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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050041 ID=TCONS_00050041|Name=TCONS_00050041|organism=Clytia hemisphaerica|type=transcript|length=2504bp
TAATAGACATTAACATTACCAGTGTTTTAAAAATCTAGGAACTCGCAAAT
TTATTGAAAGAGCTTTTGGATTTTTAATCTAAAAAGTTTCGtattttttc
aaggaaaattaagAGAAAGCTATCGCAGATCAACGAAGAAACTTATCAAA
AACAGACAacaatttcatgcaaaaaaccTTTACTGTTAAAATGACTTCTC
TTTAAGATAcacaaatattattttcatgacAATAAACATTTGGTGGAGGA
AGGCTGCGAAACAAATTCAATTAATTCTTCACCAATATCTATTAACTTTG
TTTCCAGGGTGATGCCTGGTTTCGTAACAATCTTTGGAGTAGACCCGAAA
agctttttctctttttctaagACTTGTGCAATGTTTCTGATTCTATTGGA
TTTGAAGTTGGTAATTCGAAATGAACGTTGGTGGATGGTTAAATCAGCTT
TAATCGAAACCAATACCTGCAACATTGCATATAATTTAATTGAAATGGTT
TCTGAAAGTTTCAGATGCCAAAGTTGGTCATTGTCATCAAATCCAACTAT
ATTCTCACCAAATTTCCATAAACAGTTTTCCACACTTAGGATTGATATAA
TGGAAGACGGATGATTGGTAATTTTTGATACTTCCTTCTTAATATCTGAA
ATTGTATCTGTTTCCTTCATATTTAAATCGATAGTTTCACTGTGAAGATG
TCCAGCACATTTGATAACTACTTGTAATTCTTTTGCTGGTTTGACAATCA
AGTTAAGAGTAATCGAATCATTTTCTTTGACATCTgttaaaagtgaaaat
atttccataaaACCTTCCAACTGAAAATCACTAAATTTGTAACAAAACAG
TGATTGCAAATGTGGTGCAATGTCTTTTATTTCATAGATTGTTCTTTTGA
GTTCTCCAACAGTTAACAGATTTTCTTGCTGAAACAAATCTATTGTAAAT
TGACCTGTCAGAAATTTAACGTTAATTTCTTTCAAGTATACTAAATGATG
CATTTCACAAACTTCTTTGACCCTTTTATTGGGTAGGACGAACAAGGTTA
ACTCGatgttttccaaaatttcattttctctgATAAATAAGCTTTCTATG
ATAGTATCTTTGCCTAACTTGTTACCATCATGTGCAAGCCAAATTTTTGT
ATAGAAAAGTTCTCGATGTTTTTTAATAATCTCATTGCACACATCTTCAG
GATCGACAAAAGATTCCCATTGCGATAAGGGTAAACTACAGAAAACTGAA
CCGGTATTAGGGCATTTAATAATAATTGAACCGACTCTAGATAAACCTAA
TGGTTTAAGGTGTTTCAATAAGTCTGTTTCATCATCATCTACTTGAATTG
CTAGTCTGAtttctttaaatctaaaaatgtcaatttgTGAATATTTGACA
GGATTTTGatttacaaagaaaataaaccTTTGTAGATCTTTTCGAATTCC
AAAGGTTTCATGAAGAAAATCATTAAGAGATGGTCCATTGTTCCCTCTAT
AATAATACCAAATATTTTCCTTGTTTCCACTAACAATTTTTAAAGGGTCC
ATCATTTTTATATCGTTCTGACATAAATTTCCTTTAACTCAGTTTTGTCA
GTGTAATGAACGTATAGTTGAAGCTCCACATTTTCTAGTTGATAAGATCG
ATCGAGCCAGACACGTGACAAGTCTTCGTTATCGGTAAAAATTGGTCAGT
CACGATATCCAATAGTCTGTTCTTCAACAGGAATCTGATACATGTCTTTG
ATCCATACTTTTATGTCCTCAGGATAAAAAGAACCTATATCGAATATTGG
ATATCCGATTTGCCTTATAGCTTCTATTCCTTgcattgaaattttgattt
cacgGAATTTGATATTGATTGTAGTATTTTCATCATCATTCTCAAACATA
TCGAATATACAATCATCCACTGTGATAACTACGATATTGAAAGAGAATTG
AGTATACTTTAAGAATCCATCCAGGAATAAATCGACCAACAATTGATTGT
CTGTGAGAATCATAAGTTTACcataaataaaatttattctgTTAGTCGat
tcttttatccttttttcAGCATAAACTCTTTTTTTCAGATCTAGTACCGT
TGTATTGATATCCAAATCTTTATAAATAATTTGACAGGATTGATACAAGT
GTCTAGATAAATCAATAATTTTTATATTCCTTATTCCTGAACTTTTTTCC
AAGGCAAGATTTCTACGGGTATGCACTAAGGTATAATCAATCAAGTTACC
AGTACTATCATCAATAATAACATCAAGTTTAATATCAAACTGCAATCGTT
TTTGATAAAGTTCTTCAAAAGTTTCTGTGTTCAAAATAATTCCTTGATGT
TCAATGCCTTGACATGAAGCTGGAATCTCATAACGtttttcaatactttt
cttcaaattgtCATATGAATCTGCATCACACCAGTAAAATATGGAGGGAG
GATTGTTGCCAATATTCACAGTcaaatgatttttcatttttatttttatt
ttct Run BLAST on NCBI transcript from alignment at scaffold_167:407618..415050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050041 ID=TCONS_00050041|Name=TCONS_00050041|organism=Clytia hemisphaerica|type=transcript|length=7433bp|location=Sequence derived from alignment at scaffold_167:407618..415050- (Clytia hemisphaerica)
TAATAGACATTAACATTACCAGTGTTTTAAAAATCTAGGAACTCGCAAAT
TTATTGAAAGAGCTTTTGGATTTTTAATCTAAAAAGTTTCGTATTTTTTC
AAGGAAAATTAAGAGAAAGCTATCGCAGATCAACGAAGAAACTTATCAAA
AACAGACAACAATTTCATGCAAAAAACCTTTACTGTTAAAATGACTTCTC
TTTAAGATACACAAATATTATTTTCATGACAATAAACATTTGGTGGAGGA
AGGCTGCGAAACAAATTCAATTAATTCTTCACCAATATCTATTAACTTTG
TTTCCAGGGTGATGCCTGGTTTCGTAACAATCTTTGGAGTAGACCCGAAA
AGCTTTTTCTCTTTTTCTAAGACTTGTGCAATGTTTCTGATTCTATTGGA
TTTGAAGTTGGTAATTCGAAATGAACGTTGGTGGATGGTTAAATCAGCTT
TAATCGAAACCAATACCTGCAACATTGCATATAATTTAATTGAAATGGTT
TCTGAAAGTTTCAGATGCCAAAGTTGGTCATTGTCATCAAATCCAACTAT
ATTCTCACCAAATTTCCATAAACAGTTTTCCACACTTAGGATTGATATAA
TGGAAGACGGATGATTGGTAATTTTTGATACTTCCTTCTTAATATCTGAA
ATTGTATCTGTTTCCTTCATATTTAAATCGATAGTTTCACTGTGAAGATG
TCCAGCACATTTGATAACTACTTGTAATTCTTTTGCTGGTTTGACAATCA
AGTTAAGAGTAATCGAATCATTTTCTTTGACATCTGTTAAAAGTGAAAAT
ATTTCCATAAAACCTTCCAACTGAAAATCACTAAATTTGTAACAAAACAG
TGATTGCAAATGTGGTGCAATGTCTTTTATTTCATAGATTGTTCTTTTGA
GTTCTCCAACAGTTAACAGATTTTCTTGCTGAAACAAATCTATTGTAAAT
TGACCTGTCAGAAATTTAACGTTAATTTCTTTCAAGTATACTAAATGATG
CATTTCACAAACTTCTTTGACCCTTTTATTGGGTAGGACGAACAAGGTTA
ACTCGATGTTTTCCAAAATTTCATTTTCTCTGATAAATAAGCTTTCTATG
ATAGTATCTTTGCCTAACTTGTTACCATCATGTGCAAGCCAAATTTTTGT
ATAGAAAAGTTCTCGATGTTTTTTAATAATCTCATTGCACACATCTTCAG
GATCGACAAAAGATTCCCATTGCGATAAGGGTAAACTACAGAAAACTGAA
CCGGTATTAGGGCATTTAATAATAATTGAACCGACTCTAGATAAACCTAA
TGGTTTAAGGTGTTTCAATAAGTCTGTTTCATCATCATCTACTTGAATTG
CTAGTCTGATTTCTTTAAATCTAAAAATGTCAATTTGTGAATATTTGACA
GGATTTTGATTTACAAAGAAAATAAACCTTTGTAGATCTTTTCGAATTCC
AAAGGTTTCATGAAGAAAATCATTAAGAGATGGTCCATTGTTCCCTCTAT
AATAATACCAAATATTTTCCTTGTTTCCACTAACAATTTTTAAAGGGTCC
ATCATTTTTATATCGTTCTGAGCATAAATTTCCTTTAACTCAGTTTTGTC
AGTGTAATGAACGTATAGTTGAAGCTCCACATTTTCTAGTTGATAAGATC
GATCGAGCCAGACACGTGACAAGTCTTCGTTATCGGTAAAAATTGGTCCG
TCACGATATCCAATAGTCTGTTCTTCAACAGGAATCTGATACATGTCTTT
GATCCATACTTTCATGTCCTCAGGATAAAAAGAACCTATATCGAATATTG
GATATCCGATTTGCCTTATAGCTTCTATTCCTTGCATTGAAATTTTGATT
TCACGGAATTTGATATTGATTGTAGTATTTTCATCATCATTCTCAAACAT
ATCGAATATACAATCATCCACTGTGATAACTACGATATTGAAAGAGAATT
GAGTATACTTTAAGAATCCATCCAGGAATAAATCGACCAACAATTGATTG
TCTGTGAGAATCATAAGTTTACCATAAATAAAATTTATTCTGTTAGTCGA
TTCTTTTATCCTTTTTTCAGCATAAACTCTTTTTTTCAGATCTAGTACCG
TTGTATTGATATCCAAATCTTTATAAATAATTTGACAGGATTGATACAAG
TGTCTAGATAAATCAATAATTTTTATATTCCTTATTCCTGAACTTTTTTC
CAAGGCAAGATTTCTACGGGTATGCACTAAGGTATAATCAATCAAGTTAC
CAGTACTATCATCAATAATAACATCAAGTTTAATATCAAACTGCAATCGT
TTTTGATAAAGTTCTTCAAAAGTTTCTGTGTTCAAAATAATTCCTTGATG
TTCAATGCCTTGACATGAAGCTGGAATCTCATAACGTTTTTCAATACTTT
TCTTCAAATTGTCATATGAATCTGCATCACACCAGTAAAATATGGAGGGA
GGATTGTTGCCAATATTCACAGTCAAATGATTTTTCATTTTTATTTTTAC
TCTGAAAGAAAAAAAGGACAAAAATTGATTTATTTATTGTTTATCATTTT
CAAGCGTCGTGATTGCTTATATCTTTAAGAAAAAGATAGCTGATACCTAA
CAAACACTCTTCTTCTTTTACAAGAACAACACAATAAGAACTATTAGGCT
CCAAAAATGTCAAATAATAAGAACAATATATAAGAACAACCATCAGCCTG
AATTAGTTGAATTTTGAGCAAATTAATTGCTTAAATCTCAAGATAGGAAT
AAAAGTAAACAAGTACAATGCATATTGGACCTACCTGATGATAAATGATA
TAGAATGGTAATAAAAAAAGTAAGTAAAATAAGAAACACCATATTTCAAG
CATTTCGACCGGAAAAAATTTTTCTCAAAAATCCAAATCAACCATGTTTT
GGACATTGCTAATACGCATCTTTGTGCAAAAATCATAAAAACTGATATGA
AATCTCTAAAAAATGCCAAAAACTGGTTTTCCAGCATATTTCCGGTAATT
TAGGCCGGAAAAGCATGTTTGTTGAGAATCAGTCACATTTTAAATATTGC
CAATTTGCATCAGTGTTCAAAACTTTATGAAAAATATTAAGTACAGCTCG
AGAAATTCAAGTAAACTTGTTTTTCAGGCGATAATGGATTGTTCCGCATG
GCTGGAACCCCCCCCCCCTGGCCTGAGGGGGAGGGGGCTAAAAGGTCGAG
CAGCAATTGGTACCTGATTTTAGCCTGTGGCTAGGGGTTAGGGGTCACCT
AATTTTTTTCCGATGGACCTTGGGGCTAGATTCTATGTTTGGTGATTGAA
TTATAAGCAGCCTACCAGACCATAGGGTTGGCACTTTCTCTTCTTATATT
TTAATCTAAGCAATGCTCAAAAACTGACAATTTGGTATCTAATGTATTAT
CTGCAGTGCCGTAGCAACTGGGGGGGGGGGGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGACGTTTTCGAAAATTTC
ATTTTCTCTAATGAATAAGCTTTCTATGATGGTATCTTTGTCTAACTTGT
TACCATCATGTGCAAGCCAAATTTTTGTATAGAAAAGTTTTTGATGTTTT
TTAATAATCTCATTGCACACATCTTCAAGATCGACAAAAAATTTCCATTG
CGATAAGGGTATACTACAGAAAACTGAACCGGTATTAGGGCATTTGATAA
TAATCGAACCGACTCTAGATAAACCTAATGGTTCAAGGTGTTTCAATAAG
TCTGTTTCATCATCATCTACTTGAATTGCTAAATTGATTTCTTTACATCT
AAAAAGGTCAATTTGTGAATGTTTGACAGGATTTTGATTTACAAAGAAAA
GAAACCTTCGTAGATCTTTTCGAATTCTAAAGGTTTCATGAAGAAAATCA
TTCAGAGATGGTCCACTGTTCCCTCTATAATAATACCAAATATTTTCCTT
GTTTCCACTAACAATTTTTAAAGGTTCCATCATTTTTATATCGTTCTGAG
CATAAATTTCCTTTAACTCAGTTTTGTCAGTGTAATGAACGTATAGTTGA
AGCTCCACATTTTCTAGTTGATAAGATCGATCGAGCCAGACACGTGACAA
GTCTTCGTTATCGGTAAAAATTGGTCAGTCACGATATCCAATAGTCTGTT
CTTCAACAGGAATCTGATACATGTCTTTGATCCATACTTTTATGTCCTCA
GGATAAAAAGAACCTATATCGAATATTGGATATCCGATTTGCCTTATAGC
TTCTATTCCTTGCATTGAAATTTTGATTTCACGGAATTTGATATTGATTG
TAGTATTTTCATCATCATTCTCAAACATATCGAATATACAATCATCCACT
GTGATAACTACGATATTGAAAGAGAATTGAGTATACTTTAAGAATCCATC
CAGGAATAAATCGACCAACAATTGATTGTCTGTGAGAATCATAAGTTTAC
CATAAATAAAATTTATTCTGTTAGTCGATTCTTTTATCCTTTTTTCAGCA
TAAACTCTTTTTTTCAGATCTAGTACCGTTGTATTGATATCCAAATCTTT
ATAAATAATTTGACAGGATTGATACAAGTGTCTAGATAAATCAATAATTT
TTATATTCCTTATTCCTGAACTTTTTTCCAAGGCAAGATTTCTACGGGTA
TGCACTAAGGTATAATCAATCAAGTTACCAGTACTATCATCAATAATAAC
ATCAAGTTTAATATCAAACTGCAATCGTTTTTGATAAAGTTCTTCAAAAG
TTTCTGTGTTCAAAATAATTCCTTGATGTTCAATGCCTTGACATGAAGCT
GGAATCTCATAACGTTTTTCAATACTTTTCTTCAAATTGTCATATGAATC
TGCATCACACCAGTAAAATATGGAGGGAGGATTGTTGCCAATATTCACAG
TCAAATGATTTTTCATTTTTATTTTTATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050041-exon-scaffold_167-1575043694:413480..415050 | TCONS_00050041-exon-scaffold_167-1575043694:413480..415050 | Clytia hemisphaerica | exon |
| TCONS_00050041-exon-scaffold_167-1575043694:407618..408550 | TCONS_00050041-exon-scaffold_167-1575043694:407618..408550 | Clytia hemisphaerica | exon |
| TCONS_00050041-exon-scaffold_167-1510915933:413480..415050 | TCONS_00050041-exon-scaffold_167-1510915933:413480..415050 | Clytia hemisphaerica | exon |
| TCONS_00050041-exon-scaffold_167-1510915933:407618..408550 | TCONS_00050041-exon-scaffold_167-1510915933:407618..408550 | Clytia hemisphaerica | exon |
| TCONS_00050041-exon-scaffold_167-1491911889:413480..415050 | TCONS_00050041-exon-scaffold_167-1491911889:413480..415050 | Clytia hemisphaerica | exon |
| TCONS_00050041-exon-scaffold_167-1491911889:407618..408550 | TCONS_00050041-exon-scaffold_167-1491911889:407618..408550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:407618..415050 - |
Blast
The following BLAST results are available for this feature:
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