TCONS_00050072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050072
Unique NameTCONS_00050072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050072 ID=TCONS_00050072|Name=TCONS_00050072|organism=Clytia hemisphaerica|type=transcript|length=2639bp
AAACTATGCAGATTTCTTTCTAAGAAGCAGTTCATTCTCAAGATATAAAA
GTCCTCAAATTTACTTTTTATCGTCCTGTTTGGTCTCTTGGTTAGTCAAT
CAGTTGTTGCCAAGCTTTATGAGTGAAGGTTCTCGGTTCCTTTTAGTTTT
TCTGTACATTATAACACCATGGTCAAAATACTTTGTCATTTGAAACAGCA
TGATAAATATTcattaaacttttattttagACATATATACaagtacaaaa
aaaaaaaaaaaatcagcaaacATGTCTGCAGGTATGGTTGGAGTACCTGC
CATTGTACCCCTTAAGATGCCTGGCTTTGGTGCAACTGGTTCACGAAAAT
GGTCAGTTGACACAAAAACATTGATAGAAATGCATTCTTCTACTAAAGGA
TGTATAGTGTTTTTTACTCTTGATGGAACTAAACCTGATCCGTTTAAGAA
GATTGGTGACAAGACTACATATCAATATACAAAACCCATCACTTTGCCAA
GAGGTAAACGAACATTGAAAGCTATTGCCATGCTTAAAGATGGTTCTAGA
GAGAGTAATGTGAACACCAAAGTTTTTACAGTAACTGAAGCTCCTGTAGA
AGAGGAAGAggagaaaaatgataaatttaacACAACTTGGCAATGTCAAG
ATGATTCCGAAGATGAAGAAAAGATAGATCAGAAGATGTTCAAGAAAGTC
ATGAGAACAAGTGAGGAAAGAGCACCACAAGAGAAAAAAGATCCTGTTCG
TAAAATTTTGACTGGTGAAGTTGATGTAGATAAAAATGATACAAGATTTC
AAGATATACGTGAAGAAGAGTATCTAATGTGTGTTTATTGTGGGGAGCCG
CGTCCTGCTGATCCTTATGCTCGCTTTTGTAATGGATGTAAATCAATCCT
CCCACCAGCACCTGGTCGTATCAGATCCTCCTATGGAAACTCTTTTGCAA
ATGCTATGATAAAATCATCCTCCAAACAAAAGATTGAATGTAAAAATTGT
GGGACAACCAATTTGTCAAATGCTGAGGTTTGTTTGGTTTGTGATTCCCC
CATGATGAACGGTGTCtcaaaatcgaaattgaaaaaCCAAAAAGCACCAG
AGCCTGCAAATGATTTTATTATCTGCCCTTATTGCACAAGAGTAAATTGT
GGAAATGCACGTTATTGTGATTGGTGTGGGGAAAGATCAAACTCCAAAAG
TAGAACCGCTGTTTGTCAACGTTGCTCCACAGAGAATTTGGTTAGCTCAC
AGTATTGTTCTTCTTGTGGGAAAAATCTACCAGCTCCACAACGAGATAGT
CTTGAGAAAATCCTTGAGAAAggtgatttgaaaattaaaacaggAAATAA
AACCAGTAAAGGACAATTAGGATTACTGGAGAAATTGACTGAAGGTGAAG
AGCAGAGTGGTTCATGGAAAAGTATTGAATTTGAGTCAGTCAATCGTAAG
GAATCCAAAAATATTGGTATACAAGCTGGTGAATCCATTATCCCCTCAAT
GCAAAAAAGCTCTTTGAAAGATCATCCTAAAAACAGTCCTGGTAAGGGCT
ATTGGAGACAACAAACTGATTATGTGTCACAGCATTTGAAGATCTATACT
caaaataatattgattttCGTGAGCAGTTTAGTAATCAGACATTATCCAA
CTTGGTGAGTTGTTCTTTAGAGGATGATGAAGAGGAACGATTGAAGCACC
TTACTTTATCTTTTTCAATCCCAGAATCCNAGTTGTTCTTTAGAGGATGA
TGAAGAGGAACGATTGAAGCAccttattttatcattttcaatccCAGAAT
CCTctaaaaaatcacagaaaaaaggTAAGAAACATCAGACCATTAACTCT
GGTGAAACCTTGATTAATGCGTTGAAGAAATCTTCCATCTCAGGATCTCG
GCCATCATCTGGTCGCAGTAGACCAGCATCTGGAAGATCCTTCACTAAAC
AGAGCACCAGAGATGACTTTGATTCACCTAGAAGTCAAAATGGCTCTCGA
CCTTCATCAGGACGAAAACCAAAAACTAAGAAAACTCTTGACAAAGAAAA
GCTTGATGCTTTCTATGCAAAACTTTCTGAGGATACAAAAGAGCTTCTCA
AACTTATCAAAAGTCCGAAAACCCCTAATCTGGAAACAGTGGAGTTGTTA
TTAGATTCAGAGGATATTGATGTGAATGTGCGAGATGAAAATGGAATCCC
CTTATTAAAGCTAGCAATCATGAAtaagcattttgatattttgttatCTC
TCATTCTTTCTGATGTTGATATCAATGCTGTTTCTGGAGCAAAAAATGAC
ACAGCACTCCATGAAGCTGTTTTAATGGGTGTAATGGGGAAAGATGCTGT
TGAAATTCTCTTGGAAAACGATGCTGCTTTTGATATTCTTGACAAGAAAG
GACAGTCAGCTCATGATTTAGCTGTCACTCTAAATGTTGATGCAGTCCTG
GCTATCTTCAGTCAACATACGTCGAAAGGTTTACTGAATGATGTCAtgaa
actttaattttaaacatGACAGCTTATGGCTAGGGTCAAATGAAGACTCT
TTTTGTACATTGAAGTTGTTCAGTAGGATTTCTCTATTTATTATTACTCT
TGTCCCATTCTAGTCCCAATCTTTACTAAATGACGCCAT
Run BLAST on NCBI

transcript from alignment at scaffold_167:798947..801585-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050072 ID=TCONS_00050072|Name=TCONS_00050072|organism=Clytia hemisphaerica|type=transcript|length=2639bp|location=Sequence derived from alignment at scaffold_167:798947..801585- (Clytia hemisphaerica)
AAACTATGCAGATTTCTTTCTAAGAAGCAGTTCATTCTCAAGATATAAAA
GTCCTCAAATTTACTTTTTATCGTCCTGTTTGGTCTCTTGGTTAGTCAAT
CAGTTGTTGCCAAGCTTTATGAGTGAAGGTTCTCGGTTCCTTTTAGTTTT
TCTGTACATTATAACACCATGGTCAAAATACTTTGTCATTTGAAACAGCA
TGATAAATATTCATTAAACTTTTATTTTAGACATATATACAAGTACAAAA
AAAAAAAAAAAATCAGCAAACATGTCTGCAGGTATGGTTGGAGTACCTGC
CATTGTACCCCTTAAGATGCCTGGCTTTGGTGCAACTGGTTCACGAAAAT
GGTCAGTTGACACAAAAACATTGATAGAAATGCATTCTTCTACTAAAGGA
TGTATAGTGTTTTTTACTCTTGATGGAACTAAACCTGATCCGTTTAAGAA
GATTGGTGACAAGACTACATATCAATATACAAAACCCATCACTTTGCCAA
GAGGTAAACGAACATTGAAAGCTATTGCCATGCTTAAAGATGGTTCTAGA
GAGAGTAATGTGAACACCAAAGTTTTTACAGTAACTGAAGCTCCTGTAGA
AGAGGAAGAGGAGAAAAATGATAAATTTAACACAACTTGGCAATGTCAAG
ATGATTCCGAAGATGAAGAAAAGATAGATCAGAAGATGTTCAAGAAAGTC
ATGAGAACAAGTGAGGAAAGAGCACCACAAGAGAAAAAAGATCCTGTTCG
TAAAATTTTGACTGGTGAAGTTGATGTAGATAAAAATGATACAAGATTTC
AAGATATACGTGAAGAAGAGTATCTAATGTGTGTTTATTGTGGGGAGCCG
CGTCCTGCTGATCCTTATGCTCGCTTTTGTAATGGATGTAAATCAATCCT
CCCACCAGCACCTGGTCGTATCAGATCCTCCTATGGAAACTCTTTTGCAA
ATGCTATGATAAAATCATCCTCCAAACAAAAGATTGAATGTAAAAATTGT
GGGACAACCAATTTGTCAAATGCTGAGGTTTGTTTGGTTTGTGATTCCCC
CATGATGAACGGTGTCTCAAAATCGAAATTGAAAAACCAAAAAGCACCAG
AGCCTGCAAATGATTTTATTATCTGCCCTTATTGCACAAGAGTAAATTGT
GGAAATGCACGTTATTGTGATTGGTGTGGGGAAAGATCAAACTCCAAAAG
TAGAACCGCTGTTTGTCAACGTTGCTCCACAGAGAATTTGGTTAGCTCAC
AGTATTGTTCTTCTTGTGGGAAAAATCTACCAGCTCCACAACGAGATAGT
CTTGAGAAAATCCTTGAGAAAGGTGATTTGAAAATTAAAACAGGAAATAA
AACCAGTAAAGGACAATTAGGATTACTGGAGAAATTGACTGAAGGTGAAG
AGCAGAGTGGTTCATGGAAAAGTATTGAATTTGAGTCAGTCAATCGTAAG
GAATCCAAAAATATTGGTATACAAGCTGGTGAATCCATTATCCCCTCAAT
GCAAAAAAGCTCTTTGAAAGATCATCCTAAAAACAGTCCTGGTAAGGGCT
ATTGGAGACAACAAACTGATTATGTGTCACAGCATTTGAAGATCTATACT
CAAAATAATATTGATTTTCGTGAGCAGTTTAGTAATCAGACATTATCCAA
CTTGGTGAGTTGTTCTTTAGAGGATGATGAAGAGGAACGATTGAAGCACC
TTACTTTATCTTTTTCAATCCCAGAATCCNAGTTGTTCTTTAGAGGATGA
TGAAGAGGAACGATTGAAGCACCTTATTTTATCATTTTCAATCCCAGAAT
CCTCTAAAAAATCACAGAAAAAAGGTAAGAAACATCAGACCATTAACTCT
GGTGAAACCTTGATTAATGCGTTGAAGAAATCTTCCATCTCAGGATCTCG
GCCATCATCTGGTCGCAGTAGACCAGCATCTGGAAGATCCTTCACTAAAC
AGAGCACCAGAGATGACTTTGATTCACCTAGAAGTCAAAATGGCTCTCGA
CCTTCATCAGGACGAAAACCAAAAACTAAGAAAACTCTTGACAAAGAAAA
GCTTGATGCTTTCTATGCAAAACTTTCTGAGGATACAAAAGAGCTTCTCA
AACTTATCAAAAGTCCGAAAACCCCTAATCTGGAAACAGTGGAGTTGTTA
TTAGATTCAGAGGATATTGATGTGAATGTGCGAGATGAAAATGGAATCCC
CTTATTAAAGCTAGCAATCATGAATAAGCATTTTGATATTTTGTTATCTC
TCATTCTTTCTGATGTTGATATCAATGCTGTTTCTGGAGCAAAAAATGAC
ACAGCACTCCATGAAGCTGTTTTAATGGGTGTAATGGGGAAAGATGCTGT
TGAAATTCTCTTGGAAAACGATGCTGCTTTTGATATTCTTGACAAGAAAG
GACAGTCAGCTCATGATTTAGCTGTCACTCTAAATGTTGATGCAGTCCTG
GCTATCTTCAGTCAACATACGTCGAAAGGTTTACTGAATGATGTCATGAA
ACTTTAATTTTAAACATGACAGCTTATGGCTAGGGTCAAATGAAGACTCT
TTTTGTACATTGAAGTTGTTCAGTAGGATTTCTCTATTTATTATTACTCT
TGTCCCATTCTAGTCCCAATCTTTACTAAATGACGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031706XLOC_031706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050072-exon-scaffold_167-1575043694:798947..801585TCONS_00050072-exon-scaffold_167-1575043694:798947..801585Clytia hemisphaericaexon
TCONS_00050072-exon-scaffold_167-1510915933:798947..801585TCONS_00050072-exon-scaffold_167-1510915933:798947..801585Clytia hemisphaericaexon
TCONS_00050072-exon-scaffold_167-1491911889:798947..801585TCONS_00050072-exon-scaffold_167-1491911889:798947..801585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:798947..801585 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18986	1.35608	0.682928	0.405421	10.2979	8.16511	6.64312	6.64247	3.01425	4.852	3.37126	2.55563	4.09757	3.05276	2.63632	3.42467	3.68548	3.74327	4.5008	3.99513	3.30315	2.6849	2.04191	2.69377	5.36092	5.24606	2.8918	2.24335	1.15054	1.22981
Blast
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BLAST of TCONS_00050072 vs. Swiss-Prot (Human)
Match: DZAN1 (Double zinc ribbon and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=DZANK1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 7.802e-40
Identity = 121/412 (29.37%), Postives = 192/412 (46.60%), Query Frame = 2 
Query:  272 MSAGMVGVPAIVPLKMPGFGATGSRKWSVDTKTLIEMHSSTKGCIVFFTLDGTKPDPFKKI--GDKTTYQYTKPITLPRGKRTLKAIAMLKDGSRESNVNTKVFTVTEAPVXXXXXKNDKFNTTWQCQDDSEDEEK---IDQKMFKKVMRTSEERA---------------------------PQEKKDPVRKILTGEVDVDKNDT-RFQDIREEEYLMCVYCGEPRPADPYARFCNGCKSILPPAPG-RIRSSYGNSFA-----NAMIKSSS----------------------KQKIECKNCGTTNLSNAEVCLVCDSPMMNGVSKSKLKNQKAPEPAND---FIICPYCTRVNCGNARYCDWCGERSNSKSRTAVCQRCSTENLVSSQYCSSCGKNLPAPQRDSLEKIL 1315
            M+AG V VP I+PL++P     G     +D  TL+EM S T    +++TLDG+KP+  K+I  G+  T++Y KPITLP GK  +KAIA+ KD  R+S + TKVF V   P      +++  N     +D S  E K   +  K+ KK   +  +R+                            ++ + P    ++G+  +   +  R Q  RE ++L C +C  PRP+DP+ARFC  C S +PP  G R+    G          +++  ++                      K+K+ C+ CGT N ++   C+ C+  + +   +S     KAP P       I C  C R N   A +C WCG      +  +VC +C   N +S+++C SCG  + +  + SL++ L
Sbjct:    1 MTAGSVCVPQIIPLRVP---QPGKANHEIDNNTLLEMKSDTPDVNIYYTLDGSKPEFLKRIGYGENNTFKYIKPITLPDGKIQVKAIAVSKD-CRQSGIVTKVFHVDYEPPNIVSPEDNVENVL---KDSSRQEFKNGFVGSKLKKKYKNSENQRSWNVNLRKFPESPLEIPAYGGGSGSRPPTRQSQSPGFAHVSGQKCLTSTEIMRIQ--RETDFLKCAHCLAPRPSDPFARFCQECGSPVPPIFGCRLPPPEGAQMGLCAECRSLVPMNTPICVVCEAPLALQLQPQASLHLKEKVICRACGTGNPAHLRYCVTCEGALPSS-QESMCSGDKAPPPPTQKGGTISCYRCGRWNLWEASFCGWCGAMLGIPAGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSL 402
The following BLAST results are available for this feature:
BLAST of TCONS_00050072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DZAN17.802e-4029.37Double zinc ribbon and ankyrin repeat-containing p... [more]
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