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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050080 ID=TCONS_00050080|Name=TCONS_00050080|organism=Clytia hemisphaerica|type=transcript|length=1923bp
ATTATCAATATGGTCAAAAGTTTGGAGACATGAGTCCGAATCATGCATGG
AATGTCGTAAAACTGAACAATGATTGGTGGCTGCTAGATTCAACATGGGG
CGCTGGCTACGTAGACAAAGAGAAGAATTTCGTACGACAGTATAGTGAAC
ATTATTTTCTAACGGATCCTAAACAATTCATTTTCGATCATTGTCCGACA
GACATGCATTGGCAACTATTGGAAGAAATGATCGCCGTTGAACGGTTCGA
AAATTACGCTCGAGTTACGAAACATTTCTTTCGCctcaaaatgaaattat
tttcacatcaaaacgGAATTGTTGTATGCGAAACTGGCCGTTTACATCTT
AAGTTCCGTATTGATAAAGATATTCCGATAAAATGTACCGGAAAATTATC
GGAAGTTGACGGAGATGTGGATACGGATCAATACATTCATGTTTATTCGA
CAGAAAAGACGCTTCACGTTTTAGTCGATGTTCCTCGCGTTGgacaattt
gatttgaaaatattcgCACGAGAACTGAACTCAGAGCAGAGCAATTTGAA
TTTAGTATGCAGGTATGCGATCACGTGTACTAATAAATTGGGACCGAGCT
CAAGTTTTCCTAGACAATTCAAAAGATGGAGTCCAGGCTTTTATTTACAT
TCTCCAACTGATGGTGTTTTGTATAACGGTGAAACGTACAAGTTCCGAAT
TAGTTTACCGAATGTTACGGAAATGGCAGTTTGTTTGGGTGGAAAGAATT
CTACATGGGAACGCATTCCAAACAGTCGAGGTGCATTATGGGAAGGTGAA
ATCACGCTTCCTGATTGGGTGGAACGAGTGAACGTGGTGGCacgttttga
agaaaaaactcCTTTCTCCAGTCTTTTGGAATACAAAGTCGCTGAAAAGG
ATTGGGCaattgaaaattgtgaaaatgaaCATTCATAATATTCGTGATAT
TCATttcgtaatgttttctacggaatcACACCggcaatttttaaacaatt
tttctcCAGATTGAATTTACCACTACTGGAAAAAACCGAGGTGTTACCGt
agaaaatattacgtcatgaatacatccccttctcacagacccggtagcat
tttttaagccagtggggataaaaataacggactaaaactcgatggggatt
gatattcccatattttttatggctgaggatttcaattcttttgtttttaa
gtcagaaaattcagtgggaatgggaaaaatagtaaatattttgcagtgag
gattgtttTTTTAATCCTTTTCGGtgaggacaaaaattggaggataattt
tccaccgggggcgatattttggccaatttttccagtgggaaggggtccca
gtgggtcaaTGAGGAAGGGGTGTATGAATATAATGAATCATACAAATTAC
gaattttgagatgttttttttatcattcgTTAATAAGGAAGTCTCTTATA
TTTGTTAACAAGGAAAGCTACCCCAAGGAACCGATCTCCACGCAAATTTC
TATATTTGAATATACTTTAATCTGCAAAATATTCCGGCAAAATTTGCCCC
GAGGATGTCTCAGAAGAAAACCGAAGATCAGCTTTTTCTATAATTTATGA
TTTTCAGCAGTCTATAAATAATTTCATTTACAGCATTTATACATAAAAAT
AATgtgaaaatctttctaaaactAAGTTGATACATTATTGATTTTTATTG
GTCTGGTTATGCATCAGTATACTGAagtgattttatatttttaaatagtt
taaagtttgttttaaatattaattggttttaaatttttgattgttgtgct
attttttttttaaattcaaacaaTGTAAATAGTTAATTTAGATGCtattt
ttatacatcaaaagatCAAAGCATAATTGGGAAAGCGAAAACTCAAACTG
GTATGATTAATccaaaaaatatc Run BLAST on NCBI transcript from alignment at scaffold_167:947391..949725- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050080 ID=TCONS_00050080|Name=TCONS_00050080|organism=Clytia hemisphaerica|type=transcript|length=2335bp|location=Sequence derived from alignment at scaffold_167:947391..949725- (Clytia hemisphaerica)
ATTATCAATATGGTCAAAAGTTTGGAGACATGAGTCCGAATCATGCATGG
AATGTCGTAAAACTGAACAATGATTGGTGGCTGCTAGATTCAACATGGGG
CGCTGGCTACGTAGACAAAGAGAAGAATTTCGTACGACAGTATAGTGAAC
ATTATTTTCTAACGGATCCTAAACAATTCATTTTCGATCATTGTCCGACA
GACATGCATTGGCAACTATTGGAAGAAATGATCGCCGTTGAACGGTTCGA
AAATTACGCTCGAGTTACGAAACATTTCTTTCGCCTCAAAATGAAATTAT
TTTCACATCAAAACGGAATTGTTGTATGCGAAACTGGCCGTTTACATCTT
AAGTTCCGTATTGATAAAGATATTCCGATAAAATGTACCGGAAAATTATC
GGAAGTTGACGGAGATGTGGATACGGATCAATACATTCATGTTTATTCGA
CAGAAAAGACGCTTCACGTTTTAGTCGATGTTCCTCGCGTTGGACAATTT
GATTTGAAAATATTCGCACGAGAACTGAACTCAGAGCAGAGCAATTTGAA
TTTAGTATGCAGGTATGCGATCACGTGTACTAATAAATTGGGACCGAGCT
CAAGTTTTCCTAGACAATTCAAAAGATGGAGTCCAGGCTTTTATTTACAT
TCTCCAACTGATGGTGTTTTGTATAACGGTGAAACGTACAAGTTCCGAAT
TAGTTTACCGAATGTTACGGAAATGGCAGTTTGTTTGGGTAAAAAGTATT
TCTGCTCTATCGGTCTTTTCATCACTTATATCACGGATAACATCTGTCTC
ATCTTCAAACAGTGTCCAATCTTTCATTAATGAAAAGAATGTACCTCCTA
GAAACTTTGATGGTTGTCATAGCATTGACAAACGCAGCCCTTTATTTAGA
AAAGAAAATTTCAATCGACCTTTCGGAAATTGAAAAAACCAGCGATGTGA
AATAAATTTATGGCAATCTTGCTTCTAGCGCCAGATTAGGAGTGGTTCTG
TCCTGAATTTTGAGTTGGTCAAAATTCATGGCAAAGAACTAAAATCCTCG
ACATTTTAATTTCGGGAAAACCGATCAAAGAATACCTTAGAGTGTGTTTT
ATAATATACATGCCATTATTTTATTTCGTTTGCATTTATTTTCTTGACAG
GTGGAAAGAATTCTACATGGGAACGCATTCCAAACAGTCGAGGTGCATTA
TGGGAAGGTGAAATCACGCTTCCTGATTGGGTGGAACGAGTGAACGTGGT
GGCACGTTTTGAAGAAAAAACTCCTTTCTCCAGTCTTTTGGAATACAAAG
TCGCTGAAAAGGATTGGGCAATTGAAAATTGTGAAAATGAACATTCATAA
TATTCGTGATATTCATTTCGTAATGTTTTCTACGGAATCACACCGGCAAT
TTTTAAACAATTTTTCTCCAGATTGAATTTACCACTACTGGAAAAAACCG
AGGTGTTACCGTAGAAAATATTACGTCATGAATACATCCCCTTCTCACAG
ACCCGGTAGCATTTTTTAAGCCAGTGGGGATAAAAATAACGGACTAAAAC
TCGATGGGGATTGATATTCCCATATTTTTTATGGCTGAGGATTTCAATTC
TTTTGTTTTTAAGTCAGAAAATTCAGTGGGAATGGGAAAAATAGTAAATA
TTTTGCAGTGAGGATTGTTTTTTTAATCCTTTTCGGTGAGGACAAAAATT
GGAGGATAATTTTCCACCGGGGGCGATATTTTGGCCAATTTTTCCAGTGG
GAAGGGGTCCCAGTGGGTCAATGAGGAAGGGGTGTATGAATATAATGAAT
CATACAAATTACGAATTTTGAGATGTTTTTTTTATCATTCGTTAATAAGG
AAGTCTCTTATATTTGTTAACAAGGAAAGCTACCCCAAGGAACCGATCTC
CACGCAAATTTCTATATTTGAATATACTTTAATCTGCAAAATATTCCGGC
AAAATTTGCCCCGAGGATGTCTCAGAAGAAAACCGAAGATCAGCTTTTTC
TATAATTTATGATTTTCAGCAGTCTATAAATAATTTCATTTACAGCATTT
ATACATAAAAATAATGTGAAAATCTTTCTAAAACTAAGTTGATACATTAT
TGATTTTTATTGGTCTGGTTATGCATCAGTATACTGAAGTGATTTTATAT
TTTTAAATAGTTTAAAGTTTGTTTTAAATATTAATTGGTTTTAAATTTTT
GATTGTTGTGCTATTTTTTTTTTAAATTCAAACAATGTAAATAGTTAATT
TAGATGCTATTTTTATACATCAAAAGATCAAAGCATAATTGGGAAAGCGA
AAACTCAAACTGGTATGATTAATCCAAAAAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050080-exon-scaffold_167-1575043694:948988..949725 | TCONS_00050080-exon-scaffold_167-1575043694:948988..949725 | Clytia hemisphaerica | exon |
| TCONS_00050080-exon-scaffold_167-1575043694:947391..948575 | TCONS_00050080-exon-scaffold_167-1575043694:947391..948575 | Clytia hemisphaerica | exon |
| TCONS_00050080-exon-scaffold_167-1510915933:948988..949725 | TCONS_00050080-exon-scaffold_167-1510915933:948988..949725 | Clytia hemisphaerica | exon |
| TCONS_00050080-exon-scaffold_167-1510915933:947391..948575 | TCONS_00050080-exon-scaffold_167-1510915933:947391..948575 | Clytia hemisphaerica | exon |
| TCONS_00050080-exon-scaffold_167-1491911889:948988..949725 | TCONS_00050080-exon-scaffold_167-1491911889:948988..949725 | Clytia hemisphaerica | exon |
| TCONS_00050080-exon-scaffold_167-1491911889:947391..948575 | TCONS_00050080-exon-scaffold_167-1491911889:947391..948575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:947391..949725 - |
Blast
The following BLAST results are available for this feature:
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