATTTGTTTCGTGAATAGTAAGAGCTAAATCGTCTCTATTGT
CGCGATTTTGTGATAAACTCATATAGGCCCAAGCATCTTGTAAATGACCG
TCATAATTGAATGTTACACAAGCATCCTCAAGAAAGCTAGTCGCTTTGAA
AAACGATTTATTTAGACAATCCTGTCCAGTTGCTAAAGCTTGGCAATTCG
AGATATTAAAAGCACCATTGGTCCAAATTCCATGTTCAACTTCCTCAAAC
TCTGCTTTAGTGGGTTTAATATTCTCCTGATCACAGATTATGCTTCTATT
TCCGTGTTCCCAAGATGGTTTCCCACAATAAGATAAACGTGTTTCCCTTA
ACTTAGCTTGATTACAAATAGTAATACTTGGAAAGACGTGCTCCTTTGTT
AGTTTATCTCTCATTTCAGTGTAATAATCATATTTATGGTACTCAGCTAT
CAAATTATGGATAGAGATTGCAACAAAGATTGTCGTTAGGAGTAAAATTA
CAGACCAGAAGATTGATTCTCTTCGGTTGCCCTTGAAAACTCGAGTTAAT
CCGTGGATACTGAACGAGTTGATGTATTCTTCGATTTTCGTTTTGATGAC
CATTTTACTGGTCATCTGGTTTTCATGCCATATGTTGTCTTCATCGCTTT
CTTTCATTTCTTCTGGATCAATCAGCATGTGCTCGTCTTTGTAGTATTTT
ACTATGTATAAGAAATAAGAATCGAAGGTTAGTTGGTAATTTTTGTATAC
ATACATAAAGCAGCAATTGAACCTCTTACAGGGTTATAAATTCTCGTAAA
ATGTTTATCAAAATTTGAAGATTTCGGCTGAAAGTTGCAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050036-exon-scaffold_167-1575043694:372549..372617 | TCONS_00050036-exon-scaffold_167-1575043694:372549..372617 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1575043694:368257..368355 | TCONS_00050036-exon-scaffold_167-1575043694:368257..368355 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1575043694:367273..367698 | TCONS_00050036-exon-scaffold_167-1575043694:367273..367698 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1510915933:372549..372617 | TCONS_00050036-exon-scaffold_167-1510915933:372549..372617 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1510915933:368257..368355 | TCONS_00050036-exon-scaffold_167-1510915933:368257..368355 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1510915933:367273..367698 | TCONS_00050036-exon-scaffold_167-1510915933:367273..367698 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1491911889:372549..372617 | TCONS_00050036-exon-scaffold_167-1491911889:372549..372617 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1491911889:368257..368355 | TCONS_00050036-exon-scaffold_167-1491911889:368257..368355 | Clytia hemisphaerica | exon |
| TCONS_00050036-exon-scaffold_167-1491911889:367273..367698 | TCONS_00050036-exon-scaffold_167-1491911889:367273..367698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:367273..372617 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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