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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050085 ID=TCONS_00050085|Name=TCONS_00050085|organism=Clytia hemisphaerica|type=transcript|length=869bp
GGTAGTGGTGGAAGTTGGAAGTGAAGTAAAATAATGCAGAAATCAAAGAT
ATCAAATTCGAAAAACTTGACATAAAATGGGTTGTGGCTCCTCAAAAGTT
GCTGTTAGTACAGTACTCGTAAATGGCACACAGGACGGCGCCATACTTAA
AGATGCTAACGGAAATATCACACAATCAAAACCTATTGGTTCTAATGAAA
AAGAGAGACTTGGCTCTCAGCTAGGATCAAGTAATCGATTAGGTCCTGTT
GAAAGTCTTGGTATTTTTCGAAAACGCAAGAAGAATTTGTATCAATCTCT
GGATGTCTTTGAACAAATCGATCAACGTTCTGTCACGGTGCCATCTACTG
TTTCAAGGACTGCTCAATCTTTAGTTCAATATTTGACTGAACCTTACGAA
GCACCCCTATTCAAACTACGTGCAATCTGGATATGGGTCACTCATAATAT
CTCCTATGAcgtcaattcttttttcaatccaagtgaaaagaaaagctcCC
AGTTAGATGCATCGGACGTGCTATCAAGCGGAAAAGCTATTTGCTCAGGT
TATGCTAATCTGATAAATGTTTTAGCAGAatcagcTGGAATTAAAACTGA
GCGCGTGGATGGTTGGTCTAAAGGCTACAATTATCAATATGGTCAAAAGT
TTGGAGACATGAGTCCGAATCATGCATGGAATGTCGTAAAACTGAACAAT
GATTGGTGGCTGCTAGATTCAACATGGGGCGCTGGCTACGTAGACAAAGA
GAAGAATTTCGTACGACAGTATAGTGAACATTATTTTCTAACGGATCCTA
AACAATTCATTTTCGATCATTGTCCGACAGACATGCATTGGCAGCTATTG
GAAGAAATGATCGCCGTTG Run BLAST on NCBI transcript from alignment at scaffold_167:951139..957819- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050085 ID=TCONS_00050085|Name=TCONS_00050085|organism=Clytia hemisphaerica|type=transcript|length=6681bp|location=Sequence derived from alignment at scaffold_167:951139..957819- (Clytia hemisphaerica)
GGTAGTGGTGGAAGTTGGAAGTGGTGAGTAGTGTATAATTATTTTCCTGC
TTTATAATCTCATAATCTCAGGAAGCTTTTAGCACCAGTGAAAAAATGAC
TAAACTTATACTTTTGCTGCTCTCTGCTGCATGAACAGGGGAATTTCAAT
GTATATAACTACTTTTCACCAAATTAAACTAATCAGCTAATCACACATTT
GAAAGGTAGGTTCTTGATTACATCACATCCCAAACCAAATGAAGCATTGT
ACCGTGAAGTCCATAACTTGCATCAGTAGTGGAGAGAAAGTTTTGTTGCA
TCGCCCACAAATGAATGACCTGGATGGTCATTAAAATACAAAGTTAAATC
AAAACAAAATGGTTGAGTCGAACTGCGAGCGGAGCAGCTTTGATTGGTCA
GTTATTTGATGGCTATCTATGCAAGTTTCCCTCCACTGATGCGAGTTACC
CGACACGGTACCATTTTAGAGAATCTCATATTTGCCGTGCAAGTAATTTT
GGCAAGTTACTCGCCGACAGAATCCCGGGTAAATGAAACAGCATGGTTGG
ATAATAAAAAATCATGCGAGATCATGCATTTCAAGATGGCAGGAATTCAG
ATGTTTCTCGATGGGCTGCGCTGGGACGTGCAACCTCAAATTTAATAATG
ATAATATTAAACATATATGATGCATGACATCACTTATGATTAGGGGATAT
GTATTTTCCACCTGCAAATTTTGTAAATCAGGTGTATGCAATGACTTCAG
GGTAGATAAGAGCTGCAAGCGGAGCTGCATAGTTCATCGTAGTTCATTTG
TTTTGAAATTTTGCTGCTTTTACTGGTCAGTCATTTGATGGCTATGCAAT
TTTCCCTTCATTGATGAAAGTTACCCAACTTCATGGTATGGTATTGACCA
TGAAATTCCGGTGTCAGTACAGGTCATGTCACGGCCCGGTTGTTCAAGTA
AAAGTGGATTAGTGGCTGATAAGCTTAAATTTTTCCAAAAATCTCTATTA
GCGCTGATTAAGACAGGCAACAGAATCCACAGTTGTTAGGAAAAAAATTA
GGCTAAAAGTTGTGATTAAATTCCGATTAAATAGACCAAATTTTAATCAT
TCTCTGACCCACAATAAAGCTGTTATATATATTATGTTATAAATCATTAA
AAGCAGAATCTTGAGTAGATTTTTATTCTTAAGAAGTGATGGCTTAAAAA
GAACTTACAAAATCAAATTATGGTTTGTTTGACCTAACCTAACATAAGGT
TAGCCCTGTATTTGCCTTAATTTAAAGATTAAGAAAATGCTGGGAAAAAC
ATTTCTAATTACTTATTTCTACTTTCTACTATTATGTCCTCTAGTTGCTT
AAATGAGTTTGCAACCAAAGTGGAAGGCAAGCCAAAGGCTCTAAGCTATC
TACCCAAAGGAAAGGGAGGGTTTTGGATGAACAACCAGCTGTAAGATCAT
CACATTTTCCATCTCATAGTTTTGTTATGGTATTAAAATCAAACTTATAT
TTTTGCCACCAATATTAAGTAAATCAATTAGTTGTAGGCCATACTCTGCT
TAGTTTTATCAAAATTTCAATATTTGAACCTGTACTTTGATTGGGATAAA
TCTGCGCGAAAAATTCCAGAATGTGGAAATCACGAAATTTAGTACTGACA
GTACTTGTGAAACACGTTTCCATGAAAAAATTAGTACCCACGAAAATATA
TACAATATCAAAAATAGATATTGCAGTTTGTTTATTCTGAAATTTTAAGA
TAGAAACATAATTTTAGAAACACACAATGTCTTAGTTATTCATTTGAAGA
AAAGATTTATAATAAGGACTTAAAAAAAATGTTTCCTTGGATTTTCATTT
CTATTGTAGTTTCCATATTAAAACAACTTATACAAATAAGTAATTCTGTT
TTGTTTTTGCTTTTTAAAAGACTTTTTACTAGATCAGATATATGGTACTT
TCTTTGATATAACTATATTAAGGGGAAAGATATTCCAAATCATTTATCAA
ACAGTGCAATTTCAAAAGCAAACTTTTTGCACCTTTTTTCTGCTCTATCA
TATTTCATCTAGTTGCAAATTTTTTGTTGCTATGGTAATATCTTGTTTAT
TACTTCTCAAATTGGATAGGACAGCGGATACAAAACCATCACTCTGGCTT
CACTGTGTACATTTGGGGTAAAATAAAGTGATTTGGCTAGTTTGAATTCT
CAAATGGTTAGGGCACTTGGTGTCTCGATATACTTGTTTTGTTCAAGACT
TTTTAATGTACCTTAATATTGAATACACCTGGACCATTTCTTCAAGAAAG
GAATCTATTTAGTTTGTATCTGAGAAAAAAAACTCCTAAAAGACCTATCC
ATCTCATTTAAAATTGCATTGAAAATACTGTATCTGATGATCATGTAATT
GTTTTTTTGGTTTAATTTCAGCTTGCTTGGCCTTGTCTAATGAGGAATTT
TATATTCAGAAAATATTTTATTTTTACGGATCTTTTTCTTCATAGAATCA
CTTAATTTGGAGTGTCCTAAACAGATGCTTTGGATTTAAAAGTAGCTTTA
CTTTTGGGACTTGATAAGGGAATGTAGGGGAATCAAGTCTCTATACGATG
CTTTGATTTAACACTTTTATTTGAGTTTGGATTTGGAGATGTGTACAGGA
ATATCTTTTAATAAATTAATCTATCTTTGAAATTATATGAGTGATTTATA
TCTAAAAAGCAGTATGAAAATTTTATTTTTCAATTAATAGAAAGCCCTCT
GCCTACCCTATGCTGGTATGGTCAAAAGGAATTTCATTTTAGGATTTGTG
CATAATTGATATTCTAGTTCCAATAGAATCGTTCTTATTGCTTTACTGGT
CAAAATCTGGTCTTTATTATAATCTTGTTCTTTTCAAGTATTAAAGCGAA
TCTTTTGTTTTAAGAGGTTTTTCTATCGAAATAAAGTTTGAGAGAGAGCT
TAATGTAAGAGGAACCTAGCCTATAGGAGTATTTCTGAACTTCTAAACAA
ACACTATATTAGAACCTTGGCTGAATAGGATCATCATCTTCAATTCAAGT
AGACTATTTCATTTTAAGGTATTTAAACTCAAGAAAGTTTGCTATTACTT
CTATCATGAAGCATAAGTCATATAGTCTATGAACAGCTTTTGGATGTCGT
TCTACACAAGGGAAGTTACAAAACAAACTCAAAGTTTCTTTGACAAAACA
CTCCTTCATTAATTTGAGTACCTTAATGGATCAGTTCAAGGACTACTAGA
ATCGCTTAAGCACAGCATGGGAAAGTTTGTCGATATGTAGCGAGGGTACT
TGAAAGTCTAGGTTTTATTTGCACTTTAGATATAAAATACTAATGACAGA
ACATTCTACTTTTCATATTTTTGCTTCTTTTATAATTTTAGAAGTAAAAT
AATGCAGAAATCAAAGATATCAAATTCGAAAAACTTGACATAAAATGGGT
TGTGGCTCCTCAAAAGTTGCTGTTAGTACAGTACTCGTAAATGGCACACA
GGACGGCGCCATACTTAAAGATGCTAACGGAAATATCACACAATCAAAAC
CTATTGGTTCTAATGAAAAAGAGAGACTTGGCTCTCAGCTAGGATCAAGT
AATCGATTAGGTCCTGTTGAAAGTCTTGGTATTTTTCGAAAACGCAAGAA
GAATTTGTATCAATCTCTGGATGTCTTTGAACAAATCGATCAACGTTCTG
TCACGGTTGGTTTCTTTCAGCTTTCCATCCTAGAACGATTGAATTTTCAT
AAAAACGCCCTGTTCAGTTTTGCTACCTTAAGGGAACTTATTTTGGCGGG
AACTAATTTTGGCGAATTTGGCGAATTTAGACGAAATTCGCCAAATTTAG
TTCCCGCCAAAATTAAATATTTTGCTCACTCGCCAAAATAAGTTCCCGCC
AAAATTAGATTTTTTGTTTCCTTGCCTAAATAACCCCTGAAATTCATCAA
AATTGCTCAAAATAAGGTAAAATAGAACAGATTTACGCTGTCATTCGCCA
AAATTGGTTCCCGCCAAAATTTAAAAAATTCACTATTCGCCAAAATTAGT
TCTCGCCAAAATTAAAATTTTTAAAGATTTTCACTGCTCGCCAAAATTAG
TTCCGGCCAAATAAGTTCCCTTAAGGTATATATTTTTTAGGAAATGTTTT
ATTCGTGTAAAAATCTGCTTGTAGAATCACAACAAATGTGCTTATAAGCA
CGCAAGCACGCCTTAGATACCTTTAACCACCACGGACTTATTCATTTTTT
TCTATGTTCAACTGTTATATATCTTTTGTCAAACGATGCAATTAACGTGC
AAAAGAGATTAGCGCAAAGGTTGATGGGATTGGAACTCGTACAAACACAT
CGAGAGTAATGATTATGTCAAAAGTAAAATCTATTTTTAGATTCAGCACG
GTGCGCTATTTAAAGTCGGCATTCGGCAGTGTTGACCCAAAAAGCGACTT
AAGTATGAGTAGAGTCATCATCAATTCTCTCGAAAACCGAAAATAAATTG
CCCAAAAAGTCAATCATCTCCTAATGCATATCATAGGAGTAAGTGACAAG
CAACCATCCACAGCCTTAATAAATAAAATTCCGACCTAAAACTCAGACAC
AGATCGAAAAATTTTTGCGGGCCTTTTTGTACGTTTCGACGCACTTTTAT
TGATTTACACATCATTTCTGTGTCTAGCTATGCAATCACTAGCCTATACT
AGACGTCACCCGCGTTTGTTTTACGCAATTAAATCGTCAAAGTGGAACTC
ACTAAGAAACGAGATGAAAAATCCCGGTTTTTAGTGAGGTGCTCGCTATG
CAATCACTGGTTTATTAGCCCATACCGCTAAAATATTTTTAATTTATTTG
GTTTGTGCTTTATTGTAGGTGCCATCTACTGTTTCAAGGACTGCTCAATC
TTTAGTTCAATATTTGACTGAACCTTACGAAGCACCCCTATTCAAACTAC
GTGCAATCTGGATATGGGTCACTCATAATATCTCCTATGACGTCAATTCT
TTTTTCAATCCAAGTGAAAAGAAAAGCTCCCAGTTAGATGCATCGGACGT
GCTATCAAGCGGAAAAGCTATTTGCTCAGGTTATGCTAATCTGATAAATG
TTTTAGCAGAGTAAGTTGCTTTTATTTTGTTTTGTTAATTGTACCTTTTG
GTTGTGTTTCATAATGAGTATCAACAAAAAGCTTCCTTTTGGTTTCTGAA
ATTCTGCCCCTATGCAACAACTTTTTTTAATATGTGCTGTTTTATAGTCA
ATTGTTGCTTTTTGAGTGTATTTTACTATTATAGGGAATAAGGGGCTGTA
AATTTGTAGTTTGGTTGAACTATTATGAAAAAACATTCGCAAATGTTGTG
TTAATATCCCTTAAGTAGGAGATCCGCCTCTAGACGTCGGCTAAATTTTA
TTGTTTTGACACCCCTGTCTCAAAGAACTTACCAGTGGATACCCTTAAAA
CCACATACCCCTTAAAACCCACAATGTTGCATTTTTGGCTTTCATAACTA
CCAGATTTAATTTTATGTNNNNNNNNNNNNNATTTATTTGGTTTGTGCTT
TATTGTAGGTGCCATCTACTGTTTCAAGGACTGCTCAATCTTTAGTTCAA
TATTTGACTGAACCTTACGAAGCACCCCTATTCAAACTACGTGCAATCTG
GATATGGGTCACTCATAATATCTCCTATGACGTCAATTCTTTTTTCAATC
CAAGTGAAAAGAAAAGCTCCCAGCTAGATGCATCGGACGTGCTATCAAGC
GGAAAAGCTATTTGCTCAGGTTATGCTAATCTGATAAATGTTTTAGCAGA
GTAAGTTGCTTTTATTTTGTTTTGTTAATTGTACCTTTTGGTTGTGTTTC
ATAATGAGTATCAACAAAAAGCTTCCTTTTGGTTTCTGAAATTCTGCCCC
TCTGCAACAATAGTACCGTGGTTACGCCCCAATAATTTTTTTAAGGATAA
GTTTTTTCCTCATTTTGTCATTTAAAGACTTTTTAATATGTGCTGTTTTT
TAGTCAATTGTTGCTTTTTGAGTGTATTTTACTATTATAGGGAATAAGGG
GCTGTAAATTTGTAGTTTGGTTGAACTATTATGAAAAAACATTTAAGTAG
GAGATCCGCCTCTAGACGTCGGCTAAATTTTATTGTTTTGACACCCCTGT
CTCAAAGAACTTACTAATTTTTCAGTTGTTTTAACTTTTAACGTGAATAA
TAATGCTTTTTCATTAAATTTCCTTTTTTAATGAATTGGGGTTTTCAAAA
AAATGTCATTCCAGTGAGAATAAGAACCCAGTGTACTTCCCAAAGATGTT
GAAAATATAATTATCTCACCGAAAACAAGTGTTTGGTCGAATTTTCCTCT
GGTGTAATAAAGGTAAAAAATTGGTTTCTATTATTTTACAGATCAGCTGG
AATTAAAACTGAGCGCGTGGATGGTTGGTCTAAAGGCTACAATTATCAAT
ATGGTCAAAAGTTTGGAGACATGAGTCCGAATCATGCATGGAATGTCGTA
AAACTGAACAATGATTGGTGGCTGCTAGATTCAACATGGGGCGCTGGCTA
CGTAGACAAAGAGAAGAATTTCGTACGACAGTATAGTGAACATTATTTTC
TAACGGATCCTAAACAATTCATTTTCGATCATTGTCCGACAGACATGCAT
TGGCAGCTATTGGAAGAAATGATCGCCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050085-exon-scaffold_167-1575043694:957797..957819 | TCONS_00050085-exon-scaffold_167-1575043694:957797..957819 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1575043694:954115..954428 | TCONS_00050085-exon-scaffold_167-1575043694:954115..954428 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1575043694:952710..952951 | TCONS_00050085-exon-scaffold_167-1575043694:952710..952951 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1575043694:951139..951428 | TCONS_00050085-exon-scaffold_167-1575043694:951139..951428 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1510915933:957797..957819 | TCONS_00050085-exon-scaffold_167-1510915933:957797..957819 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1510915933:954115..954428 | TCONS_00050085-exon-scaffold_167-1510915933:954115..954428 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1510915933:952710..952951 | TCONS_00050085-exon-scaffold_167-1510915933:952710..952951 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1510915933:951139..951428 | TCONS_00050085-exon-scaffold_167-1510915933:951139..951428 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1491911889:957797..957819 | TCONS_00050085-exon-scaffold_167-1491911889:957797..957819 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1491911889:954115..954428 | TCONS_00050085-exon-scaffold_167-1491911889:954115..954428 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1491911889:952710..952951 | TCONS_00050085-exon-scaffold_167-1491911889:952710..952951 | Clytia hemisphaerica | exon |
| TCONS_00050085-exon-scaffold_167-1491911889:951139..951428 | TCONS_00050085-exon-scaffold_167-1491911889:951139..951428 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:951139..957819 - |
Blast
BLAST of TCONS_00050085 vs. Swiss-Prot (Human)
Match: KY (Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 3.784e-36 Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 2
Query: 269 RKRKKNLYQSLDVFEQIDQRSVTVPSTVSRTAQSLVQYLTEPYEAPLFKLRAIWIWVTHNISYDVNSFFNPSEKKSSQLDASDVLSSGKAICSGYANLINVLAESAGIKTERVDGWSKGYNYQYGQKF-GDMSPNHAWNVVKLNNDWWLLDSTWGAGYVDK-EKNFVRQYSEHYFLTDPKQFIFDHCPTDMHWQLLE 853
R K++ L FE++D + V T LV L + L ++RAIWIW+ H+I YD+ + EK +D+L + K C GYA L + AG++ V G+SKG+ YQ GQ F G+ +HAWN V L W L+DSTWG+G VD F Y+E YFLT P FI DH P + +WQLL+
Sbjct: 139 RSSLKSMSLDLQQFEKLDIYASQV--TAKSGLDELVSDLLQEAHTDLERVRAIWIWICHHIEYDIAA---AQEKDRQAFKPTDILRTQKTNCDGYAGLFERMCRLAGVQCMTVPGYSKGFGYQTGQSFSGEF--DHAWNAVYLEGRWHLVDSTWGSGLVDTITSKFTFLYNEFYFLTHPALFIEDHFPDNKNWQLLK 328
The following BLAST results are available for this feature:
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