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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050079 ID=TCONS_00050079|Name=TCONS_00050079|organism=Clytia hemisphaerica|type=transcript|length=1415bp
aaaAAGAATGGAAAAATCACCAGAGAAGATGAATAAAGACCAACATGAAG
TCAAAGAAGATCTAAAGAGTGAATCTAAACCGTTAGAAACAATCAATCCA
TTTGATTGCCAAGAGAATAACGCAGACAGTCTGGTCAAAATCAGAACAAA
AGATCAAAAGGTCATCTTGATTGATCATATGATGTTGCTCTTCATATCTG
ACGCTTTTGAGAAcatcattgaaaatgaagaaggacAGAAATTTATTGAT
GCATCTGAATTCAGTCCTGAGAATATTGTTCAAgccatttcatttcattt
accAAGATTCAATGGGAAATTGAATGacaaaTGCGACTTCGCAGGATTAT
TATCAATCTGCTCGAAATGGAGTTTAAGCAACTACAGGAATCACATTGAA
GAATATTTGCTGACTCAGCACAAAGCTGGTATTGAGAAATTCAACGGTTG
TTTACAACCTCAACATCTCGATATATTACATCTAGCAGATCGATTTCaac
ttgagaaaattttgaCAAAGCTTATGTCCAATCTGTCAAGCATAGGTTTC
GAGTACTCAACAAATATCAAAGTAAGTTTGGAAAAGCTGAACAGAGAAAT
CAAGTATGAAATTCTGAAGACTTTGATTGTTGGGAAAGCTACAAGAGAGT
CAATGGCGGCATCAGTTTCAATGGAATTAgattgtattttcaattttttg
gatcTGCTCATTTTTGAAGATCGCGTCTTAGATATGTATgctaaaaacaa
attcaaagatTTCGCAAGTCACAAGGAATATCTTATCTACAGTAAACTCA
GAAAAGAGGATTTCACCGCAAAACAAAGATCGAGTGATGTAAAACTGGTG
GTCAACGGAGATGAGCTGTTTGTCAATCCTTACATTCTATCTAATAATTC
ACCGGTGTTGAAGGATATGCTGGTCAAAGCTGGTAAAGAGAACGATGGAG
ATTGTTTGAATCTTCTATGGAAATCAACagatgaaattgttttgttgttg
acCTTTTTGACCAAATCTATGGAATTGAATGGGGACTGTGACCTTTACAC
GCTTGCATCACTTTGTAAAGAATACAAGATCGAATGGCTGAtgttgaaaa
tcgaaaaatttgtcCAAGACCTCGATATGTCAAAACTTAGCGCCAAAGAA
ACCCTCGTATTCCTCAAACTTTCTTCCATCTACGGTTTCACAAAAGCTGA
ACAAAGATTGGTTAATCAGGTTAACGAAGACTTTCTGAAACTTCAAATGC
ATCAAGAATTTACTTGGCTGAATACAAGAGCAAAGGTTTTACTTGCACGA
AAAAGACTGTGgagtttattgaaaaattttcaagaaaagtcTTATTTGTT
GAATGAACTAAACGTTGGGTTACTATCAGTGTTAAAAGATTATAAACAAT
ATGAGTTTGAATTTT Run BLAST on NCBI transcript from alignment at scaffold_167:919355..921594- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050079 ID=TCONS_00050079|Name=TCONS_00050079|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at scaffold_167:919355..921594- (Clytia hemisphaerica)
AAAAAGAATGGAAAAATCACCAGAGAAGATGAATAAAGACCAACATGAAG
TCAAAGAAGATCTAAAGAGTGAATCTAAACCGTTAGAAACAATCAATCCA
TTTGATTGCCAAGAGAATAACGCAGACAGTCTGGTCAAAATCAGAACAAA
AGATCAAAAGGTCATCTTGATTGATCATATGATGTTGCTCTTCATATCTG
ACGCTTTTGAGAACATCATTGAAAATGAAGAAGGACAGAAATTTATTGAT
GCATCTGAATTCAGTCCTGAGAATATTGTTCAAGCCATTTCATTTCATTT
ACCAAGATTCAATGGGAAATTGAATGGTAAGTAGTTTCTCTTGATAAGGT
TCTAATTTTGGCTAGCCCATGGTCAAAAGGAGCCACAGACGCTCAACTAT
TTTCTGTGAAAAGATGAAAGTCAACGTCAGATGATAATCTTGGCTCTAGT
TTGTCCTCGCTATGAAAACATACCATTTCATATTCTCTAGACATGTCAAG
TTTTATCCGTTAAAAATAATTATGATTTATTTTTCAGACAAATGCGACTT
CGCAGGATTATTATCAATCTGCTCGAAATGGAGTTTAAGCAACTACAGGA
ATCACATTGAAGAATATTTGCTGACTCAGCACAAAGCTGGTATTGAGAAA
TTCAACGGTTGTTTACAACCTCAACATCTCGATATATTACATCTAGCAGA
TCGATTTCAACTTGAGAAAATTTTGACAAAGCTTATGTCCAATCTGTCAA
GCATAGGTTTCGAGTACTCAACAAATATCAAAGTAAGTTTGGAAAAGCTG
AACAGAGAAATCAAGTATGAAATTCTGAAGACTTTGATTGTTGGGAAAGC
TACAAGAGAGTCAATGGCGGCATCAGTTTCAATGGAATTAGATTGTATTT
TCAATTTTTTGGATCTGCTCATTTTTGAAGATCGCGTCTTAGATATGTAT
GCTAAAAACAAATTCAAAGATTTCGCAAGTCACAAGGAATATCTTATCTA
CAGTAAACTCAGAAAAGAGGATTTCACCGCAAAACAAAGATCGAGTGATG
TAAAACTGGTGGTCAACGGAGATGAGCTGTTTGTCAATCCTTACATTCTA
TCTAATAATTCACCGGTGTTGAAGGATATGCTGGTCAAAGCTGGTAAAGA
GAACGATGGAGATTGTTTGAATCTTCTATGGAAATCAACAGATGAAATTG
TTTTGTTGTTGACCTTTTTGACCAAATCTATGGAATTGAATGGTAAGTGC
GTTTTATGATTCAGATGCAATGTAACAGGTGTCAAATGAAAAAATTCATC
ATTTGAATTTTCTCTGAAAAACGGAAAACAGAGAACAAATTCACCTTCTC
TTTCCTTTGCTCTGTGTAAGAGATTACAGTGTTCTCCTCTACCTCAATTT
TTTCGAGGAAACGTGTTTCGCGTGTATTAAATTTCGCGATTCCCTAAATT
GGGCATTTTCAAAAAGTGGGAATAAAGCAAGAAAATGACTGATTTTGCTT
GAAACACAACGTATTGGGTGTAAACATACCAAAAATAGTAACAAAACTAG
TGACAAAACTAGTGACAAAAATAGTAACTATGTGTAACAAATAAATATTT
TCGATTTCGGCCTATTTTGAAAATTTTTCGCGTGTATATAATTTCGCGAT
TTTGTATTTTTGAAAAATTTAAACGGTATTAAATTTCGCGAAATTTGACC
TAAACAATCGCGAAATTAAGTACCCGCGAAATTTTGTAACCCGCAAAATA
AAGTATTCAATCTTTTATAATTTTCATCATTTAAAATGGCAAAAACTCTT
CAGCCTATTGCAGCTGTTTTTTTTACAACACTTCTTCAAAATTCTATCAT
TCAAAGGGGACTGTGACCTTTACACGCTTGCATCACTTTGTAAAGAATAC
AAGATCGAATGGCTGATGTTGAAAATCGAAAAATTTGTCCAAGACCTCGA
TATGTCAAAACTTAGCGCCAAAGAAACCCTCGTATTCCTCAAACTTTCTT
CCATCTACGGTTTCACAAAAGCTGAACAAAGATTGGTTAATCAGGTTAAC
GAAGACTTTCTGAAACTTCAAATGCATCAAGAATTTACTTGGCTGAATAC
AAGAGCAAAGGTTTTACTTGCACGAAAAAGACTGTGGAGTTTATTGAAAA
ATTTTCAAGAAAAGTCTTATTTGTTGAATGAACTAAACGTTGGGTTACTA
TCAGTGTTAAAAGATTATAAACAATATGAGTTTGAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050079-exon-scaffold_167-1575043694:921269..921594 | TCONS_00050079-exon-scaffold_167-1575043694:921269..921594 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1575043694:920353..921057 | TCONS_00050079-exon-scaffold_167-1575043694:920353..921057 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1575043694:919355..919738 | TCONS_00050079-exon-scaffold_167-1575043694:919355..919738 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1510915933:921269..921594 | TCONS_00050079-exon-scaffold_167-1510915933:921269..921594 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1510915933:920353..921057 | TCONS_00050079-exon-scaffold_167-1510915933:920353..921057 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1510915933:919355..919738 | TCONS_00050079-exon-scaffold_167-1510915933:919355..919738 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1491911889:921269..921594 | TCONS_00050079-exon-scaffold_167-1491911889:921269..921594 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1491911889:920353..921057 | TCONS_00050079-exon-scaffold_167-1491911889:920353..921057 | Clytia hemisphaerica | exon |
| TCONS_00050079-exon-scaffold_167-1491911889:919355..919738 | TCONS_00050079-exon-scaffold_167-1491911889:919355..919738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:919355..921594 - |
Blast
The following BLAST results are available for this feature:
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